Wall clock time and date at job start Tue Mar 31 2020 18:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.51267 * 120.85628 * 2 1 4 4 C 1.53222 * 108.53923 * 231.37352 * 3 2 1 5 5 C 1.52961 * 109.40598 * 305.36905 * 4 3 2 6 6 C 1.50695 * 109.41448 * 183.70272 * 5 4 3 7 7 O 1.21282 * 120.00383 * 359.85870 * 6 5 4 8 8 N 1.34779 * 120.00024 * 179.85644 * 6 5 4 9 9 C 1.46496 * 120.00092 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.47064 * 180.02562 * 9 8 6 11 11 H 1.09001 * 112.78472 * 284.18945 * 10 9 8 12 12 C 1.53509 * 113.47430 * 153.38126 * 10 9 8 13 13 C 1.53517 * 83.57536 * 219.20766 * 12 10 9 14 14 N 1.47473 * 113.47472 * 55.00003 * 10 9 8 15 15 C 1.46895 * 111.00172 * 253.46865 * 14 10 9 16 16 C 1.50696 * 109.47426 * 198.37844 * 15 14 10 17 17 O 1.21296 * 120.00268 * 353.84405 * 16 15 14 18 18 N 1.34777 * 120.00158 * 173.84568 * 16 15 14 19 19 C 1.37097 * 120.00048 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00484 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99941 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99983 * 359.72601 * 21 19 18 23 23 Si 1.86802 * 120.00003 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47235 * 90.00455 * 23 21 19 25 25 H 1.48510 * 109.47052 * 210.00205 * 23 21 19 26 26 H 1.48498 * 109.47106 * 330.00177 * 23 21 19 27 27 C 1.52961 * 109.75834 * 63.63515 * 5 4 3 28 28 C 1.51273 * 120.84700 * 180.02562 * 2 1 3 29 29 H 1.08003 * 119.99945 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00248 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.62843 * 111.65692 * 3 2 1 32 32 H 1.09001 * 109.62041 * 351.08898 * 3 2 1 33 33 H 1.09002 * 109.48505 * 185.39400 * 4 3 2 34 34 H 1.09000 * 109.48417 * 65.35138 * 4 3 2 35 35 H 1.09000 * 109.41536 * 303.56723 * 5 4 3 36 36 H 0.97004 * 119.99846 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.47442 * 60.00402 * 9 8 6 38 38 H 1.09000 * 109.47369 * 300.00065 * 9 8 6 39 39 H 1.09002 * 114.17215 * 105.55870 * 12 10 9 40 40 H 1.09003 * 114.34777 * 332.86478 * 12 10 9 41 41 H 1.08995 * 113.47564 * 271.26088 * 13 12 10 42 42 H 1.08998 * 113.52651 * 140.80095 * 13 12 10 43 43 H 1.09003 * 109.47044 * 78.37460 * 15 14 10 44 44 H 1.09004 * 109.46884 * 318.37771 * 15 14 10 45 45 H 0.97002 * 119.99888 * 359.97438 * 18 16 15 46 46 H 0.97000 * 119.99709 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.48745 * 56.34235 * 27 5 4 48 48 H 1.08994 * 109.48567 * 176.39065 * 27 5 4 49 49 H 1.08998 * 109.62482 * 248.34227 * 28 2 1 50 50 H 1.08997 * 109.62629 * 8.72149 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0858 1.2986 0.0000 4 6 3.1141 1.2517 -1.1349 5 6 3.9804 0.0000 -0.9844 6 6 5.0496 0.0002 -2.0463 7 8 5.1103 0.9103 -2.8457 8 7 5.9386 -1.0110 -2.1077 9 6 6.9784 -1.0105 -3.1397 10 6 7.8475 -2.2607 -2.9885 11 1 8.5460 -2.1909 -2.1547 12 6 8.5046 -2.7110 -4.3008 13 6 8.1785 -4.1179 -3.7804 14 7 7.0765 -3.5177 -3.0055 15 6 6.9973 -4.1049 -1.6613 16 6 6.6195 -5.5597 -1.7701 17 8 6.3256 -6.0311 -2.8484 18 7 6.6082 -6.3372 -0.6692 19 6 6.2650 -7.6608 -0.7683 20 1 6.0033 -8.0805 -1.7284 21 6 6.2539 -8.4624 0.3666 22 7 6.5775 -7.9531 1.5340 23 14 5.7856 -10.2658 0.2318 24 1 7.0035 -11.0756 -0.0252 25 1 5.1546 -10.7096 1.5008 26 1 4.8262 -10.4457 -0.8874 27 6 3.1130 -1.2506 -1.1366 28 6 2.0856 -1.2987 -0.0006 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 2.5988 1.4186 0.9542 32 1 1.4027 2.1330 -0.1590 33 1 3.7461 2.1387 -1.0898 34 1 2.5964 1.2223 -2.0936 35 1 4.4477 -0.0009 0.0004 36 1 5.8899 -1.7391 -1.4686 37 1 7.5987 -0.1210 -3.0301 38 1 6.5124 -1.0094 -4.1251 39 1 9.5710 -2.4942 -4.3633 40 1 7.9547 -2.4287 -5.1987 41 1 8.9654 -4.5438 -3.1578 42 1 7.8400 -4.8021 -4.5585 43 1 6.2435 -3.5764 -1.0778 44 1 7.9658 -4.0169 -1.1688 45 1 6.8436 -5.9604 0.1931 46 1 6.5694 -8.5127 2.3263 47 1 2.5952 -1.2195 -2.0953 48 1 3.7439 -2.1382 -1.0927 49 1 2.5986 -1.4192 0.9536 50 1 1.4021 -2.1333 -0.1566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670687325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:19 Heat of formation + Delta-G solvation = -59.133587 kcal Electronic energy + Delta-G solvation = -29420.683504 eV Core-core repulsion = 25447.498640 eV Total energy + Delta-G solvation = -3973.184864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.74196 -40.94602 -39.56687 -38.71393 -35.98430 -35.56600 -33.82811 -33.33616 -32.11808 -31.92984 -29.61174 -27.55867 -27.38843 -25.36214 -24.27508 -23.85566 -22.75769 -21.20758 -21.09253 -20.55726 -19.91062 -19.31629 -18.33485 -17.80465 -17.25713 -16.95725 -16.53078 -16.27320 -16.21642 -15.74800 -15.69051 -15.58609 -15.34288 -14.96868 -14.85512 -14.48793 -14.42267 -14.10525 -13.79007 -13.55208 -13.50532 -13.27041 -13.12283 -12.91464 -12.77719 -12.58847 -12.44761 -12.37259 -12.35959 -12.13963 -11.98082 -11.91685 -11.64256 -11.58228 -11.47738 -11.11487 -10.74370 -10.31766 -10.05042 -10.01642 -9.89165 -9.78331 -8.47498 -5.95588 1.36611 1.37813 1.41537 1.53308 1.63640 2.03098 2.19909 2.28158 2.83705 3.18999 3.24388 3.55778 3.60612 3.69416 3.78768 3.80018 4.05277 4.08047 4.15384 4.17353 4.26696 4.30514 4.35592 4.38896 4.44001 4.46706 4.52214 4.61238 4.66540 4.79936 4.82836 4.87608 4.91011 5.00185 5.02692 5.04840 5.12481 5.15835 5.19375 5.21992 5.31457 5.34971 5.41035 5.51599 5.78515 5.91486 6.00441 6.09182 6.52578 6.59675 7.12672 7.23385 7.55387 8.11462 8.69584 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008946 B = 0.003237 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.205299 B = 8646.661878 C =11267.560415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C -0.080 4.080 4 C -0.090 4.090 5 C -0.101 4.101 6 C 0.514 3.486 7 O -0.583 6.583 8 N -0.716 5.716 9 C 0.142 3.858 10 C 0.017 3.983 11 H 0.106 0.894 12 C -0.117 4.117 13 C 0.006 3.994 14 N -0.463 5.463 15 C 0.020 3.980 16 C 0.440 3.560 17 O -0.618 6.618 18 N -0.571 5.571 19 C -0.332 4.332 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.917 5.917 23 Si 0.988 3.012 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.275 1.275 27 C -0.103 4.103 28 C -0.085 4.085 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.120 0.880 36 H 0.405 0.595 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.053 0.947 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.457 18.215 0.475 18.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.132 4.132 3 C -0.117 4.117 4 C -0.128 4.128 5 C -0.122 4.122 6 C 0.302 3.698 7 O -0.463 6.463 8 N -0.367 5.367 9 C 0.018 3.982 10 C -0.093 4.093 11 H 0.124 0.876 12 C -0.155 4.155 13 C -0.123 4.123 14 N -0.186 5.186 15 C -0.112 4.112 16 C 0.227 3.773 17 O -0.504 6.504 18 N -0.208 5.208 19 C -0.462 4.462 20 H 0.094 0.906 21 C -0.209 4.209 22 N -0.558 5.558 23 Si 0.812 3.188 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.200 1.200 27 C -0.141 4.141 28 C -0.122 4.122 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.137 0.863 36 H 0.242 0.758 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.125 0.875 44 H 0.100 0.900 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.285 18.410 -0.840 18.571 hybrid contribution 0.475 -1.539 0.994 1.892 sum -1.810 16.872 0.154 16.969 Atomic orbital electron populations 1.23787 0.95057 1.02417 1.02475 1.22110 0.95426 0.96051 0.99589 1.20828 0.97239 0.94724 0.98920 1.21281 0.96636 0.96178 0.98705 1.21353 0.94302 0.97796 0.98709 1.21083 0.82209 0.81035 0.85501 1.90657 1.74479 1.37605 1.43557 1.46006 1.31532 1.24875 1.34329 1.21314 0.88721 0.96823 0.91337 1.23858 0.94752 0.90283 1.00385 0.87622 1.23151 1.02484 0.93409 0.96445 1.23536 0.92574 0.97914 0.98260 1.68904 1.35738 1.03550 1.10386 1.22461 1.02828 0.92063 0.93805 1.20685 0.83278 0.89139 0.84194 1.90519 1.54658 1.76190 1.29060 1.41913 1.60501 1.09278 1.09153 1.19604 1.44842 0.86250 0.95495 0.90598 1.25948 0.96769 1.04040 0.94129 1.69654 1.48327 1.38561 0.99261 0.85003 0.78543 0.77404 0.77873 1.19729 1.19493 1.19986 1.21479 0.97338 0.96082 0.99243 1.20816 0.97363 0.95123 0.98880 0.87488 0.88414 0.89453 0.90149 0.91128 0.93070 0.86257 0.75835 0.89999 0.92520 0.87487 0.88666 0.91613 0.92096 0.87476 0.90035 0.76942 0.91292 0.92801 0.91225 0.89463 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.32 13.99 67.79 0.95 -2.37 16 2 C -0.13 -2.29 5.35 -16.12 -0.09 -2.38 16 3 C -0.08 -1.22 6.03 30.10 0.18 -1.04 16 4 C -0.09 -1.73 4.53 30.66 0.14 -1.59 16 5 C -0.10 -1.94 2.42 -11.57 -0.03 -1.97 16 6 C 0.51 12.74 7.15 87.65 0.63 13.37 16 7 O -0.58 -18.53 15.94 -3.04 -0.05 -18.58 16 8 N -0.72 -15.90 5.33 -463.06 -2.47 -18.36 16 9 C 0.14 3.06 5.82 86.38 0.50 3.56 16 10 C 0.02 0.34 3.25 42.19 0.14 0.48 16 11 H 0.11 1.74 7.63 -2.39 -0.02 1.72 16 12 C -0.12 -2.28 8.00 30.94 0.25 -2.04 16 13 C 0.01 0.18 6.34 83.58 0.53 0.71 16 14 N -0.46 -13.57 5.74 -906.73 -5.21 -18.78 16 15 C 0.02 0.62 5.09 85.56 0.44 1.06 16 16 C 0.44 19.87 7.46 87.66 0.65 20.53 16 17 O -0.62 -33.31 14.98 -3.08 -0.05 -33.36 16 18 N -0.57 -27.94 5.29 -306.98 -1.62 -29.57 16 19 C -0.33 -18.36 9.68 84.04 0.81 -17.54 16 20 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 21 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 22 N -0.92 -47.80 13.05 21.66 0.28 -47.52 16 23 Si 0.99 42.04 29.55 68.60 2.03 44.06 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 27 C -0.10 -2.11 5.14 30.66 0.16 -1.95 16 28 C -0.08 -1.54 6.04 30.11 0.18 -1.36 16 29 H 0.11 1.50 7.92 -2.91 -0.02 1.48 16 30 H 0.10 1.58 7.92 -2.91 -0.02 1.56 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.08 7.89 -2.39 -0.02 1.06 16 33 H 0.07 1.38 8.00 -2.39 -0.02 1.36 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.41 8.23 5.69 -92.71 -0.53 7.70 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.43 7.88 -2.39 -0.02 1.41 16 39 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 1.89 7.94 -2.39 -0.02 1.87 16 41 H 0.07 1.87 7.84 -2.39 -0.02 1.85 16 42 H 0.06 2.13 7.97 -2.39 -0.02 2.11 16 43 H 0.11 2.83 6.56 -2.39 -0.02 2.81 16 44 H 0.08 2.13 7.56 -2.38 -0.02 2.11 16 45 H 0.40 18.24 7.90 -92.71 -0.73 17.51 16 46 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.07 1.47 7.45 -2.39 -0.02 1.45 16 49 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.07 1.33 7.89 -2.39 -0.02 1.32 16 Total: -1.00 -70.71 399.48 -1.49 -72.20 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: -0.31 Total: 42.42 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 5.91 Total: 7.48 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -9.02 Total: -114.23 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.09 Total: -51.94 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -70.71 -1.49 -72.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670687325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.066 kcal (2) G-P(sol) polarization free energy of solvation -70.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds