Wall clock time and date at job start Tue Mar 31 2020 19:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.52534 * 2 1 4 4 C 1.34778 * 119.99345 * 60.00679 * 3 2 1 5 5 O 1.21276 * 120.00384 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99847 * 180.02562 * 4 3 2 7 7 C 1.54639 * 111.06926 * 67.95243 * 6 4 3 8 8 C 1.51102 * 104.72213 * 142.68385 * 7 6 4 9 9 C 1.30534 * 111.10436 * 343.56216 * 8 7 6 10 10 C 1.51096 * 111.10422 * 0.02562 * 9 8 7 11 11 C 1.53119 * 109.52458 * 120.13413 * 2 1 3 12 12 C 1.53177 * 109.20759 * 177.55865 * 11 2 1 13 13 N 1.46853 * 109.55659 * 300.86228 * 12 11 2 14 14 C 1.46895 * 110.99896 * 185.84172 * 13 12 11 15 15 C 1.50704 * 109.47255 * 65.78540 * 14 13 12 16 16 O 1.21290 * 120.00146 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99818 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00270 * 180.02562 * 17 15 14 19 19 H 1.08007 * 119.99513 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00481 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99626 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00079 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47185 * 90.00135 * 22 20 18 24 24 H 1.48497 * 109.47151 * 210.00298 * 22 20 18 25 25 H 1.48499 * 109.47420 * 330.00109 * 22 20 18 26 26 C 1.46843 * 111.20021 * 61.73967 * 13 12 11 27 27 C 1.53045 * 109.52454 * 298.25926 * 26 13 12 28 28 H 1.09001 * 109.47296 * 59.99237 * 1 2 3 29 29 H 1.09005 * 109.47344 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46793 * 299.99164 * 1 2 3 31 31 H 0.97001 * 120.00321 * 240.00162 * 3 2 1 32 32 H 1.09007 * 110.91307 * 303.96928 * 6 4 3 33 33 H 1.08992 * 110.38567 * 23.87365 * 7 6 4 34 34 H 1.08997 * 110.38675 * 261.49147 * 7 6 4 35 35 H 1.07997 * 124.44898 * 163.82826 * 8 7 6 36 36 H 1.07996 * 124.44503 * 179.97438 * 9 8 7 37 37 H 1.08994 * 110.38987 * 135.24587 * 10 9 8 38 38 H 1.09002 * 110.38585 * 257.51121 * 10 9 8 39 39 H 1.08996 * 109.50331 * 297.55538 * 11 2 1 40 40 H 1.08997 * 109.50465 * 57.67782 * 11 2 1 41 41 H 1.08999 * 109.44705 * 180.83368 * 12 11 2 42 42 H 1.09008 * 109.44546 * 60.88155 * 12 11 2 43 43 H 1.09004 * 109.47092 * 185.78802 * 14 13 12 44 44 H 1.09000 * 109.47188 * 305.78436 * 14 13 12 45 45 H 0.97006 * 120.00052 * 359.97438 * 17 15 14 46 46 H 0.97009 * 119.99532 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.46144 * 178.24355 * 26 13 12 48 48 H 1.09000 * 109.46259 * 58.27386 * 26 13 12 49 49 H 1.08999 * 109.50063 * 299.24108 * 27 26 13 50 50 H 1.08999 * 109.53519 * 179.14063 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3807 0.0000 4 6 1.6948 2.2108 1.0110 5 8 0.9969 1.8148 1.9203 6 6 2.1979 3.6313 1.0108 7 6 1.5466 4.4517 -0.1268 8 6 1.3310 5.8251 0.4650 9 6 1.4165 5.7945 1.7672 10 6 1.7041 4.3957 2.2608 11 6 2.0417 -0.7245 1.2481 12 6 3.5722 -0.7738 1.2102 13 7 4.0116 -1.4767 -0.0020 14 6 5.4685 -1.6643 -0.0028 15 6 5.8559 -2.5944 1.1180 16 8 5.0023 -3.0552 1.8461 17 7 7.1510 -2.9132 1.3118 18 6 7.5034 -3.7597 2.3310 19 1 6.7433 -4.1706 2.9789 20 6 8.8385 -4.0888 2.5305 21 7 9.7633 -3.5892 1.7418 22 14 9.3188 -5.2416 3.9197 23 1 9.3045 -6.6427 3.4277 24 1 10.6821 -4.8990 4.3984 25 1 8.3515 -5.0997 5.0375 26 6 3.5708 -0.7731 -1.2131 27 6 2.0415 -0.7243 -1.2484 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 2.5775 1.6975 -0.7275 32 1 3.2854 3.6590 0.9399 33 1 0.5936 4.0091 -0.4164 34 1 2.2161 4.5089 -0.9850 35 1 1.1282 6.7145 -0.1131 36 1 1.2982 6.6560 2.4076 37 1 2.4801 4.4150 3.0258 38 1 0.7962 3.9375 2.6533 39 1 1.7153 -0.1887 2.1394 40 1 1.6456 -1.7398 1.2677 41 1 3.9402 -1.3019 2.0899 42 1 3.9679 0.2419 1.2045 43 1 5.7789 -2.0940 -0.9553 44 1 5.9589 -0.7012 0.1383 45 1 7.8337 -2.5444 0.7296 46 1 10.6955 -3.8187 1.8814 47 1 3.9377 -1.3007 -2.0934 48 1 3.9665 0.2426 -1.2074 49 1 1.6455 -1.7396 -1.2680 50 1 1.7144 -0.1887 -2.1396 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671403037.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:22 Heat of formation + Delta-G solvation = -73.457470 kcal Electronic energy + Delta-G solvation = -29919.707091 eV Core-core repulsion = 25945.901097 eV Total energy + Delta-G solvation = -3973.805994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.84947 -40.49582 -39.54806 -38.21920 -36.35682 -35.71601 -33.36660 -33.12906 -31.83901 -30.52311 -29.91533 -29.06930 -27.67712 -25.81906 -24.31530 -23.99651 -22.61951 -21.03400 -20.96595 -20.16338 -19.86728 -19.58797 -18.43181 -17.76136 -17.19700 -16.85493 -16.60680 -16.43117 -16.13815 -15.95736 -15.53565 -15.51806 -15.26577 -15.02201 -14.62439 -14.00102 -13.97225 -13.79699 -13.57294 -13.50478 -13.35040 -13.17974 -13.04231 -12.96136 -12.87532 -12.69072 -12.55595 -12.42534 -12.35610 -12.14661 -12.12927 -12.10251 -12.05818 -11.65488 -11.47410 -11.35408 -10.48497 -10.31101 -10.02698 -9.94660 -9.79666 -9.13261 -8.46898 -5.95019 1.36516 1.36691 1.40172 1.52730 1.67207 2.06597 2.20077 2.28220 2.79930 3.20064 3.38643 3.48111 3.62428 3.70996 3.83275 3.92127 3.97269 4.21274 4.22653 4.30266 4.33789 4.37949 4.49260 4.52988 4.55006 4.61064 4.63778 4.76916 4.78727 4.81910 4.83416 4.86884 4.93063 4.97647 5.01270 5.07263 5.14051 5.17333 5.21389 5.29925 5.35109 5.40738 5.61318 5.66673 5.91338 5.98942 6.10248 6.30549 6.61607 6.64336 7.13772 7.32985 7.57486 8.14317 8.70605 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.002533 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.820305 B =11053.098463 C =11803.823514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.180 3.820 3 N -0.706 5.706 4 C 0.522 3.478 5 O -0.571 6.571 6 C -0.117 4.117 7 C -0.083 4.083 8 C -0.166 4.166 9 C -0.174 4.174 10 C -0.094 4.094 11 C -0.114 4.114 12 C 0.070 3.930 13 N -0.531 5.531 14 C 0.059 3.941 15 C 0.439 3.561 16 O -0.615 6.615 17 N -0.575 5.575 18 C -0.331 4.331 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.276 1.276 26 C 0.051 3.949 27 C -0.108 4.108 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.412 0.588 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.024 0.976 43 H 0.115 0.885 44 H 0.064 0.936 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.095 0.905 48 H 0.048 0.952 49 H 0.082 0.918 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.404 18.910 -11.940 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.094 3.906 3 N -0.359 5.359 4 C 0.309 3.691 5 O -0.451 6.451 6 C -0.138 4.138 7 C -0.120 4.120 8 C -0.184 4.184 9 C -0.192 4.192 10 C -0.131 4.131 11 C -0.153 4.153 12 C -0.058 4.058 13 N -0.257 5.257 14 C -0.072 4.072 15 C 0.227 3.773 16 O -0.501 6.501 17 N -0.213 5.213 18 C -0.461 4.461 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.814 3.186 23 H -0.196 1.196 24 H -0.194 1.194 25 H -0.201 1.201 26 C -0.076 4.076 27 C -0.146 4.146 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.249 0.751 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.042 0.958 43 H 0.133 0.867 44 H 0.082 0.918 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.113 0.887 48 H 0.066 0.934 49 H 0.100 0.900 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.475 17.812 -10.837 25.965 hybrid contribution 1.472 0.206 0.723 1.653 sum -14.003 18.018 -10.114 24.961 Atomic orbital electron populations 1.22099 0.93743 1.02664 1.02685 1.20324 0.94185 0.80794 0.95326 1.46036 1.53381 1.11224 1.25233 1.20733 0.79304 0.87868 0.81193 1.90637 1.39535 1.77674 1.37230 1.22222 1.02495 0.90449 0.98633 1.21315 1.01139 0.92410 0.97106 1.23456 1.00716 0.98251 0.95931 1.23397 1.01541 0.97125 0.97155 1.21270 1.01534 0.93408 0.96889 1.21863 0.94136 1.00215 0.99090 1.21924 0.95921 0.94611 0.93371 1.61466 1.10411 1.50858 1.02921 1.21714 0.89494 0.97841 0.98137 1.20890 0.82324 0.85899 0.88229 1.90475 1.50267 1.58520 1.50873 1.41933 1.06732 1.42859 1.29776 1.19614 0.92930 1.24045 1.09474 0.90642 1.25994 0.94851 0.99559 1.00819 1.69668 1.01786 1.45226 1.39472 0.84969 0.77651 0.78212 0.77758 1.19554 1.19419 1.20065 1.22280 0.96061 0.97168 0.92051 1.21878 0.94348 1.01820 0.96533 0.90776 0.91484 0.92917 0.75110 0.86624 0.90621 0.87931 0.83506 0.84487 0.91288 0.91125 0.91957 0.92072 0.93257 0.95763 0.86684 0.91836 0.77012 0.91315 0.88693 0.93419 0.89973 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.41 71.98 0.61 -2.56 16 2 C 0.18 3.82 0.66 3.68 0.00 3.83 16 3 N -0.71 -12.57 4.16 -422.56 -1.76 -14.33 16 4 C 0.52 11.56 6.48 87.66 0.57 12.13 16 5 O -0.57 -17.58 11.72 -3.02 -0.04 -17.62 16 6 C -0.12 -1.93 3.54 -10.43 -0.04 -1.97 16 7 C -0.08 -0.95 6.37 30.53 0.19 -0.75 16 8 C -0.17 -1.96 10.78 26.25 0.28 -1.68 16 9 C -0.17 -2.55 10.78 26.25 0.28 -2.26 16 10 C -0.09 -1.79 6.18 30.52 0.19 -1.60 16 11 C -0.11 -3.54 4.73 30.69 0.15 -3.39 16 12 C 0.07 2.42 4.96 86.37 0.43 2.85 16 13 N -0.53 -16.74 4.40 -900.62 -3.96 -20.70 16 14 C 0.06 2.03 5.45 85.56 0.47 2.49 16 15 C 0.44 21.24 7.46 87.66 0.65 21.90 16 16 O -0.62 -34.88 13.90 -3.06 -0.04 -34.93 16 17 N -0.58 -29.90 5.29 -306.99 -1.62 -31.52 16 18 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 21 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16 22 Si 0.99 43.70 29.55 68.60 2.03 45.73 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 26 C 0.05 1.02 5.30 86.33 0.46 1.48 16 27 C -0.11 -1.82 4.93 30.65 0.15 -1.67 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.05 1.37 6.17 -2.39 -0.01 1.36 16 31 H 0.41 4.80 7.48 -92.71 -0.69 4.11 16 32 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.08 0.96 7.88 -2.39 -0.02 0.94 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 36 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.70 6.96 -2.39 -0.02 1.68 16 39 H 0.06 2.20 6.13 -2.39 -0.01 2.18 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 2.23 5.78 -2.39 -0.01 2.22 16 42 H 0.02 0.79 7.69 -2.38 -0.02 0.77 16 43 H 0.12 3.34 7.99 -2.39 -0.02 3.32 16 44 H 0.06 1.95 8.12 -2.39 -0.02 1.94 16 45 H 0.40 19.41 7.90 -92.70 -0.73 18.68 16 46 H 0.28 14.09 8.31 -92.70 -0.77 13.32 16 47 H 0.09 1.61 8.01 -2.39 -0.02 1.59 16 48 H 0.05 0.77 7.02 -2.39 -0.02 0.76 16 49 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -74.94 388.43 0.09 -74.85 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -0.47 Total: 37.99 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 5.67 Total: 10.26 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -7.06 Total: -116.28 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -0.08 Total: -52.55 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -74.94 0.09 -74.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671403037.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.392 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds