Wall clock time and date at job start Tue Mar 31 2020 19:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46638 * 2 1 4 4 C 1.52998 * 109.47188 * 240.00531 * 2 1 3 5 5 C 1.47201 * 109.47570 * 120.00000 * 2 1 3 6 6 C 2.64597 * 109.47455 * 120.00005 * 2 1 3 7 7 C 4.07799 * 109.47488 * 119.99938 * 2 1 3 8 8 O 1.21623 * 119.99874 * 142.50975 * 7 6 5 9 9 N 1.34777 * 120.00091 * 322.50547 * 7 6 5 10 10 C 1.46501 * 119.99956 * 180.02562 * 9 7 6 11 11 C 1.52997 * 110.28637 * 60.67426 * 10 9 7 12 12 C 1.54258 * 110.32245 * 298.54957 * 10 9 7 13 13 C 1.54387 * 105.05935 * 241.10208 * 12 10 9 14 14 N 1.48563 * 104.58987 * 23.85336 * 13 12 10 15 15 C 1.46904 * 110.99690 * 200.95893 * 14 13 12 16 16 C 1.50693 * 109.47193 * 176.49197 * 15 14 13 17 17 O 1.21295 * 120.00187 * 6.05949 * 16 15 14 18 18 N 1.34778 * 120.00270 * 186.05842 * 16 15 14 19 19 C 1.37096 * 120.00192 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99931 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00177 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00086 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99848 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47159 * 89.99951 * 23 21 19 25 25 H 1.48495 * 109.46989 * 210.00232 * 23 21 19 26 26 H 1.48511 * 109.46964 * 330.00199 * 23 21 19 27 27 C 1.48556 * 104.22544 * 320.51532 * 14 13 12 28 28 H 1.09002 * 109.47041 * 299.99825 * 1 2 3 29 29 H 1.09000 * 109.47434 * 59.99827 * 1 2 3 30 30 H 1.09000 * 109.46890 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46424 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46940 * 299.99889 * 3 2 1 33 33 H 1.08998 * 109.47655 * 60.00620 * 3 2 1 34 34 H 1.09007 * 109.46996 * 299.99479 * 4 2 1 35 35 H 1.09001 * 109.47705 * 59.99305 * 4 2 1 36 36 H 1.09004 * 109.47462 * 180.02562 * 4 2 1 37 37 H 0.96998 * 120.00191 * 0.02562 * 9 7 6 38 38 H 1.08998 * 109.47392 * 60.70076 * 11 10 9 39 39 H 1.09000 * 109.47323 * 180.70100 * 11 10 9 40 40 H 1.09000 * 109.47255 * 300.69927 * 11 10 9 41 41 H 1.08994 * 110.32588 * 359.97438 * 12 10 9 42 42 H 1.09003 * 110.32679 * 122.20862 * 12 10 9 43 43 H 1.08998 * 110.41330 * 142.63104 * 13 12 10 44 44 H 1.09003 * 110.41089 * 264.95640 * 13 12 10 45 45 H 1.09000 * 109.47383 * 296.49398 * 15 14 13 46 46 H 1.08999 * 109.47004 * 56.48938 * 15 14 13 47 47 H 0.96996 * 119.99945 * 0.02562 * 18 16 15 48 48 H 0.96997 * 119.99749 * 179.97438 * 22 21 19 49 49 H 1.09005 * 110.40980 * 280.71124 * 27 14 13 50 50 H 1.08996 * 110.41153 * 158.26304 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0207 -0.6939 1.2019 6 6 2.4121 -1.2473 2.1604 7 6 2.8895 -1.9223 3.3296 8 8 4.0769 -2.1537 3.4560 9 7 2.0232 -2.3011 4.2900 10 6 2.5117 -2.9912 5.4864 11 6 3.4989 -2.1024 6.2455 12 6 3.1810 -4.3260 5.0993 13 6 2.3473 -5.4137 5.8102 14 7 1.0170 -4.7870 6.0219 15 6 0.2789 -5.4680 7.0940 16 6 -1.0252 -4.7536 7.3382 17 8 -1.3626 -3.8421 6.6125 18 7 -1.8169 -5.1274 8.3629 19 6 -3.0031 -4.4771 8.5854 20 1 -3.3035 -3.6655 7.9391 21 6 -3.8190 -4.8621 9.6422 22 7 -4.9563 -4.2391 9.8551 23 14 -3.2992 -6.2653 10.7603 24 1 -2.5059 -5.7268 11.8943 25 1 -4.5060 -6.9545 11.2835 26 1 -2.4722 -7.2303 9.9918 27 6 1.3300 -3.3845 6.3986 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7215 -1.2491 37 1 1.0762 -2.1169 4.1891 38 1 2.9980 -1.1853 6.5557 39 1 3.8631 -2.6328 7.1254 40 1 4.3391 -1.8557 5.5964 41 1 3.1456 -4.4681 4.0192 42 1 4.2122 -4.3488 5.4517 43 1 2.2553 -6.2965 5.1774 44 1 2.8017 -5.6773 6.7653 45 1 0.0793 -6.4984 6.8000 46 1 0.8743 -5.4596 8.0070 47 1 -1.5470 -5.8560 8.9435 48 1 -5.5260 -4.5082 10.5926 49 1 1.6241 -3.3291 7.4468 50 1 0.4722 -2.7395 6.2089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671645054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:55 Heat of formation + Delta-G solvation = -15.944643 kcal Electronic energy + Delta-G solvation = -28749.234466 eV Core-core repulsion = 24777.922415 eV Total energy + Delta-G solvation = -3971.312051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.48471 -38.90695 -37.88083 -37.58714 -34.63974 -33.93218 -32.70830 -31.72789 -31.19283 -29.58579 -27.69338 -27.65528 -27.58459 -25.63741 -24.38246 -23.65362 -21.44744 -21.21900 -19.63359 -19.38544 -18.49146 -18.28616 -16.61848 -16.20389 -15.70149 -15.47207 -15.17474 -15.09535 -14.81636 -14.66235 -14.57191 -14.51306 -13.81252 -13.44692 -13.17773 -13.03350 -12.83132 -12.81549 -12.55553 -12.54231 -12.27609 -12.11389 -12.07358 -12.04885 -11.95928 -11.67116 -11.62481 -11.52797 -11.35025 -11.06924 -10.89465 -10.87276 -10.62444 -10.49011 -10.43480 -10.03868 -10.01241 -9.58867 -9.13597 -8.62645 -8.24721 -8.15047 -6.34957 -3.86439 1.49491 2.17779 2.99834 3.02015 3.03808 3.12526 3.46202 3.68729 3.96498 3.97179 4.07108 4.43885 4.53455 4.54849 4.57529 4.65150 4.85542 5.07428 5.12630 5.16932 5.21290 5.21955 5.24977 5.37187 5.37384 5.47225 5.47645 5.54782 5.58945 5.65104 5.66149 5.71700 5.72824 5.74578 5.81663 5.87634 5.89514 5.91202 5.94694 6.05890 6.18750 6.30040 6.53483 6.96655 7.05174 7.10356 7.46873 7.54305 8.09923 8.10545 8.55734 8.90896 9.38248 9.78191 10.78014 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.002408 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.726820 B =11627.418308 C =13045.204696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.072 4.072 6 C -0.220 4.220 7 C 0.635 3.365 8 O -0.528 6.528 9 N -0.696 5.696 10 C 0.172 3.828 11 C -0.159 4.159 12 C -0.119 4.119 13 C 0.027 3.973 14 N -0.485 5.485 15 C 0.031 3.969 16 C 0.451 3.549 17 O -0.562 6.562 18 N -0.589 5.589 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.034 3.966 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.410 0.590 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.094 0.906 46 H 0.050 0.950 47 H 0.370 0.630 48 H 0.274 0.726 49 H 0.056 0.944 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.057 4.200 -14.599 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.036 3.964 3 C -0.199 4.199 4 C -0.199 4.199 5 C -0.074 4.074 6 C -0.223 4.223 7 C 0.421 3.579 8 O -0.406 6.406 9 N -0.347 5.347 10 C 0.086 3.914 11 C -0.218 4.218 12 C -0.158 4.158 13 C -0.101 4.101 14 N -0.209 5.209 15 C -0.101 4.101 16 C 0.237 3.763 17 O -0.444 6.444 18 N -0.229 5.229 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.705 3.295 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.094 4.094 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.246 0.754 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.063 0.937 45 H 0.112 0.888 46 H 0.068 0.932 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.074 0.926 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 16.105 4.620 -15.297 22.687 hybrid contribution 0.165 -1.172 1.826 2.176 sum 16.270 3.448 -13.471 21.403 Atomic orbital electron populations 1.21923 0.92043 1.03135 1.02934 1.17945 0.96134 0.94342 0.87951 1.21904 1.01709 0.93387 1.02862 1.21906 1.01722 1.00727 0.95528 1.22503 0.97001 0.93861 0.94034 1.20785 1.01987 1.02617 0.96913 1.14662 0.85399 0.77790 0.80016 1.90805 1.15589 1.55734 1.78495 1.46033 1.11144 1.58395 1.19151 1.21112 0.94192 0.91806 0.84337 1.22208 0.99770 0.99618 1.00163 1.22660 0.98744 0.92694 1.01663 1.23234 0.89306 0.98047 0.99487 1.65206 1.14769 1.01635 1.39258 1.22127 0.95144 0.99357 0.93457 1.19598 0.86178 0.87119 0.83412 1.90517 1.74392 1.31732 1.47791 1.42216 1.20231 1.32820 1.27614 1.19417 0.94107 1.16086 1.13726 0.86253 1.25043 0.95629 0.97972 0.97505 1.69617 1.10954 1.40807 1.30637 0.86682 0.79032 0.82297 0.81447 1.19643 1.20138 1.19468 1.23495 0.97414 0.91964 0.96488 0.91716 0.91168 0.91718 0.91971 0.91133 0.91863 0.91873 0.91149 0.91958 0.75383 0.92210 0.91567 0.90298 0.90517 0.90379 0.89968 0.93732 0.88796 0.93179 0.79699 0.91582 0.92583 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.43 37.16 0.31 -0.72 16 2 C 0.04 0.29 0.95 -157.30 -0.15 0.14 16 3 C -0.14 -0.94 8.43 37.16 0.31 -0.63 16 4 C -0.14 -0.96 8.43 37.16 0.31 -0.64 16 5 C -0.07 -0.81 11.77 -37.12 -0.44 -1.25 16 6 C -0.22 -2.92 13.61 -38.84 -0.53 -3.45 16 7 C 0.63 9.12 6.81 -14.33 -0.10 9.02 16 8 O -0.53 -8.69 14.36 5.26 0.08 -8.62 16 9 N -0.70 -9.33 5.09 -48.73 -0.25 -9.58 16 10 C 0.17 2.27 1.01 -130.44 -0.13 2.13 16 11 C -0.16 -1.93 8.18 37.16 0.30 -1.62 16 12 C -0.12 -1.50 5.48 -25.35 -0.14 -1.63 16 13 C 0.03 0.34 6.49 -2.18 -0.01 0.33 16 14 N -0.48 -7.56 5.18 -231.41 -1.20 -8.76 16 15 C 0.03 0.51 5.39 -4.98 -0.03 0.48 16 16 C 0.45 9.88 7.43 -10.99 -0.08 9.80 16 17 O -0.56 -14.25 14.01 5.54 0.08 -14.17 16 18 N -0.59 -13.68 5.09 -10.96 -0.06 -13.73 16 19 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16 20 H 0.12 3.77 7.39 -52.48 -0.39 3.38 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.35 13.96 55.50 0.77 -24.58 16 23 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 27 C 0.03 0.52 4.78 -2.18 -0.01 0.51 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.41 5.36 8.23 -40.82 -0.34 5.02 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.04 6.27 -51.93 -0.33 0.72 16 41 H 0.08 1.06 7.31 -51.93 -0.38 0.68 16 42 H 0.08 0.90 7.71 -51.93 -0.40 0.50 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.04 0.49 7.92 -51.93 -0.41 0.08 16 45 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.05 0.71 7.98 -51.93 -0.41 0.30 16 47 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 48 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16 50 H 0.11 1.98 6.14 -51.93 -0.32 1.66 16 LS Contribution 405.55 15.07 6.11 6.11 Total: -1.00 -32.85 405.55 -8.07 -40.92 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -8.27 Total: 13.14 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.62 Total: 4.92 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.73 Total: -56.65 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.15 Total: -22.79 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.85 -8.07 -40.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671645054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.974 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds