Wall clock time and date at job start Tue Mar 31 2020 19:33:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53005 * 109.46638 * 2 1
4 4 C 1.52998 * 109.47188 * 240.00531 * 2 1 3
5 5 C 1.47201 * 109.47570 * 120.00000 * 2 1 3
6 6 C 2.64597 * 109.47455 * 120.00005 * 2 1 3
7 7 C 4.07799 * 109.47488 * 119.99938 * 2 1 3
8 8 O 1.21623 * 119.99874 * 142.50975 * 7 6 5
9 9 N 1.34777 * 120.00091 * 322.50547 * 7 6 5
10 10 C 1.46501 * 119.99956 * 180.02562 * 9 7 6
11 11 C 1.52997 * 110.28637 * 60.67426 * 10 9 7
12 12 C 1.54258 * 110.32245 * 298.54957 * 10 9 7
13 13 C 1.54387 * 105.05935 * 241.10208 * 12 10 9
14 14 N 1.48563 * 104.58987 * 23.85336 * 13 12 10
15 15 C 1.46904 * 110.99690 * 200.95893 * 14 13 12
16 16 C 1.50693 * 109.47193 * 176.49197 * 15 14 13
17 17 O 1.21295 * 120.00187 * 6.05949 * 16 15 14
18 18 N 1.34778 * 120.00270 * 186.05842 * 16 15 14
19 19 C 1.37096 * 120.00192 * 179.97438 * 18 16 15
20 20 H 1.08007 * 119.99931 * 0.02562 * 19 18 16
21 21 C 1.38954 * 120.00177 * 180.02562 * 19 18 16
22 22 N 1.31410 * 120.00086 * 180.02562 * 21 19 18
23 23 Si 1.86800 * 119.99848 * 0.02562 * 21 19 18
24 24 H 1.48500 * 109.47159 * 89.99951 * 23 21 19
25 25 H 1.48495 * 109.46989 * 210.00232 * 23 21 19
26 26 H 1.48511 * 109.46964 * 330.00199 * 23 21 19
27 27 C 1.48556 * 104.22544 * 320.51532 * 14 13 12
28 28 H 1.09002 * 109.47041 * 299.99825 * 1 2 3
29 29 H 1.09000 * 109.47434 * 59.99827 * 1 2 3
30 30 H 1.09000 * 109.46890 * 180.02562 * 1 2 3
31 31 H 1.09004 * 109.46424 * 180.02562 * 3 2 1
32 32 H 1.09001 * 109.46940 * 299.99889 * 3 2 1
33 33 H 1.08998 * 109.47655 * 60.00620 * 3 2 1
34 34 H 1.09007 * 109.46996 * 299.99479 * 4 2 1
35 35 H 1.09001 * 109.47705 * 59.99305 * 4 2 1
36 36 H 1.09004 * 109.47462 * 180.02562 * 4 2 1
37 37 H 0.96998 * 120.00191 * 0.02562 * 9 7 6
38 38 H 1.08998 * 109.47392 * 60.70076 * 11 10 9
39 39 H 1.09000 * 109.47323 * 180.70100 * 11 10 9
40 40 H 1.09000 * 109.47255 * 300.69927 * 11 10 9
41 41 H 1.08994 * 110.32588 * 359.97438 * 12 10 9
42 42 H 1.09003 * 110.32679 * 122.20862 * 12 10 9
43 43 H 1.08998 * 110.41330 * 142.63104 * 13 12 10
44 44 H 1.09003 * 110.41089 * 264.95640 * 13 12 10
45 45 H 1.09000 * 109.47383 * 296.49398 * 15 14 13
46 46 H 1.08999 * 109.47004 * 56.48938 * 15 14 13
47 47 H 0.96996 * 119.99945 * 0.02562 * 18 16 15
48 48 H 0.96997 * 119.99749 * 179.97438 * 22 21 19
49 49 H 1.09005 * 110.40980 * 280.71124 * 27 14 13
50 50 H 1.08996 * 110.41153 * 158.26304 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0400 -0.7211 -1.2493
5 6 2.0207 -0.6939 1.2019
6 6 2.4121 -1.2473 2.1604
7 6 2.8895 -1.9223 3.3296
8 8 4.0769 -2.1537 3.4560
9 7 2.0232 -2.3011 4.2900
10 6 2.5117 -2.9912 5.4864
11 6 3.4989 -2.1024 6.2455
12 6 3.1810 -4.3260 5.0993
13 6 2.3473 -5.4137 5.8102
14 7 1.0170 -4.7870 6.0219
15 6 0.2789 -5.4680 7.0940
16 6 -1.0252 -4.7536 7.3382
17 8 -1.3626 -3.8421 6.6125
18 7 -1.8169 -5.1274 8.3629
19 6 -3.0031 -4.4771 8.5854
20 1 -3.3035 -3.6655 7.9391
21 6 -3.8190 -4.8621 9.6422
22 7 -4.9563 -4.2391 9.8551
23 14 -3.2992 -6.2653 10.7603
24 1 -2.5059 -5.7268 11.8943
25 1 -4.5060 -6.9545 11.2835
26 1 -2.4722 -7.2303 9.9918
27 6 1.3300 -3.3845 6.3986
28 1 -0.3633 0.5138 0.8900
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0277 0.0005
31 1 3.1299 1.4425 -0.0005
32 1 1.6765 1.9564 -0.8900
33 1 1.6766 1.9564 0.8900
34 1 1.6767 -1.7489 -1.2493
35 1 1.6766 -0.2073 -2.1393
36 1 3.1300 -0.7215 -1.2491
37 1 1.0762 -2.1169 4.1891
38 1 2.9980 -1.1853 6.5557
39 1 3.8631 -2.6328 7.1254
40 1 4.3391 -1.8557 5.5964
41 1 3.1456 -4.4681 4.0192
42 1 4.2122 -4.3488 5.4517
43 1 2.2553 -6.2965 5.1774
44 1 2.8017 -5.6773 6.7653
45 1 0.0793 -6.4984 6.8000
46 1 0.8743 -5.4596 8.0070
47 1 -1.5470 -5.8560 8.9435
48 1 -5.5260 -4.5082 10.5926
49 1 1.6241 -3.3291 7.4468
50 1 0.4722 -2.7395 6.2089
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001671645054.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:33:55
Heat of formation + Delta-G solvation = -15.944643 kcal
Electronic energy + Delta-G solvation = -28749.234466 eV
Core-core repulsion = 24777.922415 eV
Total energy + Delta-G solvation = -3971.312051 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-40.48471 -38.90695 -37.88083 -37.58714 -34.63974 -33.93218 -32.70830 -31.72789
-31.19283 -29.58579 -27.69338 -27.65528 -27.58459 -25.63741 -24.38246 -23.65362
-21.44744 -21.21900 -19.63359 -19.38544 -18.49146 -18.28616 -16.61848 -16.20389
-15.70149 -15.47207 -15.17474 -15.09535 -14.81636 -14.66235 -14.57191 -14.51306
-13.81252 -13.44692 -13.17773 -13.03350 -12.83132 -12.81549 -12.55553 -12.54231
-12.27609 -12.11389 -12.07358 -12.04885 -11.95928 -11.67116 -11.62481 -11.52797
-11.35025 -11.06924 -10.89465 -10.87276 -10.62444 -10.49011 -10.43480 -10.03868
-10.01241 -9.58867 -9.13597 -8.62645 -8.24721 -8.15047 -6.34957 -3.86439
1.49491 2.17779 2.99834 3.02015 3.03808 3.12526 3.46202 3.68729
3.96498 3.97179 4.07108 4.43885 4.53455 4.54849 4.57529 4.65150
4.85542 5.07428 5.12630 5.16932 5.21290 5.21955 5.24977 5.37187
5.37384 5.47225 5.47645 5.54782 5.58945 5.65104 5.66149 5.71700
5.72824 5.74578 5.81663 5.87634 5.89514 5.91202 5.94694 6.05890
6.18750 6.30040 6.53483 6.96655 7.05174 7.10356 7.46873 7.54305
8.09923 8.10545 8.55734 8.90896 9.38248 9.78191 10.78014
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.013364 B = 0.002408 C = 0.002146
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2094.726820 B =11627.418308 C =13045.204696
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.036 3.964
3 C -0.141 4.141
4 C -0.142 4.142
5 C -0.072 4.072
6 C -0.220 4.220
7 C 0.635 3.365
8 O -0.528 6.528
9 N -0.696 5.696
10 C 0.172 3.828
11 C -0.159 4.159
12 C -0.119 4.119
13 C 0.027 3.973
14 N -0.485 5.485
15 C 0.031 3.969
16 C 0.451 3.549
17 O -0.562 6.562
18 N -0.589 5.589
19 C -0.305 4.305
20 H 0.120 0.880
21 C 0.042 3.958
22 N -0.880 5.880
23 Si 0.879 3.121
24 H -0.271 1.271
25 H -0.276 1.276
26 H -0.269 1.269
27 C 0.034 3.966
28 H 0.064 0.936
29 H 0.069 0.931
30 H 0.064 0.936
31 H 0.061 0.939
32 H 0.070 0.930
33 H 0.062 0.938
34 H 0.062 0.938
35 H 0.070 0.930
36 H 0.061 0.939
37 H 0.410 0.590
38 H 0.059 0.941
39 H 0.065 0.935
40 H 0.078 0.922
41 H 0.076 0.924
42 H 0.078 0.922
43 H 0.082 0.918
44 H 0.044 0.956
45 H 0.094 0.906
46 H 0.050 0.950
47 H 0.370 0.630
48 H 0.274 0.726
49 H 0.056 0.944
50 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.057 4.200 -14.599 22.104
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C 0.036 3.964
3 C -0.199 4.199
4 C -0.199 4.199
5 C -0.074 4.074
6 C -0.223 4.223
7 C 0.421 3.579
8 O -0.406 6.406
9 N -0.347 5.347
10 C 0.086 3.914
11 C -0.218 4.218
12 C -0.158 4.158
13 C -0.101 4.101
14 N -0.209 5.209
15 C -0.101 4.101
16 C 0.237 3.763
17 O -0.444 6.444
18 N -0.229 5.229
19 C -0.433 4.433
20 H 0.137 0.863
21 C -0.161 4.161
22 N -0.520 5.520
23 Si 0.705 3.295
24 H -0.196 1.196
25 H -0.201 1.201
26 H -0.195 1.195
27 C -0.094 4.094
28 H 0.083 0.917
29 H 0.088 0.912
30 H 0.083 0.917
31 H 0.080 0.920
32 H 0.089 0.911
33 H 0.081 0.919
34 H 0.081 0.919
35 H 0.089 0.911
36 H 0.080 0.920
37 H 0.246 0.754
38 H 0.078 0.922
39 H 0.084 0.916
40 H 0.097 0.903
41 H 0.095 0.905
42 H 0.096 0.904
43 H 0.100 0.900
44 H 0.063 0.937
45 H 0.112 0.888
46 H 0.068 0.932
47 H 0.203 0.797
48 H 0.084 0.916
49 H 0.074 0.926
50 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 16.105 4.620 -15.297 22.687
hybrid contribution 0.165 -1.172 1.826 2.176
sum 16.270 3.448 -13.471 21.403
Atomic orbital electron populations
1.21923 0.92043 1.03135 1.02934 1.17945 0.96134 0.94342 0.87951
1.21904 1.01709 0.93387 1.02862 1.21906 1.01722 1.00727 0.95528
1.22503 0.97001 0.93861 0.94034 1.20785 1.01987 1.02617 0.96913
1.14662 0.85399 0.77790 0.80016 1.90805 1.15589 1.55734 1.78495
1.46033 1.11144 1.58395 1.19151 1.21112 0.94192 0.91806 0.84337
1.22208 0.99770 0.99618 1.00163 1.22660 0.98744 0.92694 1.01663
1.23234 0.89306 0.98047 0.99487 1.65206 1.14769 1.01635 1.39258
1.22127 0.95144 0.99357 0.93457 1.19598 0.86178 0.87119 0.83412
1.90517 1.74392 1.31732 1.47791 1.42216 1.20231 1.32820 1.27614
1.19417 0.94107 1.16086 1.13726 0.86253 1.25043 0.95629 0.97972
0.97505 1.69617 1.10954 1.40807 1.30637 0.86682 0.79032 0.82297
0.81447 1.19643 1.20138 1.19468 1.23495 0.97414 0.91964 0.96488
0.91716 0.91168 0.91718 0.91971 0.91133 0.91863 0.91873 0.91149
0.91958 0.75383 0.92210 0.91567 0.90298 0.90517 0.90379 0.89968
0.93732 0.88796 0.93179 0.79699 0.91582 0.92583 0.87062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.03 8.43 37.16 0.31 -0.72 16
2 C 0.04 0.29 0.95 -157.30 -0.15 0.14 16
3 C -0.14 -0.94 8.43 37.16 0.31 -0.63 16
4 C -0.14 -0.96 8.43 37.16 0.31 -0.64 16
5 C -0.07 -0.81 11.77 -37.12 -0.44 -1.25 16
6 C -0.22 -2.92 13.61 -38.84 -0.53 -3.45 16
7 C 0.63 9.12 6.81 -14.33 -0.10 9.02 16
8 O -0.53 -8.69 14.36 5.26 0.08 -8.62 16
9 N -0.70 -9.33 5.09 -48.73 -0.25 -9.58 16
10 C 0.17 2.27 1.01 -130.44 -0.13 2.13 16
11 C -0.16 -1.93 8.18 37.16 0.30 -1.62 16
12 C -0.12 -1.50 5.48 -25.35 -0.14 -1.63 16
13 C 0.03 0.34 6.49 -2.18 -0.01 0.33 16
14 N -0.48 -7.56 5.18 -231.41 -1.20 -8.76 16
15 C 0.03 0.51 5.39 -4.98 -0.03 0.48 16
16 C 0.45 9.88 7.43 -10.99 -0.08 9.80 16
17 O -0.56 -14.25 14.01 5.54 0.08 -14.17 16
18 N -0.59 -13.68 5.09 -10.96 -0.06 -13.73 16
19 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16
20 H 0.12 3.77 7.39 -52.48 -0.39 3.38 16
21 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16
22 N -0.88 -25.35 13.96 55.50 0.77 -24.58 16
23 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16
24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16
25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16
26 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16
27 C 0.03 0.52 4.78 -2.18 -0.01 0.51 16
28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
34 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16
35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
37 H 0.41 5.36 8.23 -40.82 -0.34 5.02 16
38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
40 H 0.08 1.04 6.27 -51.93 -0.33 0.72 16
41 H 0.08 1.06 7.31 -51.93 -0.38 0.68 16
42 H 0.08 0.90 7.71 -51.93 -0.40 0.50 16
43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
44 H 0.04 0.49 7.92 -51.93 -0.41 0.08 16
45 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16
46 H 0.05 0.71 7.98 -51.93 -0.41 0.30 16
47 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16
48 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16
49 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16
50 H 0.11 1.98 6.14 -51.93 -0.32 1.66 16
LS Contribution 405.55 15.07 6.11 6.11
Total: -1.00 -32.85 405.55 -8.07 -40.92
By element:
Atomic # 1 Polarization: 21.41 SS G_CDS: -8.27 Total: 13.14 kcal
Atomic # 6 Polarization: 5.54 SS G_CDS: -0.62 Total: 4.92 kcal
Atomic # 7 Polarization: -55.92 SS G_CDS: -0.73 Total: -56.65 kcal
Atomic # 8 Polarization: -22.95 SS G_CDS: 0.15 Total: -22.79 kcal
Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -32.85 -8.07 -40.92 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001671645054.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.974 kcal
(2) G-P(sol) polarization free energy of solvation -32.847 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.874 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.945 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds