Wall clock time and date at job start Tue Mar 31 2020 19:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46638 * 2 1 4 4 C 1.52998 * 109.47188 * 240.00531 * 2 1 3 5 5 C 1.47201 * 109.47570 * 120.00000 * 2 1 3 6 6 C 2.64597 * 109.47455 * 120.00005 * 2 1 3 7 7 C 4.07799 * 109.47488 * 119.99938 * 2 1 3 8 8 O 1.21623 * 119.99874 * 142.50975 * 7 6 5 9 9 N 1.34777 * 120.00091 * 322.50547 * 7 6 5 10 10 C 1.46501 * 119.99956 * 180.02562 * 9 7 6 11 11 C 1.52997 * 110.28637 * 60.67426 * 10 9 7 12 12 C 1.54258 * 110.32245 * 298.54957 * 10 9 7 13 13 C 1.54387 * 105.05935 * 241.10208 * 12 10 9 14 14 N 1.48563 * 104.58987 * 23.85336 * 13 12 10 15 15 C 1.46904 * 110.99690 * 200.95893 * 14 13 12 16 16 C 1.50693 * 109.47193 * 176.49197 * 15 14 13 17 17 O 1.21295 * 120.00187 * 6.05949 * 16 15 14 18 18 N 1.34778 * 120.00270 * 186.05842 * 16 15 14 19 19 C 1.37096 * 120.00192 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99931 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00177 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00086 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99848 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47159 * 89.99951 * 23 21 19 25 25 H 1.48495 * 109.46989 * 210.00232 * 23 21 19 26 26 H 1.48511 * 109.46964 * 330.00199 * 23 21 19 27 27 C 1.48556 * 104.22544 * 320.51532 * 14 13 12 28 28 H 1.09002 * 109.47041 * 299.99825 * 1 2 3 29 29 H 1.09000 * 109.47434 * 59.99827 * 1 2 3 30 30 H 1.09000 * 109.46890 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46424 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46940 * 299.99889 * 3 2 1 33 33 H 1.08998 * 109.47655 * 60.00620 * 3 2 1 34 34 H 1.09007 * 109.46996 * 299.99479 * 4 2 1 35 35 H 1.09001 * 109.47705 * 59.99305 * 4 2 1 36 36 H 1.09004 * 109.47462 * 180.02562 * 4 2 1 37 37 H 0.96998 * 120.00191 * 0.02562 * 9 7 6 38 38 H 1.08998 * 109.47392 * 60.70076 * 11 10 9 39 39 H 1.09000 * 109.47323 * 180.70100 * 11 10 9 40 40 H 1.09000 * 109.47255 * 300.69927 * 11 10 9 41 41 H 1.08994 * 110.32588 * 359.97438 * 12 10 9 42 42 H 1.09003 * 110.32679 * 122.20862 * 12 10 9 43 43 H 1.08998 * 110.41330 * 142.63104 * 13 12 10 44 44 H 1.09003 * 110.41089 * 264.95640 * 13 12 10 45 45 H 1.09000 * 109.47383 * 296.49398 * 15 14 13 46 46 H 1.08999 * 109.47004 * 56.48938 * 15 14 13 47 47 H 0.96996 * 119.99945 * 0.02562 * 18 16 15 48 48 H 0.96997 * 119.99749 * 179.97438 * 22 21 19 49 49 H 1.09005 * 110.40980 * 280.71124 * 27 14 13 50 50 H 1.08996 * 110.41153 * 158.26304 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0207 -0.6939 1.2019 6 6 2.4121 -1.2473 2.1604 7 6 2.8895 -1.9223 3.3296 8 8 4.0769 -2.1537 3.4560 9 7 2.0232 -2.3011 4.2900 10 6 2.5117 -2.9912 5.4864 11 6 3.4989 -2.1024 6.2455 12 6 3.1810 -4.3260 5.0993 13 6 2.3473 -5.4137 5.8102 14 7 1.0170 -4.7870 6.0219 15 6 0.2789 -5.4680 7.0940 16 6 -1.0252 -4.7536 7.3382 17 8 -1.3626 -3.8421 6.6125 18 7 -1.8169 -5.1274 8.3629 19 6 -3.0031 -4.4771 8.5854 20 1 -3.3035 -3.6655 7.9391 21 6 -3.8190 -4.8621 9.6422 22 7 -4.9563 -4.2391 9.8551 23 14 -3.2992 -6.2653 10.7603 24 1 -2.5059 -5.7268 11.8943 25 1 -4.5060 -6.9545 11.2835 26 1 -2.4722 -7.2303 9.9918 27 6 1.3300 -3.3845 6.3986 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7215 -1.2491 37 1 1.0762 -2.1169 4.1891 38 1 2.9980 -1.1853 6.5557 39 1 3.8631 -2.6328 7.1254 40 1 4.3391 -1.8557 5.5964 41 1 3.1456 -4.4681 4.0192 42 1 4.2122 -4.3488 5.4517 43 1 2.2553 -6.2965 5.1774 44 1 2.8017 -5.6773 6.7653 45 1 0.0793 -6.4984 6.8000 46 1 0.8743 -5.4596 8.0070 47 1 -1.5470 -5.8560 8.9435 48 1 -5.5260 -4.5082 10.5926 49 1 1.6241 -3.3291 7.4468 50 1 0.4722 -2.7395 6.2089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671645054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:54 Heat of formation + Delta-G solvation = -40.296511 kcal Electronic energy + Delta-G solvation = -28750.290443 eV Core-core repulsion = 24777.922415 eV Total energy + Delta-G solvation = -3972.368027 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.62432 -40.41377 -39.10131 -38.46865 -36.10508 -35.60145 -33.79436 -33.65579 -32.29803 -30.66102 -28.94700 -28.22681 -28.22381 -27.06734 -25.68799 -24.94399 -22.53721 -22.11857 -21.24856 -20.68944 -20.16252 -19.51344 -17.93152 -17.27624 -16.96257 -16.87054 -16.51984 -16.35565 -16.09197 -15.80748 -15.28490 -15.23769 -15.15610 -15.04834 -14.71562 -14.35976 -14.14228 -13.87516 -13.51545 -13.41591 -13.34405 -13.31435 -13.06139 -13.02825 -12.76682 -12.69657 -12.64578 -12.41625 -12.34723 -12.29607 -12.24953 -12.00347 -11.97173 -11.87791 -11.47066 -11.37804 -11.31354 -11.13133 -10.36772 -10.23549 -10.22355 -9.40211 -8.40509 -6.00849 0.46114 1.20126 1.30752 1.35511 1.44574 1.95841 2.01840 2.23317 2.42055 2.65410 3.05502 3.15944 3.17995 3.37799 3.73180 3.92406 3.93928 3.96141 4.00388 4.16003 4.20823 4.28717 4.29668 4.40805 4.50731 4.59111 4.69227 4.71642 4.71939 4.72142 4.77610 4.81030 4.93302 4.93468 4.93879 5.01185 5.04620 5.14594 5.17421 5.22346 5.33250 5.33783 5.44290 5.53271 5.79934 5.89631 6.01643 6.15004 6.35511 6.60425 6.89425 6.99009 7.40793 7.97289 8.76950 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.002408 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.726820 B =11627.418308 C =13045.204696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.030 3.970 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.046 4.046 6 C -0.270 4.270 7 C 0.637 3.363 8 O -0.554 6.554 9 N -0.695 5.695 10 C 0.171 3.829 11 C -0.153 4.153 12 C -0.114 4.114 13 C 0.034 3.966 14 N -0.508 5.508 15 C 0.042 3.958 16 C 0.451 3.549 17 O -0.604 6.604 18 N -0.592 5.592 19 C -0.324 4.324 20 H 0.057 0.943 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.962 3.038 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.231 1.231 27 C 0.039 3.961 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.408 0.592 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.121 0.879 46 H 0.085 0.915 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.064 0.936 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.162 2.196 -14.506 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 C -0.197 4.197 4 C -0.197 4.197 5 C -0.048 4.048 6 C -0.273 4.273 7 C 0.424 3.576 8 O -0.434 6.434 9 N -0.344 5.344 10 C 0.085 3.915 11 C -0.211 4.211 12 C -0.152 4.152 13 C -0.093 4.093 14 N -0.233 5.233 15 C -0.089 4.089 16 C 0.239 3.761 17 O -0.488 6.488 18 N -0.234 5.234 19 C -0.453 4.453 20 H 0.075 0.925 21 C -0.214 4.214 22 N -0.575 5.575 23 Si 0.783 3.217 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.154 1.154 27 C -0.089 4.089 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.244 0.756 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.139 0.861 46 H 0.102 0.898 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.232 2.605 -15.218 23.892 hybrid contribution -0.539 -0.397 1.631 1.763 sum 17.693 2.208 -13.587 22.418 Atomic orbital electron populations 1.21943 0.91253 1.02893 1.03858 1.18296 0.96728 0.95051 0.86963 1.21922 1.01543 0.92308 1.03890 1.21923 1.01541 1.00536 0.95683 1.23402 0.95259 0.92264 0.93900 1.20858 1.04086 1.04511 0.97869 1.14753 0.85081 0.77439 0.80283 1.90769 1.16451 1.57027 1.79173 1.46068 1.10983 1.58141 1.19255 1.21184 0.93720 0.92576 0.84001 1.22163 0.98920 0.99571 1.00487 1.22623 0.99561 0.92246 1.00801 1.23281 0.87323 0.97812 1.00898 1.65159 1.16903 1.01896 1.39343 1.22073 0.91998 0.99433 0.95406 1.20802 0.87464 0.86138 0.81724 1.90517 1.75707 1.33596 1.48959 1.42041 1.19136 1.33419 1.28774 1.18982 0.96627 1.15909 1.13815 0.92507 1.26095 0.95048 1.01329 0.98972 1.69801 1.12719 1.43212 1.31817 0.85396 0.79204 0.78229 0.78903 1.18197 1.20221 1.15414 1.23337 0.96628 0.91636 0.97280 0.92511 0.88567 0.92566 0.92279 0.88512 0.92475 0.92538 0.88503 0.92289 0.75569 0.92511 0.89506 0.91379 0.92099 0.88937 0.88794 0.91114 0.86086 0.89750 0.77566 0.91221 0.91781 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.43 71.98 0.61 -1.30 16 2 C 0.03 0.45 0.95 -53.99 -0.05 0.40 16 3 C -0.14 -1.65 8.43 71.98 0.61 -1.05 16 4 C -0.14 -1.67 8.43 71.98 0.61 -1.06 16 5 C -0.05 -1.05 11.77 31.13 0.37 -0.69 16 6 C -0.27 -7.52 13.61 30.02 0.41 -7.11 16 7 C 0.64 19.10 6.81 85.49 0.58 19.68 16 8 O -0.55 -18.73 14.36 -4.10 -0.06 -18.79 16 9 N -0.69 -19.43 5.09 -426.34 -2.17 -21.60 16 10 C 0.17 4.46 1.01 4.50 0.00 4.47 16 11 C -0.15 -3.60 8.18 71.98 0.59 -3.01 16 12 C -0.11 -2.68 5.48 31.49 0.17 -2.51 16 13 C 0.03 0.73 6.49 86.45 0.56 1.30 16 14 N -0.51 -14.92 5.18 -886.04 -4.59 -19.52 16 15 C 0.04 1.24 5.39 85.55 0.46 1.70 16 16 C 0.45 19.59 7.43 87.65 0.65 20.24 16 17 O -0.60 -31.85 14.01 -3.08 -0.04 -31.90 16 18 N -0.59 -27.10 5.09 -306.98 -1.56 -28.66 16 19 C -0.32 -18.59 10.16 84.04 0.85 -17.73 16 20 H 0.06 3.89 7.39 -2.91 -0.02 3.86 16 21 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 22 N -0.93 -55.81 13.96 21.66 0.30 -55.50 16 23 Si 0.96 38.15 27.74 68.60 1.90 40.05 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 25 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.23 -7.66 6.52 99.48 0.65 -7.01 16 27 C 0.04 1.18 4.78 86.45 0.41 1.59 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.41 11.54 8.23 -92.71 -0.76 10.77 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 1.78 6.27 -2.39 -0.01 1.77 16 41 H 0.06 1.64 7.31 -2.39 -0.02 1.62 16 42 H 0.09 1.93 7.71 -2.39 -0.02 1.91 16 43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.07 1.21 7.92 -2.39 -0.02 1.19 16 45 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 46 H 0.08 1.98 7.98 -2.39 -0.02 1.96 16 47 H 0.39 14.72 5.76 -92.71 -0.53 14.19 16 48 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 49 H 0.06 1.78 7.68 -2.38 -0.02 1.76 16 50 H 0.08 2.82 6.14 -2.39 -0.01 2.81 16 Total: -1.00 -77.67 405.55 0.68 -76.99 By element: Atomic # 1 Polarization: 44.81 SS G_CDS: -0.40 Total: 44.41 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 7.30 Total: 14.52 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -8.02 Total: -125.29 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.10 Total: -50.69 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.90 Total: 40.05 kcal Total: -77.67 0.68 -76.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671645054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.692 kcal (2) G-P(sol) polarization free energy of solvation -77.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds