Wall clock time and date at job start Tue Mar 31 2020 19:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.88359 * 2 1 4 4 N 1.46899 * 109.47675 * 62.42386 * 3 2 1 5 5 C 1.46894 * 111.00397 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47172 * 180.02562 * 5 4 3 7 7 O 1.21294 * 120.00064 * 0.02562 * 6 5 4 8 8 N 1.34783 * 120.00064 * 179.97438 * 6 5 4 9 9 C 1.37092 * 120.00121 * 179.97438 * 8 6 5 10 10 H 1.08002 * 120.00066 * 0.02562 * 9 8 6 11 11 C 1.38951 * 120.00384 * 180.02562 * 9 8 6 12 12 N 1.31410 * 119.99350 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00447 * 180.02562 * 11 9 8 14 14 H 1.48512 * 109.47002 * 89.99961 * 13 11 9 15 15 H 1.48496 * 109.47669 * 210.00115 * 13 11 9 16 16 H 1.48504 * 109.47241 * 330.00755 * 13 11 9 17 17 C 1.55158 * 111.00657 * 123.87805 * 2 1 3 18 18 C 1.54324 * 102.94106 * 82.60756 * 17 2 1 19 19 N 1.47027 * 107.26893 * 22.19669 * 18 17 2 20 20 C 1.34775 * 125.64451 * 181.01727 * 19 18 17 21 21 O 1.21286 * 119.99711 * 180.02562 * 20 19 18 22 22 C 1.50697 * 120.00215 * 0.02606 * 20 19 18 23 23 H 1.09002 * 115.54932 * 34.41541 * 22 20 19 24 24 C 1.53005 * 117.49759 * 248.74266 * 22 20 19 25 25 C 1.52995 * 117.49757 * 180.08595 * 22 20 19 26 26 C 1.52999 * 138.58973 * 336.62058 * 25 22 20 27 27 C 1.52992 * 138.58961 * 238.40159 * 25 22 20 28 28 C 1.47424 * 108.70283 * 1.28648 * 19 18 17 29 29 H 1.09002 * 109.47467 * 297.57458 * 1 2 3 30 30 H 1.08999 * 109.46919 * 57.57652 * 1 2 3 31 31 H 1.09003 * 109.46831 * 177.57633 * 1 2 3 32 32 H 1.09005 * 109.47118 * 182.42927 * 3 2 1 33 33 H 1.09001 * 109.47388 * 302.42417 * 3 2 1 34 34 H 1.00905 * 110.99503 * 56.04301 * 4 3 2 35 35 H 1.09004 * 109.47308 * 300.00420 * 5 4 3 36 36 H 1.09003 * 109.46717 * 60.00585 * 5 4 3 37 37 H 0.97003 * 119.99734 * 0.02562 * 8 6 5 38 38 H 0.97011 * 119.99913 * 179.97438 * 12 11 9 39 39 H 1.09008 * 110.71600 * 324.25299 * 17 2 1 40 40 H 1.08989 * 110.87353 * 201.04913 * 17 2 1 41 41 H 1.08992 * 109.88826 * 262.77735 * 18 17 2 42 42 H 1.08995 * 109.87805 * 141.60879 * 18 17 2 43 43 H 1.09000 * 117.49916 * 359.97438 * 24 22 20 44 44 H 1.08994 * 117.49460 * 144.99937 * 24 22 20 45 45 H 1.08994 * 117.49863 * 336.59580 * 26 25 22 46 46 H 1.08996 * 117.49928 * 121.61806 * 26 25 22 47 47 H 1.08994 * 117.50298 * 238.38849 * 27 25 22 48 48 H 1.09002 * 117.49768 * 23.38316 * 27 25 22 49 49 H 1.08997 * 110.37152 * 94.48480 * 28 19 18 50 50 H 1.09005 * 110.36246 * 216.80524 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 7 1.6510 2.1156 1.2276 5 6 2.1580 3.4938 1.2626 6 6 1.7040 4.1640 2.5337 7 8 1.0251 3.5534 3.3322 8 7 2.0530 5.4416 2.7838 9 6 1.6395 6.0515 3.9398 10 1 1.0344 5.5081 4.6504 11 6 1.9989 7.3688 4.1974 12 7 2.7347 8.0301 3.3326 13 14 1.4361 8.1995 5.7730 14 1 2.4465 7.9766 6.8383 15 1 1.2802 9.6571 5.5357 16 1 0.1342 7.6251 6.1977 17 6 2.0862 -0.8074 1.2025 18 6 2.0295 -2.2642 0.6966 19 7 2.0153 -2.2157 -0.7728 20 6 1.9494 -3.2829 -1.5933 21 8 1.9446 -3.1239 -2.7957 22 6 1.8817 -4.6736 -1.0168 23 1 1.3303 -4.7683 -0.0813 24 6 3.0979 -5.5805 -1.2151 25 6 1.8106 -5.8433 -2.0004 26 6 1.3808 -6.1027 -3.4457 27 6 0.8825 -7.0158 -2.3237 28 6 2.0917 -0.8068 -1.2000 29 1 -0.3634 0.4757 0.9109 30 1 -0.3633 0.5510 -0.8675 31 1 -0.3633 -1.0268 -0.0435 32 1 3.1643 1.4029 -0.0436 33 1 1.6901 1.9654 -0.8674 34 1 1.9410 1.6031 2.0470 35 1 3.2474 3.4812 1.2280 36 1 1.7736 4.0443 0.4039 37 1 2.5962 5.9298 2.1453 38 1 2.9854 8.9499 3.5122 39 1 1.4519 -0.6789 2.0797 40 1 3.1127 -0.5159 1.4246 41 1 1.1230 -2.7480 1.0602 42 1 2.9074 -2.8106 1.0410 43 1 3.9468 -5.1714 -1.7628 44 1 3.3466 -6.2719 -0.4100 45 1 0.6632 -5.4124 -3.8890 46 1 2.1285 -6.5064 -4.1283 47 1 1.3023 -8.0202 -2.2682 48 1 -0.1630 -6.9264 -2.0285 49 1 3.1261 -0.5259 -1.3982 50 1 1.4775 -0.6452 -2.0860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671784564.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:48 Heat of formation + Delta-G solvation = -10.587125 kcal Electronic energy + Delta-G solvation = -28309.930603 eV Core-core repulsion = 24338.850871 eV Total energy + Delta-G solvation = -3971.079732 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.67555 -39.12933 -38.21102 -37.37665 -35.43184 -33.91324 -33.13393 -32.35033 -31.20545 -29.92475 -27.52156 -27.34967 -25.18265 -24.10750 -23.20532 -22.75220 -22.71902 -20.25586 -19.60056 -19.15962 -18.58040 -17.89952 -17.42008 -16.62399 -15.85253 -15.70172 -15.48732 -15.35700 -15.14847 -14.84368 -14.58151 -14.34125 -14.14109 -13.81075 -13.54818 -13.45267 -13.18387 -12.78399 -12.62223 -12.41444 -12.24527 -12.14808 -11.94856 -11.82054 -11.75641 -11.53713 -11.47682 -11.05559 -10.94160 -10.81278 -10.68995 -10.59225 -10.49365 -10.40320 -10.36626 -10.22728 -9.95739 -9.51884 -8.86926 -8.47349 -8.06789 -7.96782 -6.42682 -3.83531 2.21282 2.59110 3.16938 3.25797 3.31677 3.32936 3.39815 3.88706 3.89697 3.96535 4.16022 4.28953 4.31843 4.39238 4.50552 4.69422 4.75716 4.95083 5.00311 5.04410 5.06928 5.15373 5.17015 5.24947 5.26152 5.26392 5.30027 5.33653 5.47058 5.50723 5.55816 5.58841 5.63412 5.69296 5.73479 5.79667 5.82583 5.91405 5.95891 5.97746 6.06354 6.12002 6.25489 6.39827 7.18102 7.26202 7.54181 7.63920 7.94036 8.05312 8.60221 9.16886 9.53444 10.04719 10.75004 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.041069 B = 0.001659 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.621890 B =16870.383845 C =17076.886036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.067 4.067 3 C 0.074 3.926 4 N -0.664 5.664 5 C 0.050 3.950 6 C 0.441 3.559 7 O -0.584 6.584 8 N -0.564 5.564 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.901 5.901 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C -0.128 4.128 18 C 0.103 3.897 19 N -0.613 5.613 20 C 0.556 3.444 21 O -0.536 6.536 22 C -0.138 4.138 23 H 0.123 0.877 24 C -0.099 4.099 25 C -0.203 4.203 26 C -0.113 4.113 27 C -0.129 4.129 28 C 0.116 3.884 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.348 0.652 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.068 0.932 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.446 -25.698 -10.300 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.069 4.069 3 C -0.056 4.056 4 N -0.297 5.297 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.468 6.468 8 N -0.200 5.200 9 C -0.430 4.430 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.166 4.166 18 C -0.020 4.020 19 N -0.347 5.347 20 C 0.345 3.655 21 O -0.413 6.413 22 C -0.159 4.159 23 H 0.141 0.859 24 C -0.137 4.137 25 C -0.203 4.203 26 C -0.150 4.150 27 C -0.166 4.166 28 C -0.007 4.007 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.168 0.832 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.125 0.875 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.115 0.885 49 H 0.086 0.914 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.432 -25.697 -10.696 27.838 hybrid contribution 1.111 0.824 0.708 1.553 sum 1.543 -24.874 -9.989 26.849 Atomic orbital electron populations 1.21626 0.92366 1.00825 1.03493 1.21776 0.97229 0.93996 0.93852 1.21860 0.96768 0.92428 0.94503 1.60034 1.63692 1.01909 1.04023 1.21672 0.97357 0.90411 0.98790 1.19805 0.85738 0.83339 0.88479 1.90517 1.42297 1.64709 1.49277 1.41867 1.47022 1.10481 1.20664 1.19703 1.30435 0.95205 0.97607 0.87918 1.25262 0.96869 0.96581 0.99222 1.69615 1.37041 1.11749 1.35874 0.85855 0.79220 0.78082 0.81112 1.20443 1.20926 1.19410 1.22792 1.02349 0.92742 0.98715 1.22065 1.01690 0.98504 0.79723 1.48375 1.73006 1.06175 1.07125 1.19322 0.75966 0.84453 0.85774 1.90703 1.50105 1.85970 1.14480 1.21931 1.04963 0.88424 1.00534 0.85897 1.22667 0.90397 0.99568 1.01032 1.21181 1.01072 0.98953 0.99112 1.22601 1.02287 1.00883 0.89199 1.22771 0.98231 0.93730 1.01862 1.22339 1.00991 0.79619 0.97751 0.90396 0.92618 0.93528 0.95222 0.90623 0.83202 0.93933 0.89574 0.77463 0.91877 0.88900 0.90515 0.91264 0.91280 0.88111 0.87512 0.88182 0.88510 0.88282 0.88492 0.91369 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.43 37.16 0.31 -1.06 16 2 C -0.07 -0.67 0.73 -152.24 -0.11 -0.78 16 3 C 0.07 0.85 4.72 -3.83 -0.02 0.83 16 4 N -0.66 -9.91 5.62 -115.06 -0.65 -10.55 16 5 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 6 C 0.44 10.18 7.82 -10.98 -0.09 10.09 16 7 O -0.58 -15.46 15.78 5.55 0.09 -15.38 16 8 N -0.56 -14.12 5.29 -10.96 -0.06 -14.17 16 9 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 10 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 13 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 C -0.13 -1.11 4.92 -24.90 -0.12 -1.24 16 18 C 0.10 0.80 5.97 -3.06 -0.02 0.79 16 19 N -0.61 -6.18 3.31 -170.38 -0.56 -6.74 16 20 C 0.56 6.42 7.63 -10.99 -0.08 6.34 16 21 O -0.54 -8.06 16.50 5.55 0.09 -7.97 16 22 C -0.14 -1.20 5.53 -91.77 -0.51 -1.70 16 23 H 0.12 0.86 7.68 -51.93 -0.40 0.46 16 24 C -0.10 -0.73 10.24 -26.69 -0.27 -1.00 16 25 C -0.20 -1.74 5.06 -154.48 -0.78 -2.52 16 26 C -0.11 -0.95 10.16 -26.73 -0.27 -1.22 16 27 C -0.13 -0.86 10.53 -26.73 -0.28 -1.14 16 28 C 0.12 1.19 5.85 -2.41 -0.01 1.18 16 29 H 0.08 0.98 7.84 -51.93 -0.41 0.57 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.48 7.89 -51.93 -0.41 0.07 16 32 H 0.03 0.32 8.10 -51.93 -0.42 -0.10 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.35 5.31 7.42 -39.29 -0.29 5.02 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.09 0.84 8.00 -51.92 -0.42 0.42 16 40 H 0.08 0.65 8.04 -51.94 -0.42 0.23 16 41 H 0.07 0.48 7.98 -51.93 -0.41 0.07 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.68 8.01 -51.93 -0.42 0.27 16 50 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 LS Contribution 411.19 15.07 6.20 6.20 Total: -1.00 -32.83 411.19 -10.21 -43.04 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -8.49 Total: 11.91 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.53 Total: 1.44 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.54 Total: -55.12 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.18 Total: -23.35 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.83 -10.21 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671784564.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.451 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds