Wall clock time and date at job start Tue Mar 31 2020 19:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50706 * 110.21484 * 2 1 4 4 O 1.21272 * 120.00096 * 94.52438 * 3 2 1 5 5 N 1.34774 * 119.99801 * 274.52257 * 3 2 1 6 6 C 1.46506 * 120.00121 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47179 * 180.02562 * 6 5 3 8 8 H 1.09000 * 109.43330 * 59.93729 * 7 6 5 9 9 C 1.53147 * 109.43285 * 179.84863 * 7 6 5 10 10 C 1.53699 * 108.87288 * 66.17213 * 9 7 6 11 11 H 1.09004 * 112.58189 * 187.93035 * 10 9 7 12 12 C 1.54217 * 107.73052 * 312.05875 * 10 9 7 13 13 C 1.54315 * 104.78940 * 88.97745 * 12 10 9 14 14 C 1.54608 * 104.74750 * 359.82932 * 13 12 10 15 15 H 1.09000 * 112.18905 * 146.80139 * 14 13 12 16 16 C 1.53697 * 108.37139 * 271.10738 * 14 13 12 17 17 N 1.48290 * 107.27847 * 64.01140 * 10 9 7 18 18 C 1.36941 * 128.21340 * 107.43166 * 17 10 9 19 19 H 1.07998 * 119.99617 * 154.71890 * 18 17 10 20 20 C 1.38806 * 120.00042 * 334.72231 * 18 17 10 21 21 N 1.31627 * 120.00053 * 354.98821 * 20 18 17 22 22 Si 1.86797 * 120.00127 * 174.98377 * 20 18 17 23 23 H 1.48505 * 109.47173 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.47313 * 299.99809 * 22 20 18 25 25 H 1.48498 * 109.47073 * 60.00234 * 22 20 18 26 26 C 1.54484 * 110.32307 * 121.97625 * 2 1 3 27 27 C 1.54620 * 101.76752 * 144.45546 * 26 2 1 28 28 C 1.51284 * 104.19842 * 335.20818 * 27 26 2 29 29 O 1.21275 * 124.94320 * 196.23380 * 28 27 26 30 30 N 1.34418 * 110.11287 * 16.24414 * 28 27 26 31 31 H 1.09001 * 109.47177 * 59.30464 * 1 2 3 32 32 H 1.09008 * 109.46598 * 179.29743 * 1 2 3 33 33 H 1.08996 * 109.47567 * 299.29893 * 1 2 3 34 34 H 0.97001 * 120.00343 * 0.02562 * 5 3 2 35 35 H 1.08994 * 109.47081 * 59.99533 * 6 5 3 36 36 H 1.09004 * 109.46498 * 299.99989 * 6 5 3 37 37 H 1.08997 * 109.57120 * 306.35621 * 9 7 6 38 38 H 1.08992 * 109.57006 * 185.98959 * 9 7 6 39 39 H 1.09003 * 110.51048 * 330.07508 * 12 10 9 40 40 H 1.09000 * 110.22583 * 207.73490 * 12 10 9 41 41 H 1.09001 * 110.38452 * 241.01238 * 13 12 10 42 42 H 1.09001 * 110.38079 * 118.64765 * 13 12 10 43 43 H 1.08999 * 109.57312 * 167.84787 * 16 14 13 44 44 H 1.09009 * 109.56699 * 288.20288 * 16 14 13 45 45 H 0.97001 * 120.00413 * 179.97438 * 21 20 18 46 46 H 1.09001 * 110.96486 * 262.58280 * 26 2 1 47 47 H 1.09000 * 110.96523 * 26.33855 * 26 2 1 48 48 H 1.08991 * 110.48629 * 216.52351 * 27 26 2 49 49 H 1.09004 * 110.59948 * 93.93694 * 27 26 2 50 50 H 0.97000 * 124.34553 * 180.38371 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.3380 1.9546 1.0470 5 7 2.1972 2.0784 -1.1636 6 6 2.7039 3.4530 -1.1637 7 6 2.7727 3.9711 -2.6017 8 1 1.7762 3.9498 -3.0428 9 6 3.2989 5.4093 -2.6005 10 6 4.7585 5.4042 -2.1190 11 1 5.1512 6.4090 -1.9627 12 6 4.8276 4.5482 -0.8381 13 6 5.0871 3.1115 -1.3380 14 6 5.1461 3.2352 -2.8780 15 1 5.8449 2.5260 -3.3215 16 6 3.7223 3.0678 -3.4323 17 7 5.5486 4.6425 -3.1162 18 6 6.4425 5.1238 -4.0353 19 1 7.2293 4.4852 -4.4090 20 6 6.3374 6.4322 -4.4864 21 7 5.3224 7.1796 -4.1073 22 14 7.6365 7.1325 -5.6316 23 1 7.2965 8.5393 -5.9645 24 1 8.9615 7.0892 -4.9626 25 1 7.6844 6.3262 -6.8777 26 6 2.0665 -0.7672 1.2289 27 6 3.3310 -1.4437 0.6508 28 6 3.0537 -1.5422 -0.8331 29 8 3.6597 -2.2521 -1.6074 30 7 2.0379 -0.7283 -1.1686 31 1 -0.3633 0.5246 -0.8837 32 1 -0.3633 -1.0277 -0.0126 33 1 -0.3634 0.5029 0.8961 34 1 1.9671 1.6463 -2.0010 35 1 3.7001 3.4730 -0.7218 36 1 2.0352 4.0867 -0.5811 37 1 2.6948 6.0186 -1.9282 38 1 3.2489 5.8172 -3.6100 39 1 3.8836 4.5965 -0.2951 40 1 5.6485 4.8837 -0.2044 41 1 4.2709 2.4529 -1.0410 42 1 6.0358 2.7402 -0.9503 43 1 3.7020 3.3623 -4.4815 44 1 3.4138 2.0265 -3.3376 45 1 5.2492 8.0941 -4.4222 46 1 2.3252 -0.0805 2.0349 47 1 1.3465 -1.5117 1.5687 48 1 3.4630 -2.4364 1.0810 49 1 4.2125 -0.8292 0.8341 50 1 1.6861 -0.6340 -2.0676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672356425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:31 Heat of formation + Delta-G solvation = 45.991276 kcal Electronic energy + Delta-G solvation = -31672.064484 eV Core-core repulsion = 27703.438176 eV Total energy + Delta-G solvation = -3968.626308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.60415 -40.73995 -38.79188 -36.59090 -34.86595 -32.87205 -31.64696 -31.34759 -31.15443 -30.65333 -29.63865 -26.82538 -25.23731 -23.90264 -23.31468 -22.58566 -21.00842 -20.65792 -20.20365 -19.38306 -18.91962 -18.17928 -17.03024 -16.98843 -16.14638 -15.62614 -15.54461 -14.98978 -14.57979 -14.45967 -14.15044 -13.99850 -13.71298 -13.54588 -13.03318 -12.88529 -12.85664 -12.71797 -12.65615 -12.54779 -12.02396 -11.71356 -11.56514 -11.50537 -11.38844 -11.36185 -11.21493 -10.86725 -10.79856 -10.57290 -10.50465 -10.15082 -10.08884 -9.80586 -9.73034 -9.46621 -9.39433 -9.28093 -9.13345 -8.59074 -8.21731 -6.70131 -5.81479 -3.19914 2.34406 2.43674 3.02502 3.17852 3.37611 3.42657 3.43460 3.92777 4.17729 4.36442 4.45458 4.63112 4.73384 4.97803 5.15436 5.19671 5.24778 5.28888 5.38924 5.44093 5.46427 5.56976 5.58402 5.62914 5.71323 5.74198 5.79522 5.88366 6.01902 6.08262 6.14071 6.27566 6.37845 6.39175 6.41452 6.54023 6.61494 6.63819 6.67827 6.72865 6.85542 6.94278 7.05755 7.11537 7.50381 7.52649 7.63707 7.75405 7.97189 8.17776 8.24894 9.12058 9.73111 10.57636 11.32407 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020919 B = 0.003344 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.144799 B = 8372.129287 C = 8904.022795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.140 3.860 3 C 0.504 3.496 4 O -0.535 6.535 5 N -0.710 5.710 6 C 0.000 4.000 7 C -0.086 4.086 8 H 0.049 0.951 9 C -0.109 4.109 10 C 0.187 3.813 11 H 0.094 0.906 12 C -0.173 4.173 13 C -0.161 4.161 14 C 0.149 3.851 15 H 0.062 0.938 16 C -0.121 4.121 17 N -0.581 5.581 18 C -0.230 4.230 19 H 0.069 0.931 20 C 0.004 3.996 21 N -0.907 5.907 22 Si 0.908 3.092 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.284 1.284 26 C -0.115 4.115 27 C -0.160 4.160 28 C 0.524 3.476 29 O -0.527 6.527 30 N -0.723 5.723 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.392 0.608 35 H 0.196 0.804 36 H 0.051 0.949 37 H 0.038 0.962 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.254 0.746 46 H 0.110 0.890 47 H 0.091 0.909 48 H 0.105 0.895 49 H 0.108 0.892 50 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.587 -13.591 9.934 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.049 3.951 3 C 0.287 3.713 4 O -0.412 6.412 5 N -0.360 5.360 6 C -0.118 4.118 7 C -0.105 4.105 8 H 0.068 0.932 9 C -0.148 4.148 10 C 0.080 3.920 11 H 0.112 0.888 12 C -0.211 4.211 13 C -0.199 4.199 14 C 0.042 3.958 15 H 0.081 0.919 16 C -0.160 4.160 17 N -0.302 5.302 18 C -0.358 4.358 19 H 0.087 0.913 20 C -0.194 4.194 21 N -0.551 5.551 22 Si 0.738 3.262 23 H -0.216 1.216 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.153 4.153 27 C -0.200 4.200 28 C 0.311 3.689 29 O -0.402 6.402 30 N -0.381 5.381 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.226 0.774 35 H 0.211 0.789 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.129 0.871 47 H 0.109 0.891 48 H 0.124 0.876 49 H 0.127 0.873 50 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -10.915 -13.319 10.217 20.023 hybrid contribution -0.006 0.407 -1.695 1.743 sum -10.921 -12.912 8.522 18.937 Atomic orbital electron populations 1.22043 0.91069 1.03742 1.03940 1.21275 0.96307 0.89843 0.87656 1.20565 0.78651 0.87656 0.84396 1.90704 1.50260 1.68967 1.31225 1.46372 1.65107 1.16365 1.08192 1.25333 1.06849 0.79666 0.99934 1.21631 0.97906 0.97923 0.93036 0.93232 1.22034 0.97687 0.91862 1.03247 1.21186 0.89914 0.95900 0.84998 0.88764 1.23469 1.00869 0.96082 1.00676 1.23385 1.00870 0.97035 0.98618 1.21518 0.92828 0.89429 0.92069 0.91944 1.22502 0.97503 0.96099 0.99940 1.45042 1.47698 0.99919 1.37568 1.18866 1.04435 0.96438 1.16081 0.91318 1.25017 0.97432 0.98031 0.98960 1.69878 1.29528 1.08310 1.47418 0.86291 0.81100 0.77976 0.80872 1.21637 1.21120 1.21064 1.22658 0.96578 0.99640 0.96395 1.22415 1.00334 1.04185 0.93031 1.20901 0.78611 0.78206 0.91174 1.90781 1.51375 1.40650 1.57439 1.46342 1.36768 1.44162 1.10864 0.91457 0.90533 0.90008 0.77394 0.78895 0.93053 0.94290 0.89496 0.89397 0.92696 0.89031 0.93045 0.91655 0.94399 0.93643 0.87147 0.89091 0.87625 0.87342 0.75026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.79 37.15 0.33 -0.59 16 2 C 0.14 1.18 1.13 -132.05 -0.15 1.03 16 3 C 0.50 6.06 6.50 -10.98 -0.07 5.99 16 4 O -0.54 -8.12 15.69 5.56 0.09 -8.03 16 5 N -0.71 -8.71 4.30 -60.29 -0.26 -8.97 16 6 C 0.00 0.01 2.68 -4.04 -0.01 0.00 16 7 C -0.09 -1.44 2.80 -89.39 -0.25 -1.69 16 8 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 9 C -0.11 -2.20 5.19 -26.29 -0.14 -2.33 16 10 C 0.19 4.14 3.07 -65.94 -0.20 3.94 16 11 H 0.09 2.40 6.94 -51.93 -0.36 2.04 16 12 C -0.17 -3.22 5.70 -25.41 -0.14 -3.36 16 13 C -0.16 -2.87 5.72 -25.20 -0.14 -3.02 16 14 C 0.15 3.00 4.28 -65.73 -0.28 2.72 16 15 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 16 C -0.12 -2.14 5.42 -25.22 -0.14 -2.27 16 17 N -0.58 -13.96 2.78 -153.00 -0.43 -14.38 16 18 C -0.23 -6.16 10.34 -15.06 -0.16 -6.32 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C 0.00 0.10 5.43 -17.43 -0.09 0.01 16 21 N -0.91 -24.98 10.33 55.49 0.57 -24.41 16 22 Si 0.91 21.46 29.56 -169.99 -5.02 16.44 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.11 -0.85 6.15 -25.10 -0.15 -1.01 16 27 C -0.16 -1.38 6.85 -26.74 -0.18 -1.56 16 28 C 0.52 5.97 8.43 -10.86 -0.09 5.88 16 29 O -0.53 -8.23 18.03 5.56 0.10 -8.13 16 30 N -0.72 -6.38 4.91 -47.68 -0.23 -6.61 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.39 4.18 6.63 -40.82 -0.27 3.91 16 35 H 0.20 3.18 1.12 -165.82 -0.19 2.99 16 36 H 0.05 0.81 8.00 -51.93 -0.42 0.39 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 2.07 7.36 -51.93 -0.38 1.69 16 39 H 0.09 1.51 4.83 -51.93 -0.25 1.26 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.09 1.50 3.96 -51.93 -0.21 1.29 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.04 0.57 6.76 -51.92 -0.35 0.22 16 45 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.11 0.93 6.91 -51.93 -0.36 0.57 16 47 H 0.09 0.47 7.92 -51.93 -0.41 0.06 16 48 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.41 3.11 8.76 -40.82 -0.36 2.75 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -31.53 370.29 -9.23 -40.76 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -7.75 Total: 10.34 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -1.88 Total: -2.58 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.35 Total: -54.37 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.19 Total: -16.16 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.53 -9.23 -40.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672356425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.746 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds