Wall clock time and date at job start Tue Mar 31 2020 19:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50706 * 110.21484 * 2 1 4 4 O 1.21272 * 120.00096 * 94.52438 * 3 2 1 5 5 N 1.34774 * 119.99801 * 274.52257 * 3 2 1 6 6 C 1.46506 * 120.00121 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47179 * 180.02562 * 6 5 3 8 8 H 1.09000 * 109.43330 * 59.93729 * 7 6 5 9 9 C 1.53147 * 109.43285 * 179.84863 * 7 6 5 10 10 C 1.53699 * 108.87288 * 66.17213 * 9 7 6 11 11 H 1.09004 * 112.58189 * 187.93035 * 10 9 7 12 12 C 1.54217 * 107.73052 * 312.05875 * 10 9 7 13 13 C 1.54315 * 104.78940 * 88.97745 * 12 10 9 14 14 C 1.54608 * 104.74750 * 359.82932 * 13 12 10 15 15 H 1.09000 * 112.18905 * 146.80139 * 14 13 12 16 16 C 1.53697 * 108.37139 * 271.10738 * 14 13 12 17 17 N 1.48290 * 107.27847 * 64.01140 * 10 9 7 18 18 C 1.36941 * 128.21340 * 107.43166 * 17 10 9 19 19 H 1.07998 * 119.99617 * 154.71890 * 18 17 10 20 20 C 1.38806 * 120.00042 * 334.72231 * 18 17 10 21 21 N 1.31627 * 120.00053 * 354.98821 * 20 18 17 22 22 Si 1.86797 * 120.00127 * 174.98377 * 20 18 17 23 23 H 1.48505 * 109.47173 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.47313 * 299.99809 * 22 20 18 25 25 H 1.48498 * 109.47073 * 60.00234 * 22 20 18 26 26 C 1.54484 * 110.32307 * 121.97625 * 2 1 3 27 27 C 1.54620 * 101.76752 * 144.45546 * 26 2 1 28 28 C 1.51284 * 104.19842 * 335.20818 * 27 26 2 29 29 O 1.21275 * 124.94320 * 196.23380 * 28 27 26 30 30 N 1.34418 * 110.11287 * 16.24414 * 28 27 26 31 31 H 1.09001 * 109.47177 * 59.30464 * 1 2 3 32 32 H 1.09008 * 109.46598 * 179.29743 * 1 2 3 33 33 H 1.08996 * 109.47567 * 299.29893 * 1 2 3 34 34 H 0.97001 * 120.00343 * 0.02562 * 5 3 2 35 35 H 1.08994 * 109.47081 * 59.99533 * 6 5 3 36 36 H 1.09004 * 109.46498 * 299.99989 * 6 5 3 37 37 H 1.08997 * 109.57120 * 306.35621 * 9 7 6 38 38 H 1.08992 * 109.57006 * 185.98959 * 9 7 6 39 39 H 1.09003 * 110.51048 * 330.07508 * 12 10 9 40 40 H 1.09000 * 110.22583 * 207.73490 * 12 10 9 41 41 H 1.09001 * 110.38452 * 241.01238 * 13 12 10 42 42 H 1.09001 * 110.38079 * 118.64765 * 13 12 10 43 43 H 1.08999 * 109.57312 * 167.84787 * 16 14 13 44 44 H 1.09009 * 109.56699 * 288.20288 * 16 14 13 45 45 H 0.97001 * 120.00413 * 179.97438 * 21 20 18 46 46 H 1.09001 * 110.96486 * 262.58280 * 26 2 1 47 47 H 1.09000 * 110.96523 * 26.33855 * 26 2 1 48 48 H 1.08991 * 110.48629 * 216.52351 * 27 26 2 49 49 H 1.09004 * 110.59948 * 93.93694 * 27 26 2 50 50 H 0.97000 * 124.34553 * 180.38371 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.3380 1.9546 1.0470 5 7 2.1972 2.0784 -1.1636 6 6 2.7039 3.4530 -1.1637 7 6 2.7727 3.9711 -2.6017 8 1 1.7762 3.9498 -3.0428 9 6 3.2989 5.4093 -2.6005 10 6 4.7585 5.4042 -2.1190 11 1 5.1512 6.4090 -1.9627 12 6 4.8276 4.5482 -0.8381 13 6 5.0871 3.1115 -1.3380 14 6 5.1461 3.2352 -2.8780 15 1 5.8449 2.5260 -3.3215 16 6 3.7223 3.0678 -3.4323 17 7 5.5486 4.6425 -3.1162 18 6 6.4425 5.1238 -4.0353 19 1 7.2293 4.4852 -4.4090 20 6 6.3374 6.4322 -4.4864 21 7 5.3224 7.1796 -4.1073 22 14 7.6365 7.1325 -5.6316 23 1 7.2965 8.5393 -5.9645 24 1 8.9615 7.0892 -4.9626 25 1 7.6844 6.3262 -6.8777 26 6 2.0665 -0.7672 1.2289 27 6 3.3310 -1.4437 0.6508 28 6 3.0537 -1.5422 -0.8331 29 8 3.6597 -2.2521 -1.6074 30 7 2.0379 -0.7283 -1.1686 31 1 -0.3633 0.5246 -0.8837 32 1 -0.3633 -1.0277 -0.0126 33 1 -0.3634 0.5029 0.8961 34 1 1.9671 1.6463 -2.0010 35 1 3.7001 3.4730 -0.7218 36 1 2.0352 4.0867 -0.5811 37 1 2.6948 6.0186 -1.9282 38 1 3.2489 5.8172 -3.6100 39 1 3.8836 4.5965 -0.2951 40 1 5.6485 4.8837 -0.2044 41 1 4.2709 2.4529 -1.0410 42 1 6.0358 2.7402 -0.9503 43 1 3.7020 3.3623 -4.4815 44 1 3.4138 2.0265 -3.3376 45 1 5.2492 8.0941 -4.4222 46 1 2.3252 -0.0805 2.0349 47 1 1.3465 -1.5117 1.5687 48 1 3.4630 -2.4364 1.0810 49 1 4.2125 -0.8292 0.8341 50 1 1.6861 -0.6340 -2.0676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672356425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:30 Heat of formation + Delta-G solvation = 24.530416 kcal Electronic energy + Delta-G solvation = -31672.995096 eV Core-core repulsion = 27703.438176 eV Total energy + Delta-G solvation = -3969.556921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.82698 -41.81112 -39.83864 -37.51340 -36.23805 -34.56265 -32.97486 -32.38747 -32.18190 -31.88911 -31.26598 -28.36311 -26.04492 -25.38681 -24.86079 -23.66307 -22.17862 -21.71054 -21.34908 -20.82338 -20.42644 -19.24630 -18.63621 -17.82106 -17.57720 -16.88470 -16.52006 -16.42527 -16.04505 -15.55526 -15.30704 -14.89709 -14.78322 -14.54120 -14.44999 -14.34139 -14.17309 -13.69853 -13.53010 -13.40298 -13.33137 -13.19581 -13.15532 -13.05195 -12.83359 -12.69443 -12.52615 -12.31662 -12.08176 -11.99773 -11.96484 -11.59670 -11.36711 -11.29630 -11.02571 -10.98723 -10.88728 -10.80168 -10.50942 -10.07787 -9.49744 -8.62052 -7.86673 -5.25259 1.46011 1.46805 1.47086 1.53237 1.54884 2.18200 2.31353 2.49536 3.25136 3.31918 3.51619 3.58301 3.69003 3.86566 3.89645 3.95272 4.05100 4.12960 4.21445 4.26757 4.36686 4.39697 4.53487 4.57045 4.68796 4.69941 4.79071 4.80932 4.86111 4.88550 4.98993 5.01714 5.04637 5.06994 5.12808 5.16684 5.20887 5.27494 5.36556 5.48386 5.52628 5.53257 5.59696 5.69596 5.76236 5.92678 5.93919 6.30282 6.55772 7.10818 7.16479 7.22306 7.74804 8.60883 9.25431 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020919 B = 0.003344 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.144799 B = 8372.129287 C = 8904.022795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.146 3.854 3 C 0.503 3.497 4 O -0.564 6.564 5 N -0.707 5.707 6 C 0.013 3.987 7 C -0.074 4.074 8 H 0.069 0.931 9 C -0.101 4.101 10 C 0.181 3.819 11 H 0.052 0.948 12 C -0.162 4.162 13 C -0.147 4.147 14 C 0.140 3.860 15 H 0.054 0.946 16 C -0.112 4.112 17 N -0.604 5.604 18 C -0.245 4.245 19 H 0.063 0.937 20 C -0.044 4.044 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.293 1.293 24 H -0.283 1.283 25 H -0.280 1.280 26 C -0.109 4.109 27 C -0.158 4.158 28 C 0.519 3.481 29 O -0.576 6.576 30 N -0.711 5.711 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.402 0.598 35 H 0.182 0.818 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.110 0.890 40 H 0.050 0.950 41 H 0.114 0.886 42 H 0.050 0.950 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.247 0.753 46 H 0.103 0.897 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.101 0.899 50 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.473 -15.636 11.173 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.056 3.944 3 C 0.288 3.712 4 O -0.442 6.442 5 N -0.358 5.358 6 C -0.107 4.107 7 C -0.093 4.093 8 H 0.088 0.912 9 C -0.141 4.141 10 C 0.075 3.925 11 H 0.070 0.930 12 C -0.200 4.200 13 C -0.185 4.185 14 C 0.033 3.967 15 H 0.072 0.928 16 C -0.151 4.151 17 N -0.326 5.326 18 C -0.374 4.374 19 H 0.081 0.919 20 C -0.240 4.240 21 N -0.571 5.571 22 Si 0.795 3.205 23 H -0.219 1.219 24 H -0.209 1.209 25 H -0.206 1.206 26 C -0.146 4.146 27 C -0.198 4.198 28 C 0.307 3.693 29 O -0.456 6.456 30 N -0.368 5.368 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.238 0.762 35 H 0.197 0.803 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.128 0.872 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.056 0.944 46 H 0.122 0.878 47 H 0.140 0.860 48 H 0.142 0.858 49 H 0.120 0.880 50 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -12.836 -15.383 11.461 23.082 hybrid contribution 0.583 1.047 -2.054 2.378 sum -12.253 -14.336 9.407 21.075 Atomic orbital electron populations 1.22077 0.88658 1.05282 1.04449 1.21328 0.97862 0.87358 0.87857 1.21197 0.77651 0.88822 0.83521 1.90703 1.51313 1.69985 1.32212 1.46225 1.65175 1.15293 1.09125 1.24839 1.06306 0.81394 0.98115 1.21471 0.98249 0.95280 0.94324 0.91221 1.21830 0.96920 0.94492 1.00885 1.21128 0.90552 0.94356 0.86473 0.93011 1.23415 1.01980 0.95723 0.98883 1.23314 1.01782 0.96829 0.96592 1.21736 0.93999 0.87212 0.93748 0.92781 1.22363 0.96195 0.98257 0.98310 1.45227 1.47824 1.01843 1.37685 1.19110 1.05054 0.96753 1.16487 0.91896 1.25669 0.99336 0.98429 1.00592 1.70050 1.30816 1.07981 1.48286 0.85363 0.78954 0.76941 0.79217 1.21922 1.20888 1.20622 1.22729 0.96546 0.99880 0.95484 1.22458 1.00732 1.05346 0.91281 1.21352 0.78353 0.77649 0.91990 1.90759 1.53109 1.42821 1.58873 1.46317 1.35886 1.43057 1.11515 0.90896 0.88504 0.89641 0.76166 0.80298 0.92847 0.93107 0.93591 0.87219 0.93117 0.86816 0.93091 0.94309 0.90932 0.94365 0.87848 0.86008 0.85821 0.88035 0.74249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.79 71.98 0.63 -0.53 16 2 C 0.15 1.93 1.13 3.31 0.00 1.93 16 3 C 0.50 10.47 6.50 87.66 0.57 11.04 16 4 O -0.56 -15.51 15.69 -3.01 -0.05 -15.56 16 5 N -0.71 -14.99 4.30 -463.05 -1.99 -16.98 16 6 C 0.01 0.36 2.68 86.38 0.23 0.59 16 7 C -0.07 -2.37 2.80 -10.00 -0.03 -2.40 16 8 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 9 C -0.10 -4.14 5.19 30.88 0.16 -3.98 16 10 C 0.18 8.25 3.07 45.29 0.14 8.39 16 11 H 0.05 2.77 6.94 -2.39 -0.02 2.75 16 12 C -0.16 -5.95 5.70 31.45 0.18 -5.77 16 13 C -0.15 -5.08 5.72 31.59 0.18 -4.90 16 14 C 0.14 5.60 4.28 45.43 0.19 5.79 16 15 H 0.05 2.22 8.14 -2.39 -0.02 2.21 16 16 C -0.11 -3.83 5.42 31.57 0.17 -3.66 16 17 N -0.60 -29.79 2.78 -637.96 -1.77 -31.56 16 18 C -0.24 -13.56 10.34 84.03 0.87 -12.69 16 19 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 20 C -0.04 -2.47 5.43 84.86 0.46 -2.01 16 21 N -0.93 -53.08 10.33 21.65 0.22 -52.85 16 22 Si 0.97 45.32 29.56 68.60 2.03 47.35 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 C -0.11 -1.22 6.15 31.65 0.19 -1.02 16 27 C -0.16 -2.31 6.85 30.59 0.21 -2.10 16 28 C 0.52 10.67 8.43 87.90 0.74 11.41 16 29 O -0.58 -17.40 18.03 -3.02 -0.05 -17.45 16 30 N -0.71 -10.31 4.91 -423.35 -2.08 -12.39 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.40 7.04 6.63 -92.71 -0.61 6.42 16 35 H 0.18 5.49 1.12 -109.37 -0.12 5.37 16 36 H 0.05 1.51 8.00 -2.38 -0.02 1.49 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.05 2.25 7.36 -2.39 -0.02 2.24 16 39 H 0.11 3.58 4.83 -2.39 -0.01 3.57 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.11 3.43 3.96 -2.39 -0.01 3.42 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.98 6.76 -2.38 -0.02 1.96 16 45 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 46 H 0.10 1.41 6.91 -2.39 -0.02 1.40 16 47 H 0.12 0.66 7.92 -2.39 -0.02 0.64 16 48 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.42 4.96 8.76 -92.71 -0.81 4.15 16 Total: -1.00 -71.72 370.29 0.65 -71.07 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.56 Total: 28.28 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 4.91 Total: 0.10 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -5.62 Total: -113.79 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.10 Total: -33.01 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -71.72 0.65 -71.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672356425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.600 kcal (2) G-P(sol) polarization free energy of solvation -71.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds