Wall clock time and date at job start Tue Mar 31 2020 18:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35423 * 117.00023 * 2 1 4 4 N 1.32232 * 119.80037 * 0.02562 * 3 2 1 5 5 C 1.31880 * 121.80018 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.40737 * 179.97438 * 5 4 3 7 7 C 1.38362 * 121.18702 * 0.27710 * 5 4 3 8 8 C 1.38334 * 119.45150 * 359.45138 * 7 5 4 9 9 C 1.39984 * 118.35551 * 0.53200 * 8 7 5 10 10 C 1.47525 * 120.60203 * 179.71207 * 9 8 7 11 11 O 1.21585 * 119.99935 * 150.89477 * 10 9 8 12 12 N 1.34773 * 119.99806 * 330.89429 * 10 9 8 13 13 C 1.46506 * 120.00107 * 7.20130 * 12 10 9 14 14 C 1.53001 * 109.47160 * 97.46627 * 13 12 10 15 15 N 1.46499 * 109.46874 * 180.02562 * 14 13 12 16 16 C 1.46508 * 119.99443 * 269.99510 * 15 14 13 17 17 C 1.36930 * 120.00499 * 90.00109 * 15 14 13 18 18 H 1.08008 * 119.99668 * 18.51788 * 17 15 14 19 19 C 1.38813 * 120.00368 * 198.51255 * 17 15 14 20 20 N 1.31619 * 119.99740 * 14.08910 * 19 17 15 21 21 Si 1.86798 * 120.00234 * 194.08722 * 19 17 15 22 22 H 1.48496 * 109.47129 * 90.00083 * 21 19 17 23 23 H 1.48502 * 109.47120 * 210.00463 * 21 19 17 24 24 H 1.48503 * 109.46780 * 330.00070 * 21 19 17 25 25 C 1.46500 * 120.00313 * 187.20257 * 12 10 9 26 26 C 1.52994 * 109.47304 * 114.17335 * 25 12 10 27 27 C 1.52997 * 109.47290 * 234.17652 * 25 12 10 28 28 H 1.09004 * 109.46768 * 299.99527 * 1 2 3 29 29 H 1.08994 * 109.47485 * 59.99862 * 1 2 3 30 30 H 1.09005 * 109.47500 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47382 * 90.00261 * 6 5 4 32 32 H 1.09002 * 109.47678 * 330.00196 * 6 5 4 33 33 H 1.08999 * 109.47242 * 210.00210 * 6 5 4 34 34 H 1.07995 * 120.27270 * 179.72220 * 7 5 4 35 35 H 1.08005 * 120.82061 * 180.24230 * 8 7 5 36 36 H 1.08997 * 109.47007 * 217.46656 * 13 12 10 37 37 H 1.08999 * 109.46787 * 337.46638 * 13 12 10 38 38 H 1.08997 * 109.47184 * 299.99920 * 14 13 12 39 39 H 1.08994 * 109.46798 * 60.00307 * 14 13 12 40 40 H 1.08998 * 109.46753 * 93.88098 * 16 15 14 41 41 H 1.09006 * 109.46911 * 213.87099 * 16 15 14 42 42 H 1.08998 * 109.47316 * 333.87572 * 16 15 14 43 43 H 0.97001 * 119.99894 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.46650 * 354.17164 * 25 12 10 45 45 H 1.09006 * 109.47407 * 60.00293 * 26 25 12 46 46 H 1.08999 * 109.47229 * 180.02562 * 26 25 12 47 47 H 1.09001 * 109.47389 * 300.00218 * 26 25 12 48 48 H 1.09006 * 109.47358 * 59.99241 * 27 25 12 49 49 H 1.09000 * 109.47617 * 179.97438 * 27 25 12 50 50 H 1.09002 * 109.47280 * 299.99993 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3131 0.0005 5 6 1.8771 3.5083 0.0010 6 6 1.0001 4.7338 0.0010 7 6 3.2527 3.6574 -0.0047 8 6 4.0587 2.5332 0.0005 9 6 3.4450 1.2751 0.0000 10 6 4.2570 0.0434 -0.0010 11 8 3.8236 -0.9708 0.5107 12 7 5.4791 0.0424 -0.5692 13 6 6.0670 1.2974 -1.0444 14 6 7.0213 1.8478 0.0173 15 7 7.6086 3.1030 -0.4577 16 6 8.8595 3.0840 -1.2202 17 6 6.9887 4.2940 -0.1890 18 1 6.2561 4.3550 0.6023 19 6 7.3018 5.4230 -0.9334 20 7 7.9716 5.3034 -2.0601 21 14 6.7725 7.1120 -0.3363 22 1 7.8364 7.6887 0.5242 23 1 6.5441 8.0007 -1.5039 24 1 5.5159 6.9891 0.4455 25 6 6.2197 -1.2135 -0.7116 26 6 6.3746 -1.5487 -2.1964 27 6 7.6032 -1.0648 -0.0754 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.7882 5.0290 1.0287 32 1 0.0650 4.5115 -0.5132 33 1 1.5125 5.5473 -0.5124 34 1 3.6934 4.6434 -0.0087 35 1 5.1350 2.6240 0.0002 36 1 6.6170 1.1143 -1.9674 37 1 5.2744 2.0220 -1.2313 38 1 6.4712 2.0309 0.9404 39 1 7.8137 1.1232 0.2042 40 1 8.6347 3.0679 -2.2866 41 1 9.4419 3.9749 -0.9851 42 1 9.4325 2.1951 -0.9561 43 1 8.1901 6.0923 -2.5805 44 1 5.6748 -2.0151 -0.2130 45 1 6.9195 -0.7470 -2.6950 46 1 6.9252 -2.4834 -2.3023 47 1 5.3890 -1.6547 -2.6497 48 1 7.4929 -0.8259 0.9824 49 1 8.1541 -1.9993 -0.1810 50 1 8.1481 -0.2631 -0.5739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677215596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:55 Heat of formation + Delta-G solvation = 24.648165 kcal Electronic energy + Delta-G solvation = -31269.374924 eV Core-core repulsion = 27299.823110 eV Total energy + Delta-G solvation = -3969.551815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.96921 -39.37226 -37.91432 -36.72708 -35.35896 -33.68515 -31.84686 -31.46838 -31.07425 -28.55268 -28.12700 -27.06115 -26.74310 -26.00775 -23.70199 -23.30850 -22.55234 -21.32685 -20.63441 -19.13008 -17.94987 -17.15092 -16.97978 -16.58853 -15.97817 -15.71883 -15.22463 -14.69798 -14.57497 -14.23699 -14.09566 -13.97249 -13.83708 -13.50498 -13.38352 -12.96723 -12.82618 -12.74385 -12.51614 -12.32420 -12.18394 -12.09764 -11.87901 -11.67171 -11.61758 -11.27858 -11.11049 -10.97489 -10.95547 -10.85865 -10.65695 -10.47402 -10.31054 -10.06752 -9.91224 -9.78019 -9.46613 -9.06895 -8.72251 -8.41754 -8.18223 -6.93681 -5.86725 -3.30396 0.94059 1.52322 3.06951 3.18916 3.27436 3.30068 3.36321 3.37908 3.97532 4.23535 4.37992 4.79029 4.96121 5.11851 5.17514 5.23391 5.29739 5.31380 5.34228 5.35718 5.43191 5.46245 5.54694 5.59500 5.61779 5.66923 5.71351 5.72842 5.79207 5.89682 5.97839 6.01235 6.05849 6.13454 6.21884 6.27415 6.34973 6.40505 6.45624 6.63407 6.67010 6.76951 6.96965 7.30391 7.36979 7.57639 7.69039 7.71929 7.96390 8.22887 8.53683 9.08207 9.71695 10.18977 11.18039 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008870 B = 0.005753 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.820933 B = 4865.494390 C = 7621.448504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.282 6.282 3 C 0.366 3.634 4 N -0.552 5.552 5 C 0.181 3.819 6 C -0.106 4.106 7 C -0.208 4.208 8 C -0.028 4.028 9 C -0.219 4.219 10 C 0.571 3.429 11 O -0.537 6.537 12 N -0.598 5.598 13 C 0.051 3.949 14 C 0.118 3.882 15 N -0.599 5.599 16 C 0.163 3.837 17 C -0.265 4.265 18 H 0.072 0.928 19 C 0.008 3.992 20 N -0.902 5.902 21 Si 0.899 3.101 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.135 3.865 26 C -0.161 4.161 27 C -0.166 4.166 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.199 0.801 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.051 0.949 42 H -0.003 1.003 43 H 0.254 0.746 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 -7.460 1.488 11.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.187 6.187 3 C 0.186 3.814 4 N -0.277 5.277 5 C 0.045 3.955 6 C -0.163 4.163 7 C -0.228 4.228 8 C -0.052 4.052 9 C -0.225 4.225 10 C 0.360 3.640 11 O -0.415 6.415 12 N -0.332 5.332 13 C -0.074 4.074 14 C -0.010 4.010 15 N -0.322 5.322 16 C 0.019 3.981 17 C -0.394 4.394 18 H 0.089 0.911 19 C -0.191 4.191 20 N -0.546 5.546 21 Si 0.728 3.272 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.202 1.202 25 C 0.032 3.968 26 C -0.219 4.219 27 C -0.223 4.223 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.165 0.835 35 H 0.215 0.785 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.015 0.985 43 H 0.064 0.936 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.103 -8.223 1.627 12.374 hybrid contribution 0.385 1.326 0.000 1.381 sum -8.719 -6.897 1.627 11.235 Atomic orbital electron populations 1.22853 0.77999 1.02715 1.02124 1.86424 1.22038 1.23675 1.86596 1.19659 0.87932 0.84721 0.89080 1.67172 1.40210 0.98185 1.22148 1.21152 0.92378 0.91689 0.90299 1.20790 0.99113 0.93151 1.03284 1.21940 0.93302 1.00960 1.06604 1.23365 1.04633 0.89819 0.87388 1.19903 0.91258 0.95327 1.16018 1.17835 0.80828 0.87288 0.78091 1.90733 1.71362 1.34102 1.45254 1.48026 1.16508 1.08778 1.59840 1.23556 0.99281 0.84387 1.00169 1.21679 0.95365 0.89160 0.94800 1.43996 1.23351 1.00644 1.64219 1.20850 0.85823 0.96502 0.94973 1.19212 1.21614 0.86174 1.12445 0.91070 1.24920 1.00226 0.98437 0.95503 1.70083 1.43344 1.28253 1.12929 0.86354 0.78527 0.84479 0.77811 1.21388 1.21673 1.20208 1.20971 0.92853 0.86838 0.96160 1.22142 1.02052 1.01700 0.96008 1.22370 0.96196 1.02341 1.01414 0.92445 0.92543 0.88822 0.90078 0.90551 0.90007 0.83492 0.78469 0.90804 0.87995 0.93463 0.91889 0.95493 0.93027 0.98489 0.93561 0.88543 0.91983 0.91722 0.92611 0.92094 0.91921 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 101.05 1.05 1.53 16 2 O -0.28 -4.89 8.98 -37.17 -0.33 -5.22 16 3 C 0.37 6.58 7.48 -16.61 -0.12 6.45 16 4 N -0.55 -9.06 9.11 -9.21 -0.08 -9.15 16 5 C 0.18 2.77 6.78 -82.53 -0.56 2.21 16 6 C -0.11 -1.19 10.16 36.00 0.37 -0.83 16 7 C -0.21 -3.45 9.71 -39.50 -0.38 -3.83 16 8 C -0.03 -0.50 7.60 -38.89 -0.30 -0.80 16 9 C -0.22 -4.06 5.63 -104.69 -0.59 -4.64 16 10 C 0.57 10.80 7.38 -12.48 -0.09 10.70 16 11 O -0.54 -11.22 15.10 -13.92 -0.21 -11.43 16 12 N -0.60 -10.02 2.44 -167.33 -0.41 -10.43 16 13 C 0.05 0.89 4.70 -4.04 -0.02 0.87 16 14 C 0.12 2.20 4.85 -4.04 -0.02 2.18 16 15 N -0.60 -13.40 2.93 -181.11 -0.53 -13.93 16 16 C 0.16 3.65 9.02 59.85 0.54 4.19 16 17 C -0.27 -6.43 8.81 -15.06 -0.13 -6.56 16 18 H 0.07 1.67 7.39 -52.48 -0.39 1.28 16 19 C 0.01 0.21 5.08 -17.43 -0.09 0.12 16 20 N -0.90 -24.05 10.52 55.49 0.58 -23.47 16 21 Si 0.90 19.98 29.58 -169.99 -5.03 14.96 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 C 0.13 1.94 3.25 -67.94 -0.22 1.72 16 26 C -0.16 -2.03 9.26 37.15 0.34 -1.69 16 27 C -0.17 -2.11 7.81 37.16 0.29 -1.82 16 28 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.83 8.07 -51.93 -0.42 0.42 16 34 H 0.15 2.37 8.06 -52.49 -0.42 1.94 16 35 H 0.20 3.75 1.14 -52.48 -0.06 3.69 16 36 H 0.07 1.31 6.77 -51.93 -0.35 0.96 16 37 H 0.10 1.96 3.98 -52.15 -0.21 1.75 16 38 H 0.05 0.91 7.00 -51.93 -0.36 0.54 16 39 H 0.06 1.09 4.36 -51.93 -0.23 0.86 16 40 H 0.03 0.65 7.53 -51.93 -0.39 0.26 16 41 H 0.05 1.27 6.97 -51.93 -0.36 0.91 16 42 H 0.00 -0.07 7.85 -51.93 -0.41 -0.47 16 43 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 44 H 0.10 1.48 6.92 -51.93 -0.36 1.12 16 45 H 0.06 0.81 6.92 -51.93 -0.36 0.45 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.81 7.97 -51.93 -0.41 0.40 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 0.97 5.87 -51.93 -0.30 0.67 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -29.49 388.02 -7.65 -37.13 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.55 Total: 5.87 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 0.06 Total: 9.81 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.44 Total: -56.97 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.54 Total: -16.65 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.49 -7.65 -37.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677215596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.783 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds