Wall clock time and date at job start Tue Mar 31 2020 18:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35423 * 117.00023 * 2 1 4 4 N 1.32232 * 119.80037 * 0.02562 * 3 2 1 5 5 C 1.31880 * 121.80018 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.40737 * 179.97438 * 5 4 3 7 7 C 1.38362 * 121.18702 * 0.27710 * 5 4 3 8 8 C 1.38334 * 119.45150 * 359.45138 * 7 5 4 9 9 C 1.39984 * 118.35551 * 0.53200 * 8 7 5 10 10 C 1.47525 * 120.60203 * 179.71207 * 9 8 7 11 11 O 1.21585 * 119.99935 * 150.89477 * 10 9 8 12 12 N 1.34773 * 119.99806 * 330.89429 * 10 9 8 13 13 C 1.46506 * 120.00107 * 7.20130 * 12 10 9 14 14 C 1.53001 * 109.47160 * 97.46627 * 13 12 10 15 15 N 1.46499 * 109.46874 * 180.02562 * 14 13 12 16 16 C 1.46508 * 119.99443 * 269.99510 * 15 14 13 17 17 C 1.36930 * 120.00499 * 90.00109 * 15 14 13 18 18 H 1.08008 * 119.99668 * 18.51788 * 17 15 14 19 19 C 1.38813 * 120.00368 * 198.51255 * 17 15 14 20 20 N 1.31619 * 119.99740 * 14.08910 * 19 17 15 21 21 Si 1.86798 * 120.00234 * 194.08722 * 19 17 15 22 22 H 1.48496 * 109.47129 * 90.00083 * 21 19 17 23 23 H 1.48502 * 109.47120 * 210.00463 * 21 19 17 24 24 H 1.48503 * 109.46780 * 330.00070 * 21 19 17 25 25 C 1.46500 * 120.00313 * 187.20257 * 12 10 9 26 26 C 1.52994 * 109.47304 * 114.17335 * 25 12 10 27 27 C 1.52997 * 109.47290 * 234.17652 * 25 12 10 28 28 H 1.09004 * 109.46768 * 299.99527 * 1 2 3 29 29 H 1.08994 * 109.47485 * 59.99862 * 1 2 3 30 30 H 1.09005 * 109.47500 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47382 * 90.00261 * 6 5 4 32 32 H 1.09002 * 109.47678 * 330.00196 * 6 5 4 33 33 H 1.08999 * 109.47242 * 210.00210 * 6 5 4 34 34 H 1.07995 * 120.27270 * 179.72220 * 7 5 4 35 35 H 1.08005 * 120.82061 * 180.24230 * 8 7 5 36 36 H 1.08997 * 109.47007 * 217.46656 * 13 12 10 37 37 H 1.08999 * 109.46787 * 337.46638 * 13 12 10 38 38 H 1.08997 * 109.47184 * 299.99920 * 14 13 12 39 39 H 1.08994 * 109.46798 * 60.00307 * 14 13 12 40 40 H 1.08998 * 109.46753 * 93.88098 * 16 15 14 41 41 H 1.09006 * 109.46911 * 213.87099 * 16 15 14 42 42 H 1.08998 * 109.47316 * 333.87572 * 16 15 14 43 43 H 0.97001 * 119.99894 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.46650 * 354.17164 * 25 12 10 45 45 H 1.09006 * 109.47407 * 60.00293 * 26 25 12 46 46 H 1.08999 * 109.47229 * 180.02562 * 26 25 12 47 47 H 1.09001 * 109.47389 * 300.00218 * 26 25 12 48 48 H 1.09006 * 109.47358 * 59.99241 * 27 25 12 49 49 H 1.09000 * 109.47617 * 179.97438 * 27 25 12 50 50 H 1.09002 * 109.47280 * 299.99993 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3131 0.0005 5 6 1.8771 3.5083 0.0010 6 6 1.0001 4.7338 0.0010 7 6 3.2527 3.6574 -0.0047 8 6 4.0587 2.5332 0.0005 9 6 3.4450 1.2751 0.0000 10 6 4.2570 0.0434 -0.0010 11 8 3.8236 -0.9708 0.5107 12 7 5.4791 0.0424 -0.5692 13 6 6.0670 1.2974 -1.0444 14 6 7.0213 1.8478 0.0173 15 7 7.6086 3.1030 -0.4577 16 6 8.8595 3.0840 -1.2202 17 6 6.9887 4.2940 -0.1890 18 1 6.2561 4.3550 0.6023 19 6 7.3018 5.4230 -0.9334 20 7 7.9716 5.3034 -2.0601 21 14 6.7725 7.1120 -0.3363 22 1 7.8364 7.6887 0.5242 23 1 6.5441 8.0007 -1.5039 24 1 5.5159 6.9891 0.4455 25 6 6.2197 -1.2135 -0.7116 26 6 6.3746 -1.5487 -2.1964 27 6 7.6032 -1.0648 -0.0754 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.7882 5.0290 1.0287 32 1 0.0650 4.5115 -0.5132 33 1 1.5125 5.5473 -0.5124 34 1 3.6934 4.6434 -0.0087 35 1 5.1350 2.6240 0.0002 36 1 6.6170 1.1143 -1.9674 37 1 5.2744 2.0220 -1.2313 38 1 6.4712 2.0309 0.9404 39 1 7.8137 1.1232 0.2042 40 1 8.6347 3.0679 -2.2866 41 1 9.4419 3.9749 -0.9851 42 1 9.4325 2.1951 -0.9561 43 1 8.1901 6.0923 -2.5805 44 1 5.6748 -2.0151 -0.2130 45 1 6.9195 -0.7470 -2.6950 46 1 6.9252 -2.4834 -2.3023 47 1 5.3890 -1.6547 -2.6497 48 1 7.4929 -0.8259 0.9824 49 1 8.1541 -1.9993 -0.1810 50 1 8.1481 -0.2631 -0.5739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677215596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:54 Heat of formation + Delta-G solvation = 7.894262 kcal Electronic energy + Delta-G solvation = -31270.101428 eV Core-core repulsion = 27299.823110 eV Total energy + Delta-G solvation = -3970.278319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.29717 -40.70886 -39.18101 -38.26245 -36.90200 -35.03081 -33.38954 -32.80214 -32.44176 -30.03154 -29.31535 -28.16119 -27.85713 -27.83497 -25.33657 -24.55416 -23.84360 -22.60285 -22.29976 -20.44029 -19.22945 -18.72389 -18.48300 -17.97413 -17.26338 -17.00843 -16.87999 -16.11918 -16.04668 -15.64695 -15.29272 -15.19413 -15.03394 -14.96455 -14.89426 -14.44811 -14.24307 -14.00813 -13.67700 -13.40849 -13.35268 -13.24713 -13.13775 -13.01496 -12.79480 -12.76118 -12.70664 -12.55787 -12.28438 -12.18189 -12.07433 -11.96102 -11.85609 -11.76428 -11.49926 -11.17648 -10.80788 -10.59939 -10.43762 -9.85813 -9.48235 -8.76692 -7.77521 -5.22220 -0.36740 0.18837 1.51586 1.55798 1.61857 1.68769 1.89163 2.04236 2.56044 2.65565 3.05364 3.37542 3.43990 3.73797 3.82456 3.88271 3.96803 4.05809 4.14976 4.22483 4.30710 4.35394 4.38337 4.39342 4.47744 4.57314 4.65645 4.68717 4.73121 4.75196 4.76872 4.78473 4.90656 4.92844 4.96132 5.01170 5.03530 5.11534 5.20411 5.33805 5.37026 5.42769 5.45436 5.64127 5.69053 5.80797 6.14099 6.28747 6.37175 6.68148 7.10849 7.19026 7.89095 8.32335 9.26016 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008870 B = 0.005753 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.820933 B = 4865.494390 C = 7621.448504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.358 3.642 4 N -0.550 5.550 5 C 0.187 3.813 6 C -0.104 4.104 7 C -0.219 4.219 8 C -0.033 4.033 9 C -0.243 4.243 10 C 0.567 3.433 11 O -0.563 6.563 12 N -0.592 5.592 13 C 0.068 3.932 14 C 0.125 3.875 15 N -0.611 5.611 16 C 0.176 3.824 17 C -0.259 4.259 18 H 0.078 0.922 19 C -0.041 4.041 20 N -0.933 5.933 21 Si 0.950 3.050 22 H -0.295 1.295 23 H -0.299 1.299 24 H -0.256 1.256 25 C 0.128 3.872 26 C -0.154 4.154 27 C -0.159 4.159 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.152 0.848 35 H 0.187 0.813 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.005 0.995 41 H 0.024 0.976 42 H 0.028 0.972 43 H 0.247 0.753 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.044 0.956 48 H 0.053 0.947 49 H 0.090 0.910 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.128 -7.714 2.023 12.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.209 6.209 3 C 0.178 3.822 4 N -0.276 5.276 5 C 0.050 3.950 6 C -0.161 4.161 7 C -0.239 4.239 8 C -0.058 4.058 9 C -0.249 4.249 10 C 0.357 3.643 11 O -0.444 6.444 12 N -0.324 5.324 13 C -0.057 4.057 14 C -0.002 4.002 15 N -0.334 5.334 16 C 0.031 3.969 17 C -0.389 4.389 18 H 0.095 0.905 19 C -0.237 4.237 20 N -0.579 5.579 21 Si 0.779 3.221 22 H -0.222 1.222 23 H -0.226 1.226 24 H -0.180 1.180 25 C 0.025 3.975 26 C -0.212 4.212 27 C -0.216 4.216 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.137 0.863 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.170 0.830 35 H 0.203 0.797 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.024 0.976 41 H 0.042 0.958 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.111 0.889 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.109 0.891 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.082 -8.510 2.177 13.372 hybrid contribution 0.624 1.324 -0.135 1.469 sum -9.458 -7.187 2.042 12.053 Atomic orbital electron populations 1.23141 0.75687 1.04658 1.02615 1.86395 1.24469 1.23664 1.86367 1.19836 0.88023 0.85410 0.88908 1.67309 1.39829 0.98181 1.22309 1.21798 0.92534 0.92618 0.88003 1.20930 0.98890 0.91420 1.04833 1.22074 0.94037 1.00641 1.07127 1.23239 1.04234 0.90308 0.87994 1.19965 0.91887 0.95286 1.17768 1.17995 0.81292 0.87180 0.77868 1.90702 1.72035 1.35003 1.46623 1.48040 1.16105 1.09294 1.58978 1.23184 0.98467 0.84510 0.99542 1.21715 0.95896 0.88128 0.94502 1.44164 1.23603 1.01497 1.64125 1.20610 0.85910 0.96594 0.93748 1.19494 1.20733 0.86844 1.11793 0.90473 1.25535 1.01083 1.01236 0.95815 1.70234 1.45230 1.28328 1.14120 0.85515 0.78766 0.80848 0.76987 1.22207 1.22643 1.17974 1.21218 0.93307 0.85389 0.97539 1.22095 1.01832 1.02935 0.94332 1.22308 0.95148 1.03638 1.00545 0.91974 0.91921 0.86259 0.88150 0.89350 0.88675 0.83025 0.79660 0.90823 0.89410 0.93926 0.90031 0.97646 0.95757 0.95308 0.94407 0.89410 0.92339 0.88944 0.93658 0.92828 0.89077 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.38 113.37 1.18 1.97 16 2 O -0.30 -10.43 8.98 -68.80 -0.62 -11.05 16 3 C 0.36 12.78 7.48 85.13 0.64 13.42 16 4 N -0.55 -17.44 9.11 -296.06 -2.70 -20.14 16 5 C 0.19 5.42 6.78 42.58 0.29 5.71 16 6 C -0.10 -2.03 10.16 71.24 0.72 -1.31 16 7 C -0.22 -7.08 9.71 22.32 0.22 -6.86 16 8 C -0.03 -1.21 7.60 22.72 0.17 -1.03 16 9 C -0.24 -9.07 5.63 -19.91 -0.11 -9.18 16 10 C 0.57 21.67 7.38 86.69 0.64 22.30 16 11 O -0.56 -23.83 15.10 14.39 0.22 -23.61 16 12 N -0.59 -19.71 2.44 -801.58 -1.96 -21.67 16 13 C 0.07 2.38 4.70 86.38 0.41 2.78 16 14 C 0.12 4.56 4.85 86.38 0.42 4.98 16 15 N -0.61 -27.12 2.93 -726.92 -2.13 -29.25 16 16 C 0.18 7.88 9.02 127.77 1.15 9.03 16 17 C -0.26 -12.47 8.81 84.03 0.74 -11.73 16 18 H 0.08 3.57 7.39 -2.91 -0.02 3.55 16 19 C -0.04 -2.07 5.08 84.86 0.43 -1.64 16 20 N -0.93 -50.61 10.52 21.65 0.23 -50.38 16 21 Si 0.95 40.84 29.58 68.60 2.03 42.87 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 25 C 0.13 3.53 3.25 44.99 0.15 3.68 16 26 C -0.15 -3.66 9.26 71.98 0.67 -2.99 16 27 C -0.16 -3.74 7.81 71.98 0.56 -3.18 16 28 H 0.06 1.39 8.10 -2.38 -0.02 1.37 16 29 H 0.06 1.38 8.10 -2.39 -0.02 1.37 16 30 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.64 8.07 -2.39 -0.02 1.62 16 34 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 35 H 0.19 7.07 1.14 -2.91 0.00 7.06 16 36 H 0.07 2.59 6.77 -2.39 -0.02 2.58 16 37 H 0.09 3.41 3.98 -2.59 -0.01 3.40 16 38 H 0.04 1.62 7.00 -2.39 -0.02 1.60 16 39 H 0.08 2.69 4.36 -2.39 -0.01 2.68 16 40 H 0.01 0.26 7.53 -2.39 -0.02 0.24 16 41 H 0.02 1.19 6.97 -2.38 -0.02 1.18 16 42 H 0.03 1.08 7.85 -2.39 -0.02 1.06 16 43 H 0.25 13.24 8.31 -92.71 -0.77 12.47 16 44 H 0.09 2.63 6.92 -2.38 -0.02 2.61 16 45 H 0.06 1.43 6.92 -2.38 -0.02 1.42 16 46 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.05 1.34 7.97 -2.38 -0.02 1.32 16 49 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.07 1.64 5.87 -2.39 -0.01 1.63 16 Total: -1.00 -64.10 388.02 4.29 -59.81 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.95 Total: 27.47 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 8.27 Total: 25.95 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -6.56 Total: -121.44 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.40 Total: -34.66 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -64.10 4.29 -59.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677215596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.702 kcal (2) G-P(sol) polarization free energy of solvation -64.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds