Wall clock time and date at job start Tue Mar 31 2020 19:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39835 * 126.46315 * 2 1 4 4 C 1.35445 * 107.86987 * 180.30025 * 3 2 1 5 5 N 1.35532 * 108.86869 * 359.74292 * 4 3 2 6 6 C 1.46504 * 125.67734 * 180.02562 * 5 4 3 7 7 C 1.37654 * 108.64882 * 359.97438 * 5 4 3 8 8 C 1.46673 * 126.23517 * 180.02562 * 7 5 4 9 9 O 1.21697 * 119.99925 * 268.54548 * 8 7 5 10 10 N 1.34777 * 120.00174 * 88.54968 * 8 7 5 11 11 C 1.46929 * 120.63026 * 355.49689 * 10 8 7 12 12 C 1.53186 * 108.77818 * 126.41172 * 11 10 8 13 13 C 1.53037 * 109.31283 * 54.63478 * 12 11 10 14 14 C 1.53043 * 109.53858 * 298.63270 * 13 12 11 15 15 H 1.08999 * 109.52849 * 301.40220 * 14 13 12 16 16 N 1.46495 * 109.49922 * 181.31414 * 14 13 12 17 17 C 1.36932 * 120.00303 * 300.16688 * 16 14 13 18 18 H 1.08004 * 120.00125 * 41.00789 * 17 16 14 19 19 C 1.38817 * 120.00238 * 221.28197 * 17 16 14 20 20 N 1.31614 * 119.99657 * 6.86573 * 19 17 16 21 21 Si 1.86793 * 120.00045 * 186.86482 * 19 17 16 22 22 H 1.48502 * 109.47501 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47472 * 120.00216 * 21 19 17 24 24 H 1.48506 * 109.46959 * 240.00127 * 21 19 17 25 25 C 1.46504 * 119.99873 * 120.16264 * 16 14 13 26 26 C 1.52994 * 109.47286 * 274.83396 * 25 16 14 27 27 O 1.42905 * 109.47334 * 64.99983 * 26 25 16 28 28 C 1.46921 * 120.63403 * 175.51492 * 10 8 7 29 29 H 1.08996 * 109.46818 * 270.13698 * 1 2 3 30 30 H 1.09003 * 109.46950 * 30.13779 * 1 2 3 31 31 H 1.09003 * 109.47021 * 150.13814 * 1 2 3 32 32 H 1.08008 * 126.06430 * 0.02562 * 3 2 1 33 33 H 1.08001 * 125.56688 * 179.70474 * 4 3 2 34 34 H 1.08999 * 109.47335 * 274.88510 * 6 5 4 35 35 H 1.09003 * 109.47357 * 34.88524 * 6 5 4 36 36 H 1.09001 * 109.46896 * 154.88358 * 6 5 4 37 37 H 1.08996 * 109.58475 * 246.20059 * 11 10 8 38 38 H 1.09004 * 109.58186 * 6.62149 * 11 10 8 39 39 H 1.08995 * 109.49963 * 174.58792 * 12 11 10 40 40 H 1.09006 * 109.49715 * 294.64780 * 12 11 10 41 41 H 1.09005 * 109.46042 * 178.61750 * 13 12 11 42 42 H 1.08992 * 109.46256 * 58.65770 * 13 12 11 43 43 H 0.96997 * 119.99905 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47172 * 34.83490 * 25 16 14 45 45 H 1.08999 * 109.46874 * 154.82845 * 25 16 14 46 46 H 1.09003 * 109.47164 * 185.00235 * 26 25 16 47 47 H 1.09002 * 109.46999 * 305.00130 * 26 25 16 48 48 H 0.96700 * 114.00093 * 179.97438 * 27 26 25 49 49 H 1.09001 * 109.58835 * 113.79533 * 28 10 8 50 50 H 1.09007 * 109.70096 * 353.44817 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3381 1.1246 0.0000 4 6 3.6218 0.6928 -0.0068 5 7 3.6283 -0.6625 -0.0052 6 6 4.8225 -1.5112 -0.0105 7 6 2.3262 -1.1090 0.0032 8 6 1.8898 -2.5093 0.0080 9 8 1.6770 -3.0839 -1.0435 10 7 1.7245 -3.1596 1.1768 11 6 2.0711 -2.5121 2.4494 12 6 0.8590 -2.5806 3.3837 13 6 0.4080 -4.0364 3.5217 14 6 -0.0077 -4.5756 2.1510 15 1 -0.8132 -3.9622 1.7472 16 7 -0.4690 -5.9592 2.2892 17 6 0.3768 -6.9170 2.7814 18 1 1.0248 -6.6885 3.6147 19 6 0.4055 -8.1799 2.2058 20 7 -0.2775 -8.4174 1.1061 21 14 1.4133 -9.5419 2.9920 22 1 2.0837 -9.0215 4.2106 23 1 0.5197 -10.6690 3.3612 24 1 2.4385 -10.0181 2.0288 25 6 -1.8352 -6.3181 1.9007 26 6 -2.7860 -6.0432 3.0674 27 8 -2.8242 -4.6390 3.3301 28 6 1.1946 -4.5297 1.2027 29 1 -0.3633 0.0025 1.0276 30 1 -0.3633 0.8888 -0.5160 31 1 -0.3633 -0.8912 -0.5117 32 1 2.0138 2.1549 0.0004 33 1 4.4973 1.3251 -0.0130 34 1 5.1641 -1.6516 -1.0360 35 1 5.6101 -1.0339 0.5726 36 1 4.5819 -2.4797 0.4281 37 1 2.9140 -3.0310 2.9057 38 1 2.3351 -1.4700 2.2690 39 1 1.1327 -2.1900 4.3638 40 1 0.0458 -1.9849 2.9688 41 1 -0.4392 -4.0909 4.2054 42 1 1.2297 -4.6356 3.9136 43 1 -0.2573 -9.2997 0.7037 44 1 -2.1362 -5.7227 1.0387 45 1 -1.8734 -7.3763 1.6425 46 1 -3.7863 -6.3922 2.8109 47 1 -2.4340 -6.5693 3.9547 48 1 -3.4090 -4.3910 4.0593 49 1 1.9660 -5.2133 1.5574 50 1 0.8807 -4.8214 0.2004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689203963.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:57 Heat of formation + Delta-G solvation = -12.596802 kcal Electronic energy + Delta-G solvation = -31137.163864 eV Core-core repulsion = 27165.996986 eV Total energy + Delta-G solvation = -3971.166878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.39469 -39.25291 -37.30472 -36.15083 -34.62822 -33.68924 -32.21186 -31.19628 -30.35378 -29.56143 -28.21691 -27.10343 -25.40356 -24.72992 -24.17814 -22.26383 -21.67751 -20.39885 -20.11564 -19.48110 -18.15238 -17.28235 -16.76380 -16.24462 -16.19149 -15.23536 -15.15799 -14.91732 -14.60028 -14.41635 -13.85539 -13.72943 -13.41741 -13.39183 -13.27869 -13.19818 -13.02009 -12.79749 -12.67882 -12.51572 -12.26929 -11.99631 -11.91545 -11.76139 -11.42079 -11.26235 -11.12454 -10.98417 -10.68826 -10.56001 -10.40351 -10.18795 -9.96427 -9.82410 -9.65582 -9.51409 -9.14900 -8.54474 -8.52381 -8.17903 -7.96865 -6.49614 -5.78407 -3.46888 2.00108 2.45530 2.88810 3.12081 3.31333 3.39968 3.41033 3.52140 4.43060 4.63982 4.71434 5.00170 5.01298 5.11141 5.20496 5.27302 5.31593 5.34969 5.38479 5.40456 5.54076 5.55866 5.75569 5.83218 5.88054 5.99063 6.07672 6.11543 6.14778 6.18641 6.24239 6.35061 6.41511 6.43668 6.49849 6.61140 6.72696 6.79133 6.89541 6.93773 7.08228 7.14180 7.22471 7.22926 7.27281 7.67317 7.79106 7.83472 8.36368 8.46573 8.55597 9.20697 9.79286 10.40930 11.19993 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014145 B = 0.003869 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.077295 B = 7234.784759 C = 8178.242329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.120 4.120 3 C -0.200 4.200 4 C -0.004 4.004 5 N -0.426 5.426 6 C 0.070 3.930 7 C -0.026 4.026 8 C 0.582 3.418 9 O -0.533 6.533 10 N -0.592 5.592 11 C 0.110 3.890 12 C -0.128 4.128 13 C -0.122 4.122 14 C 0.178 3.822 15 H 0.057 0.943 16 N -0.571 5.571 17 C -0.253 4.253 18 H 0.061 0.939 19 C 0.012 3.988 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.145 3.855 26 C 0.055 3.945 27 O -0.568 6.568 28 C 0.103 3.897 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.138 0.862 33 H 0.164 0.836 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.256 0.744 44 H 0.026 0.974 45 H 0.121 0.879 46 H 0.021 0.979 47 H 0.038 0.962 48 H 0.354 0.646 49 H 0.074 0.926 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.953 16.089 3.243 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C -0.224 4.224 4 C -0.137 4.137 5 N -0.101 5.101 6 C -0.072 4.072 7 C -0.139 4.139 8 C 0.368 3.632 9 O -0.409 6.409 10 N -0.325 5.325 11 C -0.013 4.013 12 C -0.167 4.167 13 C -0.161 4.161 14 C 0.070 3.930 15 H 0.075 0.925 16 N -0.290 5.290 17 C -0.383 4.383 18 H 0.078 0.922 19 C -0.188 4.188 20 N -0.538 5.538 21 Si 0.729 3.271 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.215 1.215 25 C 0.019 3.981 26 C -0.025 4.025 27 O -0.371 6.371 28 C -0.019 4.019 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.156 0.844 33 H 0.181 0.819 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.138 0.862 46 H 0.039 0.961 47 H 0.057 0.943 48 H 0.198 0.802 49 H 0.092 0.908 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.569 15.313 2.059 16.424 hybrid contribution 0.273 -0.815 0.932 1.268 sum 5.841 14.499 2.991 15.915 Atomic orbital electron populations 1.20191 0.89812 1.02300 1.01827 1.19736 0.95322 0.90860 1.06808 1.20627 0.91714 0.98298 1.11804 1.21771 0.99251 0.82457 1.10179 1.43826 1.05061 1.06223 1.55038 1.22103 0.85903 0.95499 1.03669 1.20188 0.83798 0.93910 1.16050 1.17207 0.78335 0.83720 0.83986 1.90840 1.51548 1.67227 1.31285 1.48335 1.62463 1.16390 1.05284 1.21696 0.97765 0.97519 0.84294 1.21884 0.97377 0.99132 0.98326 1.21909 1.01074 0.92959 1.00175 1.20541 0.93113 0.87545 0.91797 0.92519 1.43637 1.08330 1.03040 1.74019 1.19073 1.17703 0.91646 1.09875 0.92172 1.25396 0.98642 0.99466 0.95249 1.69727 1.43126 1.21724 1.19201 0.86275 0.79993 0.82113 0.78714 1.20182 1.21547 1.21539 1.21271 0.82257 1.03660 0.90927 1.23229 0.97857 0.80246 1.01143 1.86614 1.69370 1.25327 1.55787 1.22453 0.97942 0.78778 1.02745 0.91653 0.91717 0.91954 0.84387 0.81898 0.90512 0.89512 0.89739 0.91859 0.90470 0.91741 0.91843 0.91618 0.92410 0.93369 0.95573 0.86214 0.96067 0.94320 0.80248 0.90797 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.20 36.01 0.37 -0.76 16 2 C -0.12 -1.73 6.21 -104.16 -0.65 -2.37 16 3 C -0.20 -2.38 10.76 -39.98 -0.43 -2.81 16 4 C 0.00 -0.05 11.38 -16.91 -0.19 -0.24 16 5 N -0.43 -5.37 3.16 -120.23 -0.38 -5.75 16 6 C 0.07 0.68 10.98 59.85 0.66 1.34 16 7 C -0.03 -0.41 4.56 -81.98 -0.37 -0.78 16 8 C 0.58 10.93 6.46 -12.86 -0.08 10.85 16 9 O -0.53 -12.21 16.54 5.19 0.09 -12.13 16 10 N -0.59 -10.55 2.97 -174.31 -0.52 -11.07 16 11 C 0.11 1.60 6.35 -3.71 -0.02 1.57 16 12 C -0.13 -1.87 6.08 -26.62 -0.16 -2.03 16 13 C -0.12 -2.20 5.10 -26.69 -0.14 -2.34 16 14 C 0.18 3.77 2.17 -67.81 -0.15 3.62 16 15 H 0.06 1.27 7.64 -51.93 -0.40 0.88 16 16 N -0.57 -13.64 2.36 -165.53 -0.39 -14.03 16 17 C -0.25 -6.47 8.13 -15.06 -0.12 -6.59 16 18 H 0.06 1.54 6.86 -52.48 -0.36 1.18 16 19 C 0.01 0.31 5.22 -17.43 -0.09 0.22 16 20 N -0.89 -24.77 10.95 55.49 0.61 -24.17 16 21 Si 0.90 20.86 29.56 -169.99 -5.02 15.83 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.15 3.41 5.59 -4.04 -0.02 3.38 16 26 C 0.05 1.08 7.39 37.15 0.27 1.35 16 27 O -0.57 -10.27 12.27 -35.23 -0.43 -10.71 16 28 C 0.10 2.20 5.75 -3.71 -0.02 2.18 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.96 7.96 -51.93 -0.41 0.55 16 32 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.93 7.68 -51.93 -0.40 0.53 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.04 6.33 -51.93 -0.33 0.71 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.24 7.63 -51.93 -0.40 0.84 16 42 H 0.06 1.10 7.08 -51.93 -0.37 0.73 16 43 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 45 H 0.12 3.12 5.30 -51.93 -0.28 2.85 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.35 4.65 9.12 45.56 0.42 5.07 16 49 H 0.07 1.67 7.50 -51.93 -0.39 1.28 16 50 H 0.09 2.11 7.04 -51.92 -0.37 1.74 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -31.86 397.32 -8.70 -40.55 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -7.48 Total: 8.88 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -1.15 Total: 6.60 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.68 Total: -55.02 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.35 Total: -22.83 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.86 -8.70 -40.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689203963.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.957 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds