Wall clock time and date at job start Tue Mar 31 2020 19:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34510 * 125.79407 * 2 1 4 4 C 1.41385 * 106.84007 * 180.02562 * 3 2 1 5 5 C 1.34510 * 106.83949 * 359.97438 * 4 3 2 6 6 C 1.50705 * 125.78318 * 179.73383 * 5 4 3 7 7 C 1.50696 * 109.46739 * 90.00576 * 6 5 4 8 8 O 1.21275 * 120.00386 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99927 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00346 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47177 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47005 * 179.97438 * 11 10 9 13 13 N 1.46893 * 109.47072 * 179.97438 * 12 11 10 14 14 C 1.46900 * 111.00343 * 294.29936 * 13 12 11 15 15 C 1.53234 * 109.34213 * 172.74514 * 14 13 12 16 16 N 1.47078 * 108.51967 * 53.83169 * 15 14 13 17 17 C 1.36941 * 120.88233 * 128.83856 * 16 15 14 18 18 H 1.07991 * 120.00057 * 206.56252 * 17 16 15 19 19 C 1.38813 * 119.99654 * 26.55412 * 17 16 15 20 20 N 1.31621 * 120.00169 * 17.03782 * 19 17 16 21 21 Si 1.86802 * 119.99793 * 197.02992 * 19 17 16 22 22 H 1.48501 * 109.47134 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47008 * 120.00618 * 21 19 17 24 24 H 1.48500 * 109.47034 * 240.00332 * 21 19 17 25 25 C 1.47077 * 118.23947 * 308.81201 * 16 15 14 26 26 C 1.46901 * 110.99865 * 169.99889 * 13 12 11 27 27 O 1.34300 * 108.42440 * 0.02562 * 5 4 3 28 28 H 1.09000 * 109.47699 * 89.99479 * 1 2 3 29 29 H 1.09000 * 109.47595 * 209.99911 * 1 2 3 30 30 H 1.09010 * 109.46826 * 329.99852 * 1 2 3 31 31 H 1.08001 * 126.57515 * 0.04495 * 3 2 1 32 32 H 1.08004 * 126.57417 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.46683 * 210.00208 * 6 5 4 34 34 H 1.08999 * 109.47331 * 330.00349 * 6 5 4 35 35 H 0.97006 * 119.99756 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.46669 * 299.99788 * 10 9 7 37 37 H 1.08994 * 109.47362 * 59.99078 * 10 9 7 38 38 H 1.08998 * 109.46766 * 299.99016 * 11 10 9 39 39 H 1.08999 * 109.47232 * 59.99659 * 11 10 9 40 40 H 1.09000 * 109.46973 * 300.00029 * 12 11 10 41 41 H 1.09005 * 109.46823 * 59.99661 * 12 11 10 42 42 H 1.08995 * 109.49283 * 292.71200 * 14 13 12 43 43 H 1.09007 * 109.49019 * 52.78671 * 14 13 12 44 44 H 1.09009 * 109.63043 * 294.12585 * 15 14 13 45 45 H 1.08997 * 109.63250 * 173.54110 * 15 14 13 46 46 H 0.96999 * 119.99901 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.63447 * 291.48039 * 25 16 15 48 48 H 1.09002 * 109.79188 * 170.99043 * 25 16 15 49 49 H 1.09001 * 109.49340 * 307.20851 * 26 13 12 50 50 H 1.08998 * 109.49398 * 67.29514 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6309 0.6318 -0.0006 5 6 3.5813 -0.7124 -0.0004 6 6 4.7705 -1.6381 -0.0065 7 6 5.1740 -1.9467 1.4123 8 8 4.5571 -1.4623 2.3372 9 7 6.2212 -2.7603 1.6532 10 6 6.6132 -3.0608 3.0324 11 6 7.8206 -4.0005 3.0262 12 6 8.2304 -4.3139 4.4666 13 7 9.3893 -5.2165 4.4607 14 6 9.0336 -6.5262 3.8982 15 6 10.3014 -7.3726 3.7419 16 7 10.9943 -7.4200 5.0383 17 6 11.3790 -8.6145 5.5864 18 1 11.4809 -8.7093 6.6573 19 6 11.6377 -9.7035 4.7654 20 7 11.8442 -9.5229 3.4781 21 14 11.6930 -11.4254 5.4877 22 1 11.4297 -11.3584 6.9476 23 1 10.6586 -12.2687 4.8367 24 1 13.0343 -12.0178 5.2528 25 6 11.2637 -6.1504 5.7303 26 6 9.9579 -5.3521 5.8084 27 8 2.2923 -1.0895 -0.0002 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.9666 2.1203 0.0007 32 1 4.5213 1.2431 -0.0004 33 1 4.5078 -2.5635 -0.5190 34 1 5.6012 -1.1590 -0.5245 35 1 6.7149 -3.1474 0.9133 36 1 6.8752 -2.1354 3.5454 37 1 5.7826 -3.5404 3.5499 38 1 7.5582 -4.9258 2.5133 39 1 8.6515 -3.5211 2.5085 40 1 8.4929 -3.3884 4.9792 41 1 7.3996 -4.7930 4.9846 42 1 8.3383 -7.0327 4.5675 43 1 8.5657 -6.3884 2.9234 44 1 10.9536 -6.9206 2.9945 45 1 10.0317 -8.3827 3.4337 46 1 12.0246 -10.2839 2.9044 47 1 12.0082 -5.5809 5.1741 48 1 11.6318 -6.3495 6.7367 49 1 10.1605 -4.3628 6.2189 50 1 9.2497 -5.8750 6.4510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690056991.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:58 Heat of formation + Delta-G solvation = 2.501680 kcal Electronic energy + Delta-G solvation = -27834.642545 eV Core-core repulsion = 23864.130387 eV Total energy + Delta-G solvation = -3970.512159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.85167 -39.86711 -38.28033 -35.86950 -34.38080 -33.46423 -33.34411 -32.09118 -30.81927 -29.94400 -29.90539 -26.96212 -25.53263 -24.21216 -22.92087 -22.41531 -22.05149 -21.26484 -20.77648 -20.16993 -19.10268 -17.53595 -17.12581 -16.78899 -16.16931 -16.13001 -15.89232 -15.17203 -14.99516 -14.55364 -14.41066 -14.23218 -13.84244 -13.73827 -13.63517 -13.43459 -13.27583 -13.14458 -13.06458 -13.02868 -12.90709 -12.47056 -12.11540 -11.96759 -11.80635 -11.58236 -11.32304 -11.06258 -10.89355 -10.74669 -10.40935 -10.29522 -10.21941 -10.08064 -10.03713 -9.74424 -9.58759 -9.31110 -8.53969 -8.51835 -7.83825 -6.67265 -5.79080 -3.19899 1.40078 2.31302 2.34356 2.55167 3.04122 3.36214 3.44249 3.46450 4.17001 4.29651 4.49739 4.50744 4.56712 4.73721 4.76520 4.90896 4.91509 5.05762 5.07015 5.08610 5.17086 5.32938 5.37878 5.43479 5.48664 5.55272 5.61393 5.69834 5.70907 5.87336 5.89203 5.93868 6.03760 6.12923 6.15606 6.22890 6.24546 6.28087 6.34625 6.54165 6.68798 6.90772 6.92764 7.20078 7.24439 7.59596 7.63302 7.70160 7.81598 7.93845 8.42750 9.20753 9.84170 10.42575 11.29800 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027316 B = 0.001565 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.778103 B =17882.300812 C =18315.872155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.012 4.012 3 C -0.212 4.212 4 C -0.192 4.192 5 C 0.003 3.997 6 C -0.061 4.061 7 C 0.512 3.488 8 O -0.530 6.530 9 N -0.727 5.727 10 C 0.121 3.879 11 C -0.128 4.128 12 C 0.058 3.942 13 N -0.533 5.533 14 C 0.033 3.967 15 C 0.178 3.822 16 N -0.596 5.596 17 C -0.251 4.251 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.148 3.852 26 C 0.045 3.955 27 O -0.171 6.171 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.403 0.597 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.028 0.972 42 H 0.024 0.976 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.088 0.912 46 H 0.253 0.747 47 H 0.025 0.975 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.852 19.487 -9.535 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 C -0.231 4.231 4 C -0.211 4.211 5 C -0.047 4.047 6 C -0.101 4.101 7 C 0.297 3.703 8 O -0.406 6.406 9 N -0.380 5.380 10 C -0.003 4.003 11 C -0.166 4.166 12 C -0.071 4.071 13 N -0.258 5.258 14 C -0.096 4.096 15 C 0.052 3.948 16 N -0.319 5.319 17 C -0.380 4.380 18 H 0.084 0.916 19 C -0.198 4.198 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.022 3.978 26 C -0.085 4.085 27 O -0.068 6.068 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.238 0.762 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.043 0.957 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -17.983 19.596 -9.239 28.155 hybrid contribution -0.199 -1.249 0.477 1.352 sum -18.182 18.347 -8.761 27.275 Atomic orbital electron populations 1.20304 0.85142 1.04138 1.03398 1.22415 0.93964 0.84111 1.05739 1.21530 0.92653 0.99349 1.09572 1.21495 0.98292 0.93641 1.07671 1.21383 0.82636 0.93816 1.06910 1.20093 0.93783 1.00342 0.95857 1.20395 0.80172 0.78788 0.90962 1.90754 1.52944 1.51058 1.45830 1.45981 1.32723 1.49652 1.09624 1.21360 0.97319 0.99400 0.82198 1.21799 0.96747 0.99400 0.98638 1.21940 0.92647 0.97287 0.95201 1.61952 1.28573 1.12464 1.22807 1.22954 1.00218 0.88793 0.97668 1.20862 0.88574 0.98192 0.87186 1.44127 1.65753 1.00861 1.21157 1.19249 1.40227 0.87405 0.91153 0.91605 1.25016 0.99928 0.98876 0.95948 1.70040 1.51437 1.29371 1.04008 0.86232 0.77263 0.84816 0.78528 1.20316 1.21607 1.21705 1.20975 0.92739 0.87699 0.96424 1.22613 0.98413 0.99109 0.88337 1.83921 1.16188 1.35164 1.71504 0.90141 0.90528 0.89345 0.83531 0.83565 0.86927 0.85716 0.76225 0.91355 0.91573 0.90950 0.90310 0.91187 0.95339 0.95786 0.91988 0.95618 0.89417 0.93702 0.95685 0.92634 0.92025 0.95442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.42 36.01 0.38 -0.05 16 2 C -0.01 -0.12 7.32 -35.63 -0.26 -0.38 16 3 C -0.21 -2.01 10.81 -39.70 -0.43 -2.44 16 4 C -0.19 -1.92 10.81 -39.70 -0.43 -2.35 16 5 C 0.00 0.03 5.81 -35.62 -0.21 -0.18 16 6 C -0.06 -0.45 6.23 -29.03 -0.18 -0.63 16 7 C 0.51 5.40 7.82 -10.99 -0.09 5.32 16 8 O -0.53 -8.12 16.03 5.56 0.09 -8.03 16 9 N -0.73 -6.33 5.56 -60.30 -0.33 -6.67 16 10 C 0.12 1.24 5.67 -4.04 -0.02 1.22 16 11 C -0.13 -1.39 5.26 -26.73 -0.14 -1.53 16 12 C 0.06 0.78 4.96 -3.82 -0.02 0.76 16 13 N -0.53 -9.16 4.63 -234.32 -1.08 -10.25 16 14 C 0.03 0.62 5.46 -3.70 -0.02 0.60 16 15 C 0.18 4.24 5.42 -3.61 -0.02 4.23 16 16 N -0.60 -15.07 3.04 -172.02 -0.52 -15.60 16 17 C -0.25 -6.91 9.63 -15.06 -0.15 -7.06 16 18 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 19 C 0.00 0.02 4.93 -17.43 -0.09 -0.07 16 20 N -0.90 -26.12 11.15 55.49 0.62 -25.50 16 21 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.15 3.15 6.69 -3.60 -0.02 3.13 16 26 C 0.04 0.80 5.62 -3.70 -0.02 0.78 16 27 O -0.17 -2.00 10.65 5.71 0.06 -1.94 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 33 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.40 2.36 8.47 -40.82 -0.35 2.01 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.86 7.97 -51.93 -0.41 0.45 16 41 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 1.04 6.16 -51.93 -0.32 0.72 16 44 H 0.03 0.66 8.14 -51.92 -0.42 0.23 16 45 H 0.09 2.32 6.12 -51.93 -0.32 2.00 16 46 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 49 H 0.06 0.94 7.99 -51.93 -0.41 0.53 16 50 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -34.91 404.05 -10.28 -45.19 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.45 Total: -1.26 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.72 Total: 1.35 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -1.32 Total: -58.01 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.15 Total: -9.97 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.91 -10.28 -45.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690056991.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.690 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds