Wall clock time and date at job start Tue Mar 31 2020 18:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.51268 * 120.85342 * 2 1 4 4 C 1.52802 * 108.76523 * 231.31575 * 3 2 1 5 5 C 1.52967 * 109.47661 * 305.60257 * 4 3 2 6 6 C 1.50700 * 109.35268 * 183.53816 * 5 4 3 7 7 O 1.21279 * 119.99964 * 239.67849 * 6 5 4 8 8 N 1.34783 * 119.99957 * 59.68332 * 6 5 4 9 9 C 1.46503 * 119.99867 * 179.97438 * 8 6 5 10 10 H 1.09000 * 112.84641 * 23.80128 * 9 8 6 11 11 C 1.53776 * 113.61155 * 154.99907 * 9 8 6 12 12 C 1.53784 * 87.08069 * 89.11699 * 11 9 8 13 13 H 1.08997 * 113.60894 * 270.88021 * 12 11 9 14 14 N 1.46900 * 113.61392 * 140.06592 * 12 11 9 15 15 C 1.46900 * 111.00002 * 154.99793 * 14 12 11 16 16 C 1.50694 * 109.47179 * 179.97438 * 15 14 12 17 17 O 1.21300 * 120.00208 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00296 * 180.02562 * 16 15 14 19 19 C 1.37109 * 120.00424 * 180.02562 * 18 16 15 20 20 H 1.07994 * 119.99486 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99816 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00460 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99639 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47375 * 89.99552 * 23 21 19 25 25 H 1.48497 * 109.46768 * 209.99784 * 23 21 19 26 26 H 1.48499 * 109.46709 * 329.99216 * 23 21 19 27 27 C 1.53779 * 113.61342 * 252.49770 * 9 8 6 28 28 C 1.52956 * 109.81926 * 63.46996 * 5 4 3 29 29 C 1.51271 * 120.84976 * 180.27617 * 2 1 3 30 30 H 1.08002 * 120.00352 * 179.72674 * 1 2 3 31 31 H 1.08005 * 119.99880 * 359.44729 * 1 2 3 32 32 H 1.09005 * 109.62156 * 351.08078 * 3 2 1 33 33 H 1.08991 * 109.63445 * 111.65250 * 3 2 1 34 34 H 1.08995 * 109.54837 * 185.53910 * 4 3 2 35 35 H 1.08998 * 109.33821 * 65.53712 * 4 3 2 36 36 H 1.09006 * 109.41339 * 303.35811 * 5 4 3 37 37 H 0.96998 * 120.00051 * 359.97438 * 8 6 5 38 38 H 1.09002 * 113.60962 * 203.66108 * 11 9 8 39 39 H 1.08996 * 113.61704 * 334.56649 * 11 9 8 40 40 H 1.00897 * 111.00625 * 31.04178 * 14 12 11 41 41 H 1.08994 * 109.47234 * 299.99916 * 15 14 12 42 42 H 1.09002 * 109.46790 * 59.99944 * 15 14 12 43 43 H 0.97007 * 120.00271 * 0.02562 * 18 16 15 44 44 H 0.96993 * 119.99863 * 180.02562 * 22 21 19 45 45 H 1.09004 * 113.61318 * 25.43029 * 27 9 8 46 46 H 1.08995 * 113.61434 * 156.33580 * 27 9 8 47 47 H 1.08999 * 109.48018 * 176.42158 * 28 5 4 48 48 H 1.08997 * 109.48547 * 56.37347 * 28 5 4 49 49 H 1.09000 * 109.62467 * 248.34462 * 29 2 1 50 50 H 1.08993 * 109.62626 * 8.72255 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1141 1.2568 -1.1294 5 6 3.9804 0.0045 -0.9843 6 6 5.0486 0.0103 -2.0472 7 8 5.1102 -0.8967 -2.8500 8 7 5.9357 1.0234 -2.1056 9 6 6.9745 1.0287 -3.1387 10 1 6.7044 0.4373 -4.0135 11 6 7.4947 2.4345 -3.4819 12 6 8.5324 2.2378 -2.3641 13 1 8.1853 2.5645 -1.3838 14 7 9.8647 2.7576 -2.6999 15 6 10.6204 3.0927 -1.4856 16 6 11.9787 3.6208 -1.8691 17 8 12.2868 3.7098 -3.0389 18 7 12.8513 3.9943 -0.9123 19 6 14.0869 4.4752 -1.2611 20 1 14.3611 4.5544 -2.3027 21 6 14.9867 4.8597 -0.2746 22 7 14.6532 4.7629 0.9929 23 14 16.6699 5.5157 -0.7499 24 1 16.5991 6.9901 -0.9115 25 1 17.6501 5.1808 0.3141 26 1 17.0985 4.8974 -2.0302 27 6 8.3820 0.7254 -2.5984 28 6 3.1141 -1.2463 -1.1409 29 6 2.0856 -1.2987 -0.0063 30 1 -0.5401 -0.9353 -0.0045 31 1 -0.5400 0.9353 0.0090 32 1 1.4026 2.1331 -0.1592 33 1 2.5987 1.4188 0.9541 34 1 3.7460 2.1436 -1.0802 35 1 2.5964 1.2316 -2.0882 36 1 4.4488 0.0000 0.0000 37 1 5.8863 1.7489 -1.4638 38 1 7.9334 2.5068 -4.4771 39 1 6.7764 3.2281 -3.2761 40 1 9.7975 3.5543 -3.3153 41 1 10.0812 3.8526 -0.9201 42 1 10.7382 2.1990 -0.8728 43 1 12.6052 3.9228 0.0233 44 1 15.2811 5.0317 1.6815 45 1 8.3800 0.1393 -1.6794 46 1 9.0632 0.3305 -3.3521 47 1 3.7460 -2.1336 -1.1001 48 1 2.5963 -1.2123 -2.0995 49 1 2.5986 -1.4233 0.9474 50 1 1.4022 -2.1325 -0.1660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690288697.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:48 Heat of formation + Delta-G solvation = -75.745089 kcal Electronic energy + Delta-G solvation = -27959.178687 eV Core-core repulsion = 23985.273494 eV Total energy + Delta-G solvation = -3973.905193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.53282 -40.32120 -39.72594 -38.52068 -36.13294 -35.41597 -34.11577 -33.30521 -33.01362 -31.93032 -28.59519 -27.69655 -26.69234 -26.08041 -24.19502 -23.81277 -23.00292 -21.26643 -21.04693 -20.30775 -19.88637 -19.27677 -18.27540 -17.83851 -17.12994 -16.85841 -16.43893 -16.18295 -16.10619 -15.82662 -15.73085 -15.57991 -15.19885 -15.08466 -14.78924 -14.43930 -14.34823 -14.12027 -13.63042 -13.52043 -13.36955 -13.30475 -13.21615 -13.04259 -12.87748 -12.62631 -12.48749 -12.40939 -12.35924 -12.12214 -11.95241 -11.58108 -11.52890 -11.48754 -11.44133 -11.09081 -10.76644 -10.33087 -10.04646 -10.01378 -9.87564 -9.29465 -8.46807 -5.95557 1.38170 1.39595 1.42178 1.54855 1.61725 2.05613 2.14727 2.29495 2.97063 3.20679 3.48814 3.57132 3.60159 3.64208 3.72546 3.81505 3.98531 4.10040 4.13796 4.16320 4.30931 4.33012 4.40764 4.48111 4.49358 4.58659 4.60086 4.64677 4.80893 4.83998 4.87559 4.88932 5.00750 5.05289 5.06849 5.09362 5.13749 5.16068 5.18965 5.24236 5.35682 5.41036 5.59064 5.80531 5.93876 6.02090 6.17605 6.44851 6.56109 6.60372 7.12745 7.26673 7.56511 8.11950 8.70506 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023471 B = 0.001650 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.652894 B =16963.811782 C =17570.055039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.083 4.083 4 C -0.102 4.102 5 C -0.099 4.099 6 C 0.516 3.484 7 O -0.585 6.585 8 N -0.698 5.698 9 C 0.125 3.875 10 H 0.087 0.913 11 C -0.133 4.133 12 C 0.061 3.939 13 H 0.092 0.908 14 N -0.672 5.672 15 C 0.066 3.934 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.139 4.139 28 C -0.094 4.094 29 C -0.083 4.083 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.119 0.881 37 H 0.415 0.585 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.347 0.653 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.060 0.940 48 H 0.052 0.948 49 H 0.084 0.916 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.138 -6.395 2.919 29.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.132 4.132 3 C -0.120 4.120 4 C -0.140 4.140 5 C -0.120 4.120 6 C 0.305 3.695 7 O -0.464 6.464 8 N -0.350 5.350 9 C 0.018 3.982 10 H 0.105 0.895 11 C -0.171 4.171 12 C -0.048 4.048 13 H 0.109 0.891 14 N -0.305 5.305 15 C -0.066 4.066 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.179 4.179 28 C -0.132 4.132 29 C -0.120 4.120 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.253 0.747 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.167 0.833 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.102 0.898 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -28.492 -7.536 1.688 29.520 hybrid contribution 0.606 1.110 0.686 1.439 sum -27.886 -6.426 2.374 28.715 Atomic orbital electron populations 1.23790 0.95146 1.02395 1.02572 1.22123 0.95366 0.96219 0.99501 1.20754 0.97376 0.94694 0.99157 1.21457 0.97209 0.95903 0.99417 1.21363 0.94143 0.98204 0.98334 1.21227 0.82095 0.80855 0.85365 1.90692 1.74623 1.37625 1.43479 1.45632 1.30337 1.25483 1.33552 1.21560 0.86922 0.98212 0.91482 0.89495 1.23501 0.97406 0.96381 0.99820 1.23219 0.87059 0.95802 0.98760 0.89077 1.60167 1.15990 1.39513 1.14847 1.21580 0.90862 1.00825 0.93373 1.20951 0.88231 0.82751 0.85692 1.90494 1.79855 1.60570 1.20186 1.41939 1.13624 1.56840 1.08632 1.19675 0.91849 1.40785 0.94214 0.90386 1.26025 1.03245 0.97314 0.94593 1.69666 1.38339 1.48148 0.99896 0.84932 0.76936 0.78573 0.77924 1.19509 1.19562 1.19926 1.23517 0.96157 0.96623 1.01595 1.21288 0.96678 0.96481 0.98732 1.20821 0.97242 0.95197 0.98771 0.88332 0.87746 0.90095 0.89375 0.89180 0.92411 0.86287 0.74744 0.88373 0.88672 0.83266 0.91089 0.88368 0.76951 0.91289 0.91753 0.90033 0.92146 0.92919 0.89808 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.04 13.99 67.79 0.95 -1.09 16 2 C -0.13 -1.37 5.36 -16.12 -0.09 -1.45 16 3 C -0.08 -0.62 6.00 29.96 0.18 -0.44 16 4 C -0.10 -0.88 5.13 30.52 0.16 -0.73 16 5 C -0.10 -1.20 2.43 -11.57 -0.03 -1.23 16 6 C 0.52 9.64 7.15 87.66 0.63 10.26 16 7 O -0.58 -16.55 15.54 -3.03 -0.05 -16.59 16 8 N -0.70 -10.17 5.13 -440.03 -2.26 -12.43 16 9 C 0.12 2.33 4.32 45.51 0.20 2.52 16 10 H 0.09 1.99 7.46 -2.39 -0.02 1.97 16 11 C -0.13 -2.18 7.40 31.12 0.23 -1.95 16 12 C 0.06 1.25 4.01 45.44 0.18 1.43 16 13 H 0.09 1.50 7.87 -2.39 -0.02 1.48 16 14 N -0.67 -19.96 6.19 -492.87 -3.05 -23.01 16 15 C 0.07 2.17 6.01 85.55 0.51 2.68 16 16 C 0.44 20.53 7.82 87.66 0.69 21.22 16 17 O -0.62 -34.53 15.78 -3.09 -0.05 -34.58 16 18 N -0.57 -29.20 5.29 -306.99 -1.62 -30.82 16 19 C -0.34 -19.05 9.68 84.04 0.81 -18.24 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 23 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 27 C -0.14 -3.07 7.68 31.12 0.24 -2.83 16 28 C -0.09 -1.37 4.54 30.66 0.14 -1.23 16 29 C -0.08 -0.90 6.03 30.11 0.18 -0.72 16 30 H 0.10 0.92 7.92 -2.91 -0.02 0.90 16 31 H 0.10 0.87 7.92 -2.91 -0.02 0.85 16 32 H 0.08 0.51 7.89 -2.38 -0.02 0.49 16 33 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.09 0.44 7.43 -2.39 -0.02 0.43 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.42 3.50 8.04 -92.71 -0.75 2.76 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.35 10.70 8.25 -89.70 -0.74 9.96 16 41 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 42 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.40 19.07 7.90 -92.70 -0.73 18.34 16 44 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 45 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.06 1.04 8.00 -2.39 -0.02 1.02 16 48 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 0.77 7.89 -2.39 -0.02 0.75 16 Total: -1.00 -73.23 406.48 -0.53 -73.76 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: -1.26 Total: 39.77 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 5.45 Total: 8.04 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -6.65 Total: -115.20 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -0.10 Total: -51.17 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -73.23 -0.53 -73.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690288697.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.986 kcal (2) G-P(sol) polarization free energy of solvation -73.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds