Wall clock time and date at job start Tue Mar 31 2020 18:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.51578 * 135.78814 * 2 1 4 4 C 1.53842 * 86.75913 * 154.87105 * 3 2 1 5 5 C 1.52999 * 113.65810 * 270.22310 * 4 3 2 6 6 C 1.50699 * 113.65614 * 139.27067 * 4 3 2 7 7 O 1.21277 * 119.99936 * 0.02562 * 6 4 3 8 8 N 1.34777 * 119.99556 * 179.97438 * 6 4 3 9 9 C 1.46504 * 119.99644 * 179.97438 * 8 6 4 10 10 C 1.52995 * 109.47289 * 180.02562 * 9 8 6 11 11 H 1.09004 * 110.64245 * 303.31032 * 10 9 8 12 12 C 1.54604 * 110.72334 * 66.45422 * 10 9 8 13 13 C 1.53991 * 105.14050 * 140.49299 * 12 10 9 14 14 N 1.47905 * 107.05809 * 1.22852 * 13 12 10 15 15 C 1.46894 * 111.00295 * 214.15199 * 14 13 12 16 16 C 1.50695 * 109.47705 * 176.63867 * 15 14 13 17 17 O 1.21293 * 119.99598 * 6.13247 * 16 15 14 18 18 N 1.34770 * 120.00499 * 186.14160 * 16 15 14 19 19 C 1.37094 * 120.00231 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00226 * 359.97438 * 19 18 16 21 21 C 1.38957 * 120.00171 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46644 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47126 * 300.00099 * 23 21 19 26 26 H 1.48495 * 109.47041 * 60.00543 * 23 21 19 27 27 C 1.48535 * 105.82048 * 334.66782 * 14 13 12 28 28 C 1.51588 * 135.77799 * 180.02562 * 2 1 3 29 29 H 1.08000 * 120.00141 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00269 * 180.02562 * 1 2 3 31 31 H 1.08999 * 113.66053 * 40.40783 * 3 2 1 32 32 H 1.08997 * 113.66657 * 269.34043 * 3 2 1 33 33 H 1.08994 * 109.47421 * 298.33447 * 5 4 3 34 34 H 1.09004 * 109.47045 * 58.33598 * 5 4 3 35 35 H 1.09000 * 109.46912 * 178.33558 * 5 4 3 36 36 H 0.97002 * 120.00488 * 0.02562 * 8 6 4 37 37 H 1.09004 * 109.46842 * 60.00268 * 9 8 6 38 38 H 1.08995 * 109.47522 * 300.00537 * 9 8 6 39 39 H 1.08996 * 110.30520 * 21.58122 * 12 10 9 40 40 H 1.08997 * 110.30761 * 259.41541 * 12 10 9 41 41 H 1.08993 * 109.92317 * 241.87814 * 13 12 10 42 42 H 1.09005 * 110.08057 * 120.66782 * 13 12 10 43 43 H 1.09010 * 109.46872 * 56.63525 * 15 14 13 44 44 H 1.09001 * 109.47040 * 296.64207 * 15 14 13 45 45 H 0.97003 * 120.00014 * 359.97438 * 18 16 15 46 46 H 0.97000 * 119.99605 * 180.02562 * 22 21 19 47 47 H 1.08996 * 110.66795 * 157.63752 * 27 14 13 48 48 H 1.08995 * 110.66937 * 280.77474 * 27 14 13 49 49 H 1.09006 * 113.66391 * 90.66845 * 28 2 1 50 50 H 1.08998 * 113.66731 * 319.59773 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0570 0.0000 4 6 3.3038 -0.0004 0.6523 5 6 3.2468 0.0006 2.1812 6 6 4.7130 -0.0003 0.1183 7 8 5.0341 0.7882 -0.7454 8 7 5.6166 -0.8758 0.6014 9 6 6.9865 -0.8760 0.0819 10 6 7.8013 -1.9583 0.7929 11 1 7.7828 -1.8066 1.8721 12 6 7.2758 -3.3661 0.4294 13 6 8.5356 -4.2378 0.2732 14 7 9.7001 -3.3734 0.5641 15 6 10.8535 -3.7473 -0.2651 16 6 11.9916 -2.7954 -0.0013 17 8 11.8957 -1.9641 0.8768 18 7 13.1157 -2.8674 -0.7411 19 6 14.1508 -2.0011 -0.5015 20 1 14.0653 -1.2605 0.2799 21 6 15.3101 -2.0757 -1.2639 22 7 15.4141 -2.9765 -2.2150 23 14 16.7202 -0.8947 -0.9378 24 1 17.8322 -1.1794 -1.8800 25 1 16.2520 0.5010 -1.1325 26 1 17.1971 -1.0667 0.4579 27 6 9.2588 -1.9864 0.2680 28 6 2.3963 -1.0572 -0.0005 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 2.1799 1.9069 0.6472 32 1 2.7180 1.3538 -0.9982 33 1 3.5897 0.9645 2.5570 34 1 2.2209 -0.1721 2.5067 35 1 3.8891 -0.7900 2.5692 36 1 5.3599 -1.5062 1.2925 37 1 7.4425 0.0980 0.2594 38 1 6.9691 -1.0794 -0.9887 39 1 6.7207 -3.3322 -0.5080 40 1 6.6450 -3.7528 1.2298 41 1 8.6006 -4.6173 -0.7465 42 1 8.5052 -5.0692 0.9775 43 1 10.5752 -3.6982 -1.3179 44 1 11.1644 -4.7625 -0.0185 45 1 13.1925 -3.5324 -1.4432 46 1 16.2235 -3.0289 -2.7470 47 1 9.8746 -1.2641 0.8039 48 1 9.2851 -1.7951 -0.8047 49 1 2.7180 -1.3536 -0.9989 50 1 2.1797 -1.9075 0.6462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691157222.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:06 Heat of formation + Delta-G solvation = -28.402187 kcal Electronic energy + Delta-G solvation = -28498.226254 eV Core-core repulsion = 24526.374003 eV Total energy + Delta-G solvation = -3971.852251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.96344 -39.40540 -38.25922 -37.51932 -35.13376 -33.90765 -32.43921 -31.56886 -31.13728 -29.38125 -28.14036 -27.11365 -26.34188 -25.48340 -24.07814 -22.99460 -21.18307 -20.35321 -19.66346 -19.17986 -18.15118 -17.86747 -17.21190 -16.61341 -16.12808 -15.69681 -15.37568 -15.22913 -14.97519 -14.82601 -14.50678 -14.45320 -14.19527 -13.84978 -13.73759 -13.56535 -13.13543 -12.86340 -12.70551 -12.56732 -12.32140 -12.24745 -12.05250 -11.82204 -11.73493 -11.50492 -11.34491 -11.20635 -11.04393 -11.01430 -10.78660 -10.63365 -10.59564 -10.43339 -10.21257 -9.89437 -9.49688 -9.47216 -9.24013 -8.42666 -8.02930 -7.92706 -6.41620 -3.82422 1.80338 2.40169 2.97258 3.20440 3.26186 3.30568 3.90048 3.90154 4.03400 4.04717 4.10636 4.24428 4.47464 4.54042 4.59420 4.73968 4.78460 4.92692 5.13623 5.17010 5.20623 5.25149 5.25501 5.29930 5.30993 5.35344 5.46034 5.48256 5.53713 5.68017 5.70619 5.71336 5.73751 5.78049 5.79332 5.85142 5.92316 6.01192 6.08050 6.18195 6.27112 6.30834 6.49699 6.52208 7.16604 7.24338 7.29692 7.55146 8.02159 8.05919 8.61534 9.17936 9.54075 10.05746 10.76005 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023303 B = 0.001864 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.299037 B =15017.119198 C =15618.338839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.148 4.148 3 C -0.082 4.082 4 C -0.106 4.106 5 C -0.127 4.127 6 C 0.527 3.473 7 O -0.538 6.538 8 N -0.723 5.723 9 C 0.127 3.873 10 C -0.106 4.106 11 H 0.090 0.910 12 C -0.125 4.125 13 C 0.033 3.967 14 N -0.493 5.493 15 C 0.037 3.963 16 C 0.442 3.558 17 O -0.579 6.579 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.284 1.284 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.049 3.951 28 C -0.088 4.088 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.400 0.600 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.090 0.910 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.110 0.890 48 H 0.040 0.960 49 H 0.096 0.904 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.720 -0.553 4.664 28.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.119 4.119 4 C -0.109 4.109 5 C -0.184 4.184 6 C 0.313 3.687 7 O -0.414 6.414 8 N -0.375 5.375 9 C 0.004 3.996 10 C -0.125 4.125 11 H 0.108 0.892 12 C -0.163 4.163 13 C -0.096 4.096 14 N -0.217 5.217 15 C -0.095 4.095 16 C 0.227 3.773 17 O -0.463 6.463 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.210 1.210 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.079 4.079 28 C -0.125 4.125 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.234 0.766 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.128 0.872 48 H 0.059 0.941 49 H 0.114 0.886 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -27.158 0.472 5.025 27.623 hybrid contribution 0.578 -0.301 -0.938 1.142 sum -26.580 0.171 4.087 26.893 Atomic orbital electron populations 1.22881 0.93356 1.02235 1.02329 1.22774 0.93841 0.98012 1.00148 1.22252 0.91912 0.95506 1.02243 1.21973 0.91303 1.00345 0.97312 1.21582 1.02959 1.02865 0.90989 1.20273 0.86380 0.80153 0.81900 1.90711 1.80029 1.39154 1.31523 1.46021 1.11326 1.37770 1.42370 1.21398 0.80496 0.99577 0.98178 1.22370 0.95495 0.93544 1.01112 0.89214 1.22475 0.97388 0.94926 1.01524 1.22909 0.90033 0.96786 0.99822 1.64530 1.03182 1.02269 1.51713 1.22083 0.92045 1.00129 0.95204 1.19701 0.84343 0.87662 0.85563 1.90484 1.81529 1.39768 1.34560 1.41856 1.13525 1.32499 1.32055 1.19652 0.92918 1.12778 1.17584 0.87941 1.25263 0.98988 0.97829 0.95822 1.69604 1.29138 1.34470 1.21076 0.85916 0.79881 0.80209 0.78205 1.20985 1.19910 1.19885 1.23270 0.93021 0.92457 0.99114 1.22286 0.93057 0.95791 1.01368 0.87540 0.87616 0.90308 0.87560 0.91458 0.91166 0.91771 0.76551 0.90916 0.91385 0.91464 0.91211 0.93959 0.90458 0.93454 0.89159 0.77493 0.91823 0.87232 0.94133 0.88601 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 14.71 29.02 0.43 -0.59 16 2 C -0.15 -1.05 6.60 -100.28 -0.66 -1.71 16 3 C -0.08 -0.68 6.98 -27.01 -0.19 -0.87 16 4 C -0.11 -0.83 1.27 -154.88 -0.20 -1.03 16 5 C -0.13 -0.75 8.98 37.16 0.33 -0.42 16 6 C 0.53 5.75 6.93 -10.99 -0.08 5.67 16 7 O -0.54 -8.16 15.90 5.56 0.09 -8.07 16 8 N -0.72 -6.69 5.29 -60.30 -0.32 -7.01 16 9 C 0.13 1.44 5.02 -4.04 -0.02 1.42 16 10 C -0.11 -1.21 3.12 -88.76 -0.28 -1.49 16 11 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 12 C -0.13 -1.23 6.20 -25.37 -0.16 -1.39 16 13 C 0.03 0.40 6.70 -2.75 -0.02 0.38 16 14 N -0.49 -8.07 5.11 -231.90 -1.18 -9.25 16 15 C 0.04 0.66 5.30 -4.98 -0.03 0.64 16 16 C 0.44 10.39 7.41 -10.99 -0.08 10.31 16 17 O -0.58 -15.41 13.87 5.55 0.08 -15.33 16 18 N -0.56 -14.27 5.29 -10.97 -0.06 -14.33 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 23 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.05 0.79 5.04 -1.90 -0.01 0.78 16 28 C -0.09 -0.60 7.18 -27.01 -0.19 -0.79 16 29 H 0.11 0.55 8.06 -52.49 -0.42 0.12 16 30 H 0.11 0.51 8.06 -52.48 -0.42 0.09 16 31 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.11 1.06 7.42 -51.93 -0.39 0.67 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.36 7.70 -51.93 -0.40 -0.04 16 35 H 0.06 0.31 7.04 -51.93 -0.37 -0.06 16 36 H 0.40 2.69 7.23 -40.82 -0.29 2.39 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 39 H 0.07 0.63 7.80 -51.93 -0.41 0.22 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.04 0.49 7.68 -51.93 -0.40 0.09 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.78 7.99 -51.92 -0.41 0.37 16 44 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 46 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 47 H 0.11 2.11 6.43 -51.93 -0.33 1.77 16 48 H 0.04 0.66 7.92 -51.93 -0.41 0.24 16 49 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 50 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 403.90 15.07 6.09 6.09 Total: -1.00 -32.86 403.90 -9.30 -42.17 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -8.31 Total: 10.56 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.39 Total: 2.92 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.84 Total: -54.43 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: 0.17 Total: -23.40 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.86 -9.30 -42.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691157222.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.763 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds