Wall clock time and date at job start Tue Mar 31 2020 18:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.51578 * 135.78814 * 2 1 4 4 C 1.53842 * 86.75913 * 154.87105 * 3 2 1 5 5 C 1.52999 * 113.65810 * 270.22310 * 4 3 2 6 6 C 1.50699 * 113.65614 * 139.27067 * 4 3 2 7 7 O 1.21277 * 119.99936 * 0.02562 * 6 4 3 8 8 N 1.34777 * 119.99556 * 179.97438 * 6 4 3 9 9 C 1.46504 * 119.99644 * 179.97438 * 8 6 4 10 10 C 1.52995 * 109.47289 * 180.02562 * 9 8 6 11 11 H 1.09004 * 110.64245 * 303.31032 * 10 9 8 12 12 C 1.54604 * 110.72334 * 66.45422 * 10 9 8 13 13 C 1.53991 * 105.14050 * 140.49299 * 12 10 9 14 14 N 1.47905 * 107.05809 * 1.22852 * 13 12 10 15 15 C 1.46894 * 111.00295 * 214.15199 * 14 13 12 16 16 C 1.50695 * 109.47705 * 176.63867 * 15 14 13 17 17 O 1.21293 * 119.99598 * 6.13247 * 16 15 14 18 18 N 1.34770 * 120.00499 * 186.14160 * 16 15 14 19 19 C 1.37094 * 120.00231 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00226 * 359.97438 * 19 18 16 21 21 C 1.38957 * 120.00171 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46644 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47126 * 300.00099 * 23 21 19 26 26 H 1.48495 * 109.47041 * 60.00543 * 23 21 19 27 27 C 1.48535 * 105.82048 * 334.66782 * 14 13 12 28 28 C 1.51588 * 135.77799 * 180.02562 * 2 1 3 29 29 H 1.08000 * 120.00141 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00269 * 180.02562 * 1 2 3 31 31 H 1.08999 * 113.66053 * 40.40783 * 3 2 1 32 32 H 1.08997 * 113.66657 * 269.34043 * 3 2 1 33 33 H 1.08994 * 109.47421 * 298.33447 * 5 4 3 34 34 H 1.09004 * 109.47045 * 58.33598 * 5 4 3 35 35 H 1.09000 * 109.46912 * 178.33558 * 5 4 3 36 36 H 0.97002 * 120.00488 * 0.02562 * 8 6 4 37 37 H 1.09004 * 109.46842 * 60.00268 * 9 8 6 38 38 H 1.08995 * 109.47522 * 300.00537 * 9 8 6 39 39 H 1.08996 * 110.30520 * 21.58122 * 12 10 9 40 40 H 1.08997 * 110.30761 * 259.41541 * 12 10 9 41 41 H 1.08993 * 109.92317 * 241.87814 * 13 12 10 42 42 H 1.09005 * 110.08057 * 120.66782 * 13 12 10 43 43 H 1.09010 * 109.46872 * 56.63525 * 15 14 13 44 44 H 1.09001 * 109.47040 * 296.64207 * 15 14 13 45 45 H 0.97003 * 120.00014 * 359.97438 * 18 16 15 46 46 H 0.97000 * 119.99605 * 180.02562 * 22 21 19 47 47 H 1.08996 * 110.66795 * 157.63752 * 27 14 13 48 48 H 1.08995 * 110.66937 * 280.77474 * 27 14 13 49 49 H 1.09006 * 113.66391 * 90.66845 * 28 2 1 50 50 H 1.08998 * 113.66731 * 319.59773 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0570 0.0000 4 6 3.3038 -0.0004 0.6523 5 6 3.2468 0.0006 2.1812 6 6 4.7130 -0.0003 0.1183 7 8 5.0341 0.7882 -0.7454 8 7 5.6166 -0.8758 0.6014 9 6 6.9865 -0.8760 0.0819 10 6 7.8013 -1.9583 0.7929 11 1 7.7828 -1.8066 1.8721 12 6 7.2758 -3.3661 0.4294 13 6 8.5356 -4.2378 0.2732 14 7 9.7001 -3.3734 0.5641 15 6 10.8535 -3.7473 -0.2651 16 6 11.9916 -2.7954 -0.0013 17 8 11.8957 -1.9641 0.8768 18 7 13.1157 -2.8674 -0.7411 19 6 14.1508 -2.0011 -0.5015 20 1 14.0653 -1.2605 0.2799 21 6 15.3101 -2.0757 -1.2639 22 7 15.4141 -2.9765 -2.2150 23 14 16.7202 -0.8947 -0.9378 24 1 17.8322 -1.1794 -1.8800 25 1 16.2520 0.5010 -1.1325 26 1 17.1971 -1.0667 0.4579 27 6 9.2588 -1.9864 0.2680 28 6 2.3963 -1.0572 -0.0005 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 2.1799 1.9069 0.6472 32 1 2.7180 1.3538 -0.9982 33 1 3.5897 0.9645 2.5570 34 1 2.2209 -0.1721 2.5067 35 1 3.8891 -0.7900 2.5692 36 1 5.3599 -1.5062 1.2925 37 1 7.4425 0.0980 0.2594 38 1 6.9691 -1.0794 -0.9887 39 1 6.7207 -3.3322 -0.5080 40 1 6.6450 -3.7528 1.2298 41 1 8.6006 -4.6173 -0.7465 42 1 8.5052 -5.0692 0.9775 43 1 10.5752 -3.6982 -1.3179 44 1 11.1644 -4.7625 -0.0185 45 1 13.1925 -3.5324 -1.4432 46 1 16.2235 -3.0289 -2.7470 47 1 9.8746 -1.2641 0.8039 48 1 9.2851 -1.7951 -0.8047 49 1 2.7180 -1.3536 -0.9989 50 1 2.1797 -1.9075 0.6462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691157222.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:05 Heat of formation + Delta-G solvation = -52.108349 kcal Electronic energy + Delta-G solvation = -28499.254230 eV Core-core repulsion = 24526.374003 eV Total energy + Delta-G solvation = -3972.880227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.71266 -40.73712 -39.46162 -38.75165 -36.26506 -35.84080 -33.51957 -33.14740 -32.22562 -30.39047 -28.71375 -28.47246 -27.02625 -26.74346 -25.63316 -23.79875 -22.36961 -21.30395 -21.00778 -20.49115 -19.88117 -18.69286 -17.98489 -17.89903 -17.28016 -16.84990 -16.62722 -16.38515 -16.21268 -16.01834 -15.63996 -15.49417 -15.29439 -15.11163 -14.80735 -14.51279 -14.27319 -14.09357 -13.76518 -13.54559 -13.41114 -13.19226 -13.15391 -12.93565 -12.88308 -12.86254 -12.44529 -12.39427 -12.38663 -12.15948 -12.07781 -11.90164 -11.83083 -11.51403 -11.46249 -11.15426 -10.75975 -10.26873 -10.16383 -10.01943 -10.00370 -9.32432 -8.47681 -5.96327 1.30723 1.38474 1.40284 1.51231 1.55477 2.03601 2.13908 2.27799 2.84925 3.19088 3.30501 3.32443 3.45835 3.57093 3.64749 3.72751 3.85994 3.95032 3.99900 4.27475 4.30578 4.32583 4.33532 4.44523 4.47093 4.58035 4.66770 4.67779 4.75885 4.78287 4.79722 4.81510 4.89084 4.94997 4.97385 5.00819 5.09819 5.19891 5.23267 5.27561 5.29041 5.39344 5.40703 5.56710 5.85058 5.96697 6.00063 6.11257 6.52340 6.59320 7.11620 7.20997 7.54741 8.10558 8.69518 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023303 B = 0.001864 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.299037 B =15017.119198 C =15618.338839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.162 4.162 3 C -0.092 4.092 4 C -0.101 4.101 5 C -0.124 4.124 6 C 0.524 3.476 7 O -0.588 6.588 8 N -0.707 5.707 9 C 0.136 3.864 10 C -0.088 4.088 11 H 0.096 0.904 12 C -0.114 4.114 13 C 0.030 3.970 14 N -0.512 5.512 15 C 0.049 3.951 16 C 0.438 3.562 17 O -0.614 6.614 18 N -0.574 5.574 19 C -0.334 4.334 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.271 1.271 27 C 0.047 3.953 28 C -0.080 4.080 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.417 0.583 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.111 0.889 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.066 0.934 48 H 0.030 0.970 49 H 0.085 0.915 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.885 -2.379 5.493 30.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C -0.129 4.129 4 C -0.104 4.104 5 C -0.181 4.181 6 C 0.311 3.689 7 O -0.468 6.468 8 N -0.359 5.359 9 C 0.011 3.989 10 C -0.108 4.108 11 H 0.114 0.886 12 C -0.152 4.152 13 C -0.097 4.097 14 N -0.236 5.236 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.500 6.500 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.194 1.194 25 H -0.199 1.199 26 H -0.196 1.196 27 C -0.082 4.082 28 C -0.117 4.117 29 H 0.131 0.869 30 H 0.140 0.860 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.254 0.746 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.129 0.871 45 H 0.229 0.771 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.048 0.952 49 H 0.104 0.896 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -29.351 -1.406 5.872 29.965 hybrid contribution 1.187 0.291 -1.192 1.708 sum -28.163 -1.115 4.680 28.571 Atomic orbital electron populations 1.23140 0.92958 1.03364 1.00029 1.22709 0.94107 0.97242 1.02155 1.22229 0.93225 0.96359 1.01091 1.22024 0.88897 1.00856 0.98615 1.21608 1.04248 1.03142 0.89090 1.20913 0.87637 0.79275 0.81072 1.90691 1.81072 1.41198 1.33882 1.45840 1.10117 1.37689 1.42273 1.21143 0.81534 0.98477 0.97724 1.22172 0.92560 0.94994 1.01066 0.88611 1.22476 0.96769 0.92639 1.03316 1.23056 0.88976 0.96775 1.00889 1.64495 1.04356 1.02969 1.51795 1.21965 0.90633 0.99117 0.96554 1.20753 0.84915 0.87607 0.84137 1.90467 1.82306 1.41390 1.35884 1.41930 1.13873 1.32566 1.32736 1.19625 0.94713 1.13797 1.18220 0.90310 1.26036 1.00747 0.99210 0.95255 1.69666 1.29924 1.35201 1.21292 0.84996 0.77065 0.77995 0.78320 1.19425 1.19861 1.19632 1.23108 0.95278 0.91752 0.98015 1.22237 0.92153 0.96134 1.01154 0.86901 0.85968 0.90045 0.90108 0.92172 0.89740 0.90161 0.74574 0.93159 0.92380 0.90408 0.87941 0.93039 0.88834 0.91760 0.87059 0.77076 0.91304 0.91537 0.95158 0.89642 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 14.71 67.78 1.00 -0.50 16 2 C -0.16 -2.03 6.60 -15.98 -0.11 -2.13 16 3 C -0.09 -1.52 6.98 30.41 0.21 -1.31 16 4 C -0.10 -1.46 1.27 -52.42 -0.07 -1.53 16 5 C -0.12 -1.18 8.98 71.98 0.65 -0.53 16 6 C 0.52 11.31 6.93 87.66 0.61 11.92 16 7 O -0.59 -18.69 15.90 -3.02 -0.05 -18.74 16 8 N -0.71 -12.20 5.29 -463.07 -2.45 -14.65 16 9 C 0.14 3.07 5.02 86.38 0.43 3.50 16 10 C -0.09 -1.93 3.12 -9.59 -0.03 -1.96 16 11 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 12 C -0.11 -1.85 6.20 31.47 0.19 -1.66 16 13 C 0.03 0.64 6.70 86.44 0.58 1.22 16 14 N -0.51 -16.27 5.11 -887.59 -4.54 -20.81 16 15 C 0.05 1.72 5.30 85.56 0.45 2.17 16 16 C 0.44 21.19 7.41 87.66 0.65 21.84 16 17 O -0.61 -34.14 13.87 -3.07 -0.04 -34.18 16 18 N -0.57 -29.93 5.29 -307.00 -1.62 -31.55 16 19 C -0.33 -19.23 9.68 84.04 0.81 -18.42 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 22 N -0.92 -50.19 13.05 21.67 0.28 -49.91 16 23 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 27 C 0.05 1.53 5.04 86.65 0.44 1.96 16 28 C -0.08 -0.91 7.18 30.41 0.22 -0.69 16 29 H 0.11 0.91 8.06 -2.91 -0.02 0.88 16 30 H 0.12 0.77 8.06 -2.91 -0.02 0.74 16 31 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 32 H 0.08 1.74 7.42 -2.39 -0.02 1.72 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.60 7.70 -2.38 -0.02 0.59 16 35 H 0.08 0.50 7.04 -2.39 -0.02 0.48 16 36 H 0.42 4.38 7.23 -92.71 -0.67 3.71 16 37 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.06 1.45 8.07 -2.39 -0.02 1.43 16 39 H 0.08 1.16 7.80 -2.39 -0.02 1.14 16 40 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 1.03 7.68 -2.39 -0.02 1.01 16 42 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.06 2.05 7.99 -2.38 -0.02 2.03 16 44 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 45 H 0.40 19.62 7.90 -92.71 -0.73 18.89 16 46 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 47 H 0.07 2.73 6.43 -2.39 -0.02 2.72 16 48 H 0.03 1.02 7.92 -2.39 -0.02 1.00 16 49 H 0.09 1.16 8.09 -2.38 -0.02 1.14 16 50 H 0.11 0.71 8.10 -2.39 -0.02 0.69 16 Total: -1.00 -75.07 403.90 -0.33 -75.41 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: -0.46 Total: 35.18 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 6.51 Total: 13.67 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -8.32 Total: -116.92 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -0.09 Total: -52.92 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -75.07 -0.33 -75.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691157222.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.298 kcal (2) G-P(sol) polarization free energy of solvation -75.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds