Wall clock time and date at job start Tue Mar 31 2020 18:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.51585 * 135.78555 * 2 1 4 4 C 1.53834 * 86.75765 * 154.83806 * 3 2 1 5 5 C 1.53002 * 113.66080 * 270.21962 * 4 3 2 6 6 C 1.50700 * 113.66090 * 139.27078 * 4 3 2 7 7 O 1.21290 * 119.99538 * 1.66131 * 6 4 3 8 8 N 1.34769 * 120.00529 * 181.66607 * 6 4 3 9 9 C 1.46503 * 120.00159 * 180.02562 * 8 6 4 10 10 C 1.53008 * 109.46986 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.76544 * 51.79778 * 10 9 8 12 12 C 1.55135 * 110.70624 * 288.59761 * 10 9 8 13 13 C 1.54903 * 101.65451 * 205.96860 * 12 10 9 14 14 N 1.47842 * 104.79653 * 37.06399 * 13 12 10 15 15 C 1.46904 * 111.00132 * 213.63866 * 14 13 12 16 16 C 1.50697 * 109.46892 * 290.84315 * 15 14 13 17 17 O 1.21291 * 120.00763 * 359.72740 * 16 15 14 18 18 N 1.34784 * 119.99774 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99968 * 179.72830 * 18 16 15 20 20 H 1.08005 * 120.00127 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00107 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00272 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99631 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47423 * 89.99791 * 23 21 19 25 25 H 1.48505 * 109.46968 * 209.99733 * 23 21 19 26 26 H 1.48504 * 109.47133 * 329.99196 * 23 21 19 27 27 C 1.47441 * 108.57087 * 335.91051 * 14 13 12 28 28 C 1.51775 * 135.75092 * 179.87453 * 2 1 3 29 29 H 1.07997 * 120.00136 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00146 * 180.02562 * 1 2 3 31 31 H 1.08999 * 113.66280 * 40.36941 * 3 2 1 32 32 H 1.08997 * 113.66089 * 269.30686 * 3 2 1 33 33 H 1.08997 * 109.47411 * 298.33609 * 5 4 3 34 34 H 1.08997 * 109.46860 * 58.33715 * 5 4 3 35 35 H 1.09000 * 109.47492 * 178.33282 * 5 4 3 36 36 H 0.97005 * 120.00106 * 359.97438 * 8 6 4 37 37 H 1.08996 * 109.47085 * 59.99933 * 9 8 6 38 38 H 1.09004 * 109.46894 * 299.99491 * 9 8 6 39 39 H 1.09003 * 110.98641 * 324.05592 * 12 10 9 40 40 H 1.08993 * 110.99299 * 87.83227 * 12 10 9 41 41 H 1.09004 * 110.37198 * 278.23798 * 13 12 10 42 42 H 1.09001 * 110.37498 * 155.90117 * 13 12 10 43 43 H 1.09001 * 109.46900 * 170.84975 * 15 14 13 44 44 H 1.08993 * 109.47169 * 50.84696 * 15 14 13 45 45 H 0.97005 * 119.99846 * 359.72750 * 18 16 15 46 46 H 0.97000 * 119.99725 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.89007 * 120.39254 * 27 14 13 48 48 H 1.09001 * 109.89037 * 241.42357 * 27 14 13 49 49 H 1.08998 * 113.66676 * 90.72534 * 28 2 1 50 50 H 1.09008 * 113.72235 * 319.60969 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3034 0.0000 0.6530 5 6 3.2459 0.0016 2.1820 6 6 4.7129 -0.0001 0.1197 7 8 5.0425 0.8076 -0.7229 8 7 5.6072 -0.8977 0.5790 9 6 6.9775 -0.8974 0.0609 10 6 7.7809 -2.0065 0.7432 11 1 7.2578 -2.9604 0.6752 12 6 8.0695 -1.6435 2.2236 13 6 9.3628 -2.4509 2.4974 14 7 10.1317 -2.3710 1.2372 15 6 10.8931 -3.6059 1.0058 16 6 12.0035 -3.7087 2.0193 17 8 12.1498 -2.8366 2.8494 18 7 12.8373 -4.7675 2.0003 19 6 13.8510 -4.8584 2.9188 20 1 13.9817 -4.0813 3.6575 21 6 14.7103 -5.9502 2.8996 22 7 15.6822 -6.0371 3.7797 23 14 14.4846 -7.2938 1.6216 24 1 15.2776 -6.9633 0.4104 25 1 14.9488 -8.5898 2.1786 26 1 13.0480 -7.3967 1.2598 27 6 9.1929 -2.1137 0.1298 28 6 2.3971 -1.0591 0.0023 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 2.1795 1.9073 0.6466 32 1 2.7183 1.3535 -0.9983 33 1 3.5888 0.9657 2.5575 34 1 2.2200 -0.1710 2.5071 35 1 3.8880 -0.7888 2.5706 36 1 5.3437 -1.5435 1.2531 37 1 7.4432 0.0666 0.2657 38 1 6.9592 -1.0709 -1.0151 39 1 8.2460 -0.5737 2.3360 40 1 7.2579 -1.9734 2.8719 41 1 9.1207 -3.4882 2.7290 42 1 9.9257 -2.0002 3.3148 43 1 11.3178 -3.5881 0.0021 44 1 10.2301 -4.4653 1.1046 45 1 12.7201 -5.4653 1.3367 46 1 16.2823 -6.7991 3.7659 47 1 9.4532 -1.1792 -0.3674 48 1 9.2280 -2.9360 -0.5847 49 1 2.7193 -1.3575 -0.9953 50 1 2.1809 -1.9081 0.6509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691157223.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:10 Heat of formation + Delta-G solvation = -21.703702 kcal Electronic energy + Delta-G solvation = -28311.262302 eV Core-core repulsion = 24339.700519 eV Total energy + Delta-G solvation = -3971.561783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.04332 -39.53337 -38.36942 -37.70536 -35.23379 -33.93386 -32.49151 -31.74093 -31.47674 -29.51516 -28.20380 -27.42155 -26.40999 -25.47124 -23.94245 -23.04343 -21.11525 -20.79982 -19.70306 -19.36212 -18.33637 -18.22042 -17.32067 -16.73677 -15.97262 -15.94555 -15.63869 -15.11656 -14.94993 -14.90611 -14.75135 -14.61824 -14.11949 -13.92663 -13.69925 -13.46797 -13.20687 -12.94142 -12.80254 -12.64424 -12.58008 -12.33874 -12.28788 -12.10625 -11.87571 -11.72957 -11.43378 -11.32507 -11.26642 -11.08293 -10.95415 -10.71604 -10.69617 -10.59837 -10.00921 -9.97055 -9.55947 -9.55246 -9.36095 -8.57018 -8.17279 -7.98114 -6.30483 -3.81705 1.74823 2.29853 2.86084 3.01648 3.06578 3.14599 3.75324 3.82887 3.96019 3.97258 4.04221 4.10458 4.36714 4.39719 4.42130 4.56526 4.67008 4.86305 4.88389 5.10454 5.11244 5.18871 5.19523 5.24647 5.26465 5.28572 5.34738 5.39950 5.41870 5.47722 5.56809 5.61265 5.65972 5.68814 5.71850 5.72099 5.80124 5.90482 5.95889 5.99333 6.07355 6.20230 6.39627 6.43813 7.13609 7.15436 7.18621 7.59434 7.90696 8.15299 8.61397 8.96349 9.43431 9.85090 10.82769 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031539 B = 0.001714 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.589475 B =16327.882278 C =16438.187398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.149 4.149 3 C -0.081 4.081 4 C -0.106 4.106 5 C -0.127 4.127 6 C 0.529 3.471 7 O -0.538 6.538 8 N -0.725 5.725 9 C 0.131 3.869 10 C -0.124 4.124 11 H 0.081 0.919 12 C -0.125 4.125 13 C 0.052 3.948 14 N -0.504 5.504 15 C 0.038 3.962 16 C 0.453 3.547 17 O -0.558 6.558 18 N -0.593 5.593 19 C -0.304 4.304 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.051 3.949 28 C -0.089 4.089 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.400 0.600 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.049 0.951 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.081 0.919 48 H 0.056 0.944 49 H 0.095 0.905 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.857 7.042 -8.463 31.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.118 4.118 4 C -0.109 4.109 5 C -0.184 4.184 6 C 0.315 3.685 7 O -0.415 6.415 8 N -0.376 5.376 9 C 0.007 3.993 10 C -0.143 4.143 11 H 0.099 0.901 12 C -0.163 4.163 13 C -0.076 4.076 14 N -0.228 5.228 15 C -0.094 4.094 16 C 0.239 3.761 17 O -0.439 6.439 18 N -0.233 5.233 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.078 4.078 28 C -0.126 4.126 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.235 0.765 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.202 0.798 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.075 0.925 49 H 0.114 0.886 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -28.906 8.503 -8.384 31.276 hybrid contribution -0.595 -2.360 -0.706 2.535 sum -29.502 6.142 -9.090 31.475 Atomic orbital electron populations 1.22892 0.93365 1.02280 1.02154 1.22801 0.93836 0.97932 1.00292 1.22239 0.91902 0.95524 1.02176 1.21977 0.91214 1.00349 0.97387 1.21584 1.03035 1.02897 0.90896 1.20281 0.86409 0.80283 0.81563 1.90708 1.79674 1.38670 1.32424 1.46021 1.11527 1.36022 1.44058 1.21375 0.80630 0.99135 0.98164 1.22663 0.96711 0.98392 0.96580 0.90087 1.22854 0.97596 1.01489 0.94351 1.23048 0.92284 0.98596 0.93641 1.63252 1.23795 1.34138 1.01652 1.22155 0.96076 0.91178 0.99997 1.19648 0.84892 0.83877 0.87713 1.90550 1.73433 1.39879 1.40066 1.42212 1.29105 1.20693 1.31314 1.19425 1.04739 1.08478 1.10604 0.86302 1.25029 0.95993 0.97732 0.97413 1.69622 1.16923 1.30892 1.34817 0.86677 0.78377 0.82365 0.81971 1.19616 1.20224 1.19609 1.22826 0.88892 1.02076 0.94014 1.22330 0.93119 0.95808 1.01333 0.87503 0.87593 0.90266 0.87617 0.91426 0.91120 0.91772 0.76525 0.90789 0.91330 0.90326 0.91143 0.94006 0.88625 0.89257 0.93325 0.79794 0.91654 0.90056 0.92505 0.88646 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 14.71 29.02 0.43 -0.49 16 2 C -0.15 -0.96 6.61 -100.18 -0.66 -1.62 16 3 C -0.08 -0.61 6.97 -27.01 -0.19 -0.79 16 4 C -0.11 -0.74 1.26 -154.88 -0.19 -0.94 16 5 C -0.13 -0.68 8.99 37.16 0.33 -0.34 16 6 C 0.53 5.07 6.92 -10.99 -0.08 4.99 16 7 O -0.54 -7.33 15.91 5.55 0.09 -7.24 16 8 N -0.72 -5.63 5.36 -60.29 -0.32 -5.96 16 9 C 0.13 1.16 4.97 -4.04 -0.02 1.14 16 10 C -0.12 -1.10 2.96 -88.80 -0.26 -1.37 16 11 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 12 C -0.12 -1.27 6.44 -24.60 -0.16 -1.43 16 13 C 0.05 0.75 5.75 -2.30 -0.01 0.74 16 14 N -0.50 -7.81 4.86 -232.69 -1.13 -8.94 16 15 C 0.04 0.62 5.05 -4.98 -0.03 0.60 16 16 C 0.45 10.24 7.57 -10.98 -0.08 10.16 16 17 O -0.56 -14.86 14.62 5.55 0.08 -14.78 16 18 N -0.59 -14.09 5.09 -10.96 -0.06 -14.15 16 19 C -0.30 -8.58 10.16 -14.93 -0.15 -8.74 16 20 H 0.12 3.84 7.39 -52.48 -0.39 3.46 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 23 Si 0.88 19.31 27.74 -169.99 -4.71 14.60 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 27 C 0.05 0.57 6.46 -2.84 -0.02 0.55 16 28 C -0.09 -0.53 7.19 -26.92 -0.19 -0.73 16 29 H 0.11 0.49 8.06 -52.49 -0.42 0.07 16 30 H 0.11 0.46 8.06 -52.49 -0.42 0.04 16 31 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.11 0.94 7.44 -51.93 -0.39 0.56 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.33 7.70 -51.93 -0.40 -0.07 16 35 H 0.06 0.27 7.12 -51.93 -0.37 -0.10 16 36 H 0.40 2.23 7.46 -40.82 -0.30 1.93 16 37 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.85 7.94 -51.93 -0.41 0.44 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.04 0.60 7.62 -51.93 -0.40 0.21 16 42 H 0.10 1.68 7.38 -51.93 -0.38 1.30 16 43 H 0.09 1.30 8.03 -51.93 -0.42 0.88 16 44 H 0.05 0.70 7.85 -51.93 -0.41 0.30 16 45 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 46 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.08 0.91 7.82 -51.93 -0.41 0.50 16 48 H 0.06 0.57 7.55 -51.93 -0.39 0.18 16 49 H 0.10 0.62 8.09 -51.93 -0.42 0.20 16 50 H 0.08 0.38 8.10 -51.92 -0.42 -0.04 16 LS Contribution 402.12 15.07 6.06 6.06 Total: -1.00 -34.56 402.12 -8.88 -43.44 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -8.28 Total: 9.19 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.38 Total: 2.77 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.74 Total: -54.04 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.17 Total: -22.02 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.56 -8.88 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691157223.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.738 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds