Wall clock time and date at job start Tue Mar 31 2020 18:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.51585 * 135.78555 * 2 1 4 4 C 1.53834 * 86.75765 * 154.83806 * 3 2 1 5 5 C 1.53002 * 113.66080 * 270.21962 * 4 3 2 6 6 C 1.50700 * 113.66090 * 139.27078 * 4 3 2 7 7 O 1.21290 * 119.99538 * 1.66131 * 6 4 3 8 8 N 1.34769 * 120.00529 * 181.66607 * 6 4 3 9 9 C 1.46503 * 120.00159 * 180.02562 * 8 6 4 10 10 C 1.53008 * 109.46986 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.76544 * 51.79778 * 10 9 8 12 12 C 1.55135 * 110.70624 * 288.59761 * 10 9 8 13 13 C 1.54903 * 101.65451 * 205.96860 * 12 10 9 14 14 N 1.47842 * 104.79653 * 37.06399 * 13 12 10 15 15 C 1.46904 * 111.00132 * 213.63866 * 14 13 12 16 16 C 1.50697 * 109.46892 * 290.84315 * 15 14 13 17 17 O 1.21291 * 120.00763 * 359.72740 * 16 15 14 18 18 N 1.34784 * 119.99774 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99968 * 179.72830 * 18 16 15 20 20 H 1.08005 * 120.00127 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00107 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00272 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99631 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47423 * 89.99791 * 23 21 19 25 25 H 1.48505 * 109.46968 * 209.99733 * 23 21 19 26 26 H 1.48504 * 109.47133 * 329.99196 * 23 21 19 27 27 C 1.47441 * 108.57087 * 335.91051 * 14 13 12 28 28 C 1.51775 * 135.75092 * 179.87453 * 2 1 3 29 29 H 1.07997 * 120.00136 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00146 * 180.02562 * 1 2 3 31 31 H 1.08999 * 113.66280 * 40.36941 * 3 2 1 32 32 H 1.08997 * 113.66089 * 269.30686 * 3 2 1 33 33 H 1.08997 * 109.47411 * 298.33609 * 5 4 3 34 34 H 1.08997 * 109.46860 * 58.33715 * 5 4 3 35 35 H 1.09000 * 109.47492 * 178.33282 * 5 4 3 36 36 H 0.97005 * 120.00106 * 359.97438 * 8 6 4 37 37 H 1.08996 * 109.47085 * 59.99933 * 9 8 6 38 38 H 1.09004 * 109.46894 * 299.99491 * 9 8 6 39 39 H 1.09003 * 110.98641 * 324.05592 * 12 10 9 40 40 H 1.08993 * 110.99299 * 87.83227 * 12 10 9 41 41 H 1.09004 * 110.37198 * 278.23798 * 13 12 10 42 42 H 1.09001 * 110.37498 * 155.90117 * 13 12 10 43 43 H 1.09001 * 109.46900 * 170.84975 * 15 14 13 44 44 H 1.08993 * 109.47169 * 50.84696 * 15 14 13 45 45 H 0.97005 * 119.99846 * 359.72750 * 18 16 15 46 46 H 0.97000 * 119.99725 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.89007 * 120.39254 * 27 14 13 48 48 H 1.09001 * 109.89037 * 241.42357 * 27 14 13 49 49 H 1.08998 * 113.66676 * 90.72534 * 28 2 1 50 50 H 1.09008 * 113.72235 * 319.60969 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3034 0.0000 0.6530 5 6 3.2459 0.0016 2.1820 6 6 4.7129 -0.0001 0.1197 7 8 5.0425 0.8076 -0.7229 8 7 5.6072 -0.8977 0.5790 9 6 6.9775 -0.8974 0.0609 10 6 7.7809 -2.0065 0.7432 11 1 7.2578 -2.9604 0.6752 12 6 8.0695 -1.6435 2.2236 13 6 9.3628 -2.4509 2.4974 14 7 10.1317 -2.3710 1.2372 15 6 10.8931 -3.6059 1.0058 16 6 12.0035 -3.7087 2.0193 17 8 12.1498 -2.8366 2.8494 18 7 12.8373 -4.7675 2.0003 19 6 13.8510 -4.8584 2.9188 20 1 13.9817 -4.0813 3.6575 21 6 14.7103 -5.9502 2.8996 22 7 15.6822 -6.0371 3.7797 23 14 14.4846 -7.2938 1.6216 24 1 15.2776 -6.9633 0.4104 25 1 14.9488 -8.5898 2.1786 26 1 13.0480 -7.3967 1.2598 27 6 9.1929 -2.1137 0.1298 28 6 2.3971 -1.0591 0.0023 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 2.1795 1.9073 0.6466 32 1 2.7183 1.3535 -0.9983 33 1 3.5888 0.9657 2.5575 34 1 2.2200 -0.1710 2.5071 35 1 3.8880 -0.7888 2.5706 36 1 5.3437 -1.5435 1.2531 37 1 7.4432 0.0666 0.2657 38 1 6.9592 -1.0709 -1.0151 39 1 8.2460 -0.5737 2.3360 40 1 7.2579 -1.9734 2.8719 41 1 9.1207 -3.4882 2.7290 42 1 9.9257 -2.0002 3.3148 43 1 11.3178 -3.5881 0.0021 44 1 10.2301 -4.4653 1.1046 45 1 12.7201 -5.4653 1.3367 46 1 16.2823 -6.7991 3.7659 47 1 9.4532 -1.1792 -0.3674 48 1 9.2280 -2.9360 -0.5847 49 1 2.7193 -1.3575 -0.9953 50 1 2.1809 -1.9081 0.6509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691157223.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:09 Heat of formation + Delta-G solvation = -48.061497 kcal Electronic energy + Delta-G solvation = -28312.405261 eV Core-core repulsion = 24339.700519 eV Total energy + Delta-G solvation = -3972.704742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.68123 -40.76416 -39.55191 -38.76485 -36.23333 -35.82428 -33.77771 -33.28987 -32.24087 -30.44086 -28.84642 -28.55643 -26.97194 -26.61187 -25.45851 -23.73338 -22.24861 -21.58108 -21.23545 -20.40413 -20.21768 -18.69653 -18.02080 -17.81624 -17.34683 -16.92442 -16.62591 -16.34709 -16.14481 -15.90604 -15.59527 -15.36410 -15.20733 -14.97973 -14.61302 -14.55990 -14.45936 -14.33906 -14.08449 -13.68542 -13.39555 -13.23418 -13.15540 -13.04296 -12.87994 -12.84868 -12.42430 -12.38996 -12.30644 -12.10259 -11.97231 -11.89621 -11.79888 -11.64439 -11.48271 -11.15647 -10.73944 -10.37626 -10.23192 -10.10605 -10.00288 -9.16929 -8.40481 -6.01225 1.29953 1.30817 1.36301 1.44741 1.58299 1.98056 2.19200 2.23631 2.69521 3.15415 3.27066 3.32744 3.46233 3.57304 3.59017 3.62061 3.89388 3.94919 3.99692 4.19137 4.29933 4.34548 4.37283 4.43934 4.45339 4.54838 4.63971 4.67158 4.76940 4.78830 4.80734 4.85401 4.89278 4.95057 4.97453 5.01010 5.06418 5.19665 5.20542 5.27948 5.30705 5.45652 5.53916 5.56347 5.92238 5.99851 6.02835 6.15227 6.53971 6.61494 6.90007 7.23076 7.41475 7.99685 8.77344 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031539 B = 0.001714 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.589475 B =16327.882278 C =16438.187398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.163 4.163 3 C -0.090 4.090 4 C -0.102 4.102 5 C -0.124 4.124 6 C 0.526 3.474 7 O -0.585 6.585 8 N -0.712 5.712 9 C 0.137 3.863 10 C -0.104 4.104 11 H 0.107 0.893 12 C -0.114 4.114 13 C 0.049 3.951 14 N -0.536 5.536 15 C 0.050 3.950 16 C 0.450 3.550 17 O -0.608 6.608 18 N -0.593 5.593 19 C -0.328 4.328 20 H 0.053 0.947 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.230 1.230 27 C 0.049 3.951 28 C -0.081 4.081 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.414 0.586 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.118 0.882 44 H 0.082 0.918 45 H 0.389 0.611 46 H 0.279 0.721 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.096 4.435 -10.718 35.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C -0.127 4.127 4 C -0.105 4.105 5 C -0.181 4.181 6 C 0.313 3.687 7 O -0.466 6.466 8 N -0.363 5.363 9 C 0.013 3.987 10 C -0.123 4.123 11 H 0.125 0.875 12 C -0.152 4.152 13 C -0.078 4.078 14 N -0.260 5.260 15 C -0.081 4.081 16 C 0.238 3.762 17 O -0.492 6.492 18 N -0.236 5.236 19 C -0.457 4.457 20 H 0.071 0.929 21 C -0.214 4.214 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.183 1.183 25 H -0.200 1.200 26 H -0.153 1.153 27 C -0.079 4.079 28 C -0.118 4.118 29 H 0.131 0.869 30 H 0.139 0.861 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.252 0.748 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.136 0.864 44 H 0.100 0.900 45 H 0.225 0.775 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.099 0.901 49 H 0.106 0.894 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -32.182 5.885 -10.632 34.400 hybrid contribution 0.424 -1.382 0.087 1.448 sum -31.758 4.503 -10.546 33.764 Atomic orbital electron populations 1.23132 0.93066 1.03296 1.00225 1.22777 0.94108 0.97395 1.01982 1.22217 0.93115 0.96259 1.01157 1.22009 0.89373 1.00683 0.98428 1.21602 1.04072 1.03111 0.89359 1.20777 0.87474 0.79622 0.80831 1.90689 1.80626 1.40599 1.34638 1.45901 1.10804 1.35769 1.43851 1.21216 0.81023 0.98259 0.98227 1.22520 0.95603 0.99357 0.94863 0.87530 1.22782 0.96213 1.00179 0.95997 1.22936 0.93526 0.99021 0.92343 1.63094 1.25712 1.34010 1.03220 1.22075 0.94358 0.93063 0.98595 1.20983 0.85272 0.82238 0.87745 1.90537 1.74762 1.41536 1.42350 1.42036 1.28469 1.21958 1.31098 1.18992 1.07493 1.07928 1.11298 0.92874 1.26119 0.94671 1.00532 1.00083 1.69810 1.18190 1.32284 1.37382 0.85355 0.80822 0.77184 0.78078 1.18258 1.20040 1.15327 1.22876 0.89116 1.02835 0.93025 1.22285 0.92250 0.96035 1.01221 0.86931 0.86133 0.90171 0.89846 0.92162 0.90064 0.90238 0.74834 0.92639 0.91323 0.91472 0.88357 0.93705 0.93234 0.86387 0.89987 0.77533 0.91194 0.90409 0.90105 0.89392 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 14.71 67.79 1.00 -0.38 16 2 C -0.16 -1.82 6.61 -15.91 -0.11 -1.93 16 3 C -0.09 -1.32 6.97 30.41 0.21 -1.11 16 4 C -0.10 -1.27 1.26 -52.42 -0.07 -1.34 16 5 C -0.12 -1.04 8.99 71.98 0.65 -0.39 16 6 C 0.53 9.54 6.92 87.66 0.61 10.15 16 7 O -0.59 -16.12 15.91 -3.06 -0.05 -16.17 16 8 N -0.71 -9.41 5.36 -463.04 -2.48 -11.89 16 9 C 0.14 2.15 4.97 86.38 0.43 2.58 16 10 C -0.10 -1.51 2.96 -9.61 -0.03 -1.54 16 11 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 12 C -0.11 -2.09 6.44 31.98 0.21 -1.89 16 13 C 0.05 1.40 5.75 86.77 0.50 1.90 16 14 N -0.54 -15.76 4.86 -890.11 -4.33 -20.09 16 15 C 0.05 1.52 5.05 85.56 0.43 1.96 16 16 C 0.45 20.40 7.57 87.65 0.66 21.06 16 17 O -0.61 -34.05 14.62 -3.06 -0.04 -34.10 16 18 N -0.59 -28.00 5.09 -306.97 -1.56 -29.56 16 19 C -0.33 -19.32 10.16 84.04 0.85 -18.46 16 20 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 21 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 22 N -0.94 -56.65 13.96 21.66 0.30 -56.35 16 23 Si 0.97 38.59 27.74 68.60 1.90 40.49 16 24 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 25 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.23 -7.63 6.52 99.48 0.65 -6.99 16 27 C 0.05 0.96 6.46 86.65 0.56 1.52 16 28 C -0.08 -0.79 7.19 30.47 0.22 -0.58 16 29 H 0.11 0.81 8.06 -2.91 -0.02 0.79 16 30 H 0.12 0.69 8.06 -2.91 -0.02 0.66 16 31 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 32 H 0.08 1.58 7.44 -2.39 -0.02 1.56 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.54 7.70 -2.39 -0.02 0.52 16 35 H 0.08 0.41 7.12 -2.39 -0.02 0.40 16 36 H 0.41 3.12 7.46 -92.70 -0.69 2.43 16 37 H 0.06 1.11 8.00 -2.39 -0.02 1.09 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.41 7.94 -2.39 -0.02 1.39 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.04 1.22 7.62 -2.38 -0.02 1.21 16 42 H 0.05 1.85 7.38 -2.39 -0.02 1.83 16 43 H 0.12 2.93 8.03 -2.39 -0.02 2.91 16 44 H 0.08 1.99 7.85 -2.39 -0.02 1.97 16 45 H 0.39 15.07 5.76 -92.70 -0.53 14.53 16 46 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 47 H 0.08 1.59 7.82 -2.39 -0.02 1.57 16 48 H 0.08 1.23 7.55 -2.39 -0.02 1.21 16 49 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 50 H 0.10 0.59 8.10 -2.38 -0.02 0.57 16 Total: -1.00 -83.74 402.12 -0.01 -83.75 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: -0.34 Total: 32.77 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 6.59 Total: 11.15 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -8.07 Total: -117.89 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -0.09 Total: -50.27 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 1.90 Total: 40.49 kcal Total: -83.74 -0.01 -83.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691157223.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.685 kcal (2) G-P(sol) polarization free energy of solvation -83.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds