Wall clock time and date at job start Tue Mar 31 2020 18:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51574 * 135.78656 * 2 1 4 4 C 1.53831 * 86.76050 * 154.84293 * 3 2 1 5 5 C 1.53002 * 113.65728 * 270.22274 * 4 3 2 6 6 C 1.50699 * 113.66078 * 139.27186 * 4 3 2 7 7 O 1.21279 * 119.99922 * 1.66628 * 6 4 3 8 8 N 1.34782 * 120.00113 * 181.66454 * 6 4 3 9 9 C 1.46499 * 119.99942 * 179.97438 * 8 6 4 10 10 H 1.08998 * 109.49899 * 325.07756 * 9 8 6 11 11 C 1.53115 * 109.53277 * 85.17953 * 9 8 6 12 12 C 1.53118 * 109.15622 * 177.61372 * 11 9 8 13 13 C 1.53038 * 109.28289 * 302.34374 * 12 11 9 14 14 N 1.46847 * 109.52167 * 59.17738 * 13 12 11 15 15 C 1.46896 * 111.00191 * 174.16425 * 14 13 12 16 16 C 1.50700 * 109.46942 * 294.21188 * 15 14 13 17 17 O 1.21293 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00075 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00173 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99666 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00001 * 180.27893 * 19 18 16 22 22 N 1.31414 * 119.99893 * 359.72318 * 21 19 18 23 23 Si 1.86801 * 119.99957 * 179.72309 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99793 * 23 21 19 25 25 H 1.48504 * 109.46970 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47038 * 299.99770 * 23 21 19 27 27 C 1.46846 * 111.20043 * 298.26286 * 14 13 12 28 28 C 1.51777 * 135.74816 * 179.88471 * 2 1 3 29 29 H 1.08001 * 119.99687 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99834 * 179.97438 * 1 2 3 31 31 H 1.08999 * 113.66527 * 40.37496 * 3 2 1 32 32 H 1.09006 * 113.66698 * 269.31119 * 3 2 1 33 33 H 1.08993 * 109.47258 * 298.33036 * 5 4 3 34 34 H 1.09000 * 109.46981 * 58.33460 * 5 4 3 35 35 H 1.09003 * 109.47133 * 178.33043 * 5 4 3 36 36 H 0.97004 * 119.99496 * 0.02562 * 8 6 4 37 37 H 1.09001 * 109.52275 * 297.51451 * 11 9 8 38 38 H 1.08998 * 109.52411 * 57.65019 * 11 9 8 39 39 H 1.09000 * 109.50882 * 62.29017 * 12 11 9 40 40 H 1.09004 * 109.50314 * 182.36060 * 12 11 9 41 41 H 1.09006 * 109.45914 * 299.16864 * 13 12 11 42 42 H 1.08994 * 109.46274 * 179.19714 * 13 12 11 43 43 H 1.08994 * 109.47346 * 174.21494 * 15 14 13 44 44 H 1.08998 * 109.47279 * 54.21166 * 15 14 13 45 45 H 0.97000 * 120.00140 * 0.02562 * 18 16 15 46 46 H 0.97004 * 119.99542 * 180.02562 * 22 21 19 47 47 H 1.09006 * 109.46143 * 181.75446 * 27 14 13 48 48 H 1.08993 * 109.46424 * 301.72482 * 27 14 13 49 49 H 1.09001 * 113.66521 * 90.72399 * 28 2 1 50 50 H 1.09000 * 113.72044 * 319.60137 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0570 0.0000 4 6 3.3035 0.0000 0.6529 5 6 3.2460 0.0015 2.1818 6 6 4.7130 -0.0001 0.1195 7 8 5.0425 0.8076 -0.7230 8 7 5.6073 -0.8978 0.5788 9 6 6.9773 -0.8982 0.0598 10 1 6.9666 -0.6266 -0.9957 11 6 7.8205 0.1142 0.8399 12 6 9.2638 0.0641 0.3310 13 6 9.8050 -1.3590 0.4856 14 7 8.9649 -2.2893 -0.2793 15 6 9.5335 -3.6437 -0.2673 16 6 10.8454 -3.6443 -1.0088 17 8 11.2652 -2.6176 -1.4996 18 7 11.5523 -4.7858 -1.1268 19 6 12.7461 -4.7862 -1.8010 20 1 13.1198 -3.8720 -2.2379 21 6 13.4720 -5.9642 -1.9276 22 7 13.0169 -7.0767 -1.3965 23 14 15.0947 -5.9664 -2.8529 24 1 16.0413 -5.0307 -2.1944 25 1 15.6674 -7.3366 -2.8444 26 1 14.8658 -5.5337 -4.2549 27 6 7.5847 -2.2935 0.2223 28 6 2.3972 -1.0591 0.0021 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 2.1797 1.9072 0.6467 32 1 2.7184 1.3535 -0.9983 33 1 3.5889 0.9656 2.5573 34 1 2.2201 -0.1711 2.5070 35 1 3.8882 -0.7890 2.5704 36 1 5.3435 -1.5441 1.2524 37 1 7.4166 1.1157 0.6916 38 1 7.7986 -0.1341 1.9009 39 1 9.2893 0.3510 -0.7203 40 1 9.8782 0.7528 0.9110 41 1 9.7922 -1.6400 1.5387 42 1 10.8277 -1.4012 0.1109 43 1 8.8418 -4.3325 -0.7522 44 1 9.6982 -3.9594 0.7629 45 1 11.2164 -5.6070 -0.7347 46 1 13.5239 -7.8990 -1.4846 47 1 6.9948 -3.0146 -0.3436 48 1 7.5823 -2.5701 1.2765 49 1 2.7194 -1.3574 -0.9955 50 1 2.1809 -1.9081 0.6506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692150817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:09 Heat of formation + Delta-G solvation = -29.573121 kcal Electronic energy + Delta-G solvation = -28949.220596 eV Core-core repulsion = 24977.317570 eV Total energy + Delta-G solvation = -3971.903026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.99118 -39.39480 -38.24845 -37.33274 -34.82645 -33.84642 -32.73374 -31.86936 -31.19545 -29.55636 -28.08334 -27.43895 -26.30524 -24.70701 -24.19301 -22.83485 -22.10066 -20.23208 -19.51015 -19.16838 -18.12480 -17.87146 -17.18985 -16.46631 -15.99333 -15.58830 -15.38021 -14.96699 -14.88434 -14.69997 -14.59674 -14.35269 -14.00906 -13.89483 -13.73560 -13.44206 -13.25597 -13.16683 -12.82917 -12.54756 -12.47398 -12.23971 -12.06627 -11.79039 -11.53492 -11.45148 -11.35998 -11.24758 -11.04008 -10.79613 -10.60987 -10.58810 -10.44892 -10.41639 -10.21099 -9.83273 -9.47386 -9.44851 -9.16846 -8.44543 -7.98070 -7.86644 -6.41555 -3.82266 1.83037 2.43658 2.91752 3.20414 3.26070 3.30671 3.90037 3.91836 4.01125 4.07909 4.13199 4.25841 4.50047 4.57063 4.78909 4.83514 4.94778 5.05654 5.13675 5.19630 5.24945 5.28076 5.30733 5.33654 5.36592 5.38253 5.49067 5.55206 5.58699 5.63395 5.71581 5.72912 5.80321 5.80824 5.90990 6.00168 6.03734 6.08263 6.12421 6.25762 6.33975 6.48620 6.52561 6.56741 7.24372 7.34671 7.38704 7.55396 8.06441 8.06617 8.61997 9.18340 9.54470 10.06374 10.76106 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025726 B = 0.001958 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.126554 B =14298.707017 C =14784.895750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.148 4.148 3 C -0.081 4.081 4 C -0.106 4.106 5 C -0.126 4.126 6 C 0.531 3.469 7 O -0.534 6.534 8 N -0.722 5.722 9 C 0.148 3.852 10 H 0.099 0.901 11 C -0.127 4.127 12 C -0.111 4.111 13 C 0.050 3.950 14 N -0.511 5.511 15 C 0.048 3.952 16 C 0.444 3.556 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.051 3.949 28 C -0.089 4.089 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.022 0.978 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.078 0.922 48 H 0.033 0.967 49 H 0.097 0.903 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.791 9.912 9.949 26.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.118 4.118 4 C -0.109 4.109 5 C -0.183 4.183 6 C 0.317 3.683 7 O -0.410 6.410 8 N -0.373 5.373 9 C 0.043 3.957 10 H 0.117 0.883 11 C -0.166 4.166 12 C -0.149 4.149 13 C -0.077 4.077 14 N -0.236 5.236 15 C -0.083 4.083 16 C 0.229 3.771 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.078 4.078 28 C -0.126 4.126 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.040 0.960 42 H 0.124 0.876 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.051 0.949 49 H 0.115 0.885 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.157 11.147 8.514 26.224 hybrid contribution 0.470 -1.366 1.041 1.780 sum -21.687 9.781 9.554 25.638 Atomic orbital electron populations 1.22881 0.93365 1.02221 1.02373 1.22822 0.93844 0.98004 1.00104 1.22239 0.91912 0.95449 1.02233 1.21978 0.91356 1.00357 0.97256 1.21571 1.02924 1.02737 0.91062 1.20238 0.86185 0.80442 0.81469 1.90713 1.79622 1.38443 1.32203 1.46047 1.11426 1.35937 1.43913 1.20970 0.79548 0.95080 1.00079 0.88308 1.21962 0.96018 0.99457 0.99155 1.21504 0.94349 0.96524 1.02521 1.22324 0.99867 0.91385 0.94151 1.61380 1.00244 1.07325 1.54605 1.21831 0.97021 0.90110 0.99356 1.19706 0.86450 0.84925 0.86035 1.90493 1.71282 1.32195 1.51983 1.41857 1.19857 1.09156 1.49208 1.19651 0.96227 0.96672 1.30259 0.87943 1.25256 0.99961 0.94785 0.97944 1.69607 1.39783 0.99836 1.45165 0.85918 0.81297 0.77093 0.79913 1.19933 1.21009 1.19888 1.22251 0.91171 0.96181 0.98174 1.22337 0.93022 0.95743 1.01489 0.87566 0.87610 0.90367 0.87540 0.91566 0.91189 0.91831 0.76866 0.91597 0.92406 0.90598 0.91455 0.96004 0.87563 0.89326 0.93438 0.77517 0.91851 0.90375 0.94871 0.88480 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 14.71 29.01 0.43 -0.64 16 2 C -0.15 -1.09 6.60 -100.19 -0.66 -1.75 16 3 C -0.08 -0.68 6.97 -27.02 -0.19 -0.87 16 4 C -0.11 -0.85 1.26 -154.88 -0.19 -1.04 16 5 C -0.13 -0.74 8.99 37.16 0.33 -0.40 16 6 C 0.53 5.85 6.89 -10.98 -0.08 5.77 16 7 O -0.53 -8.11 15.57 5.56 0.09 -8.03 16 8 N -0.72 -6.93 4.97 -53.73 -0.27 -7.19 16 9 C 0.15 1.80 2.62 -67.85 -0.18 1.63 16 10 H 0.10 1.50 7.58 -51.93 -0.39 1.11 16 11 C -0.13 -1.55 5.58 -26.61 -0.15 -1.70 16 12 C -0.11 -1.54 6.09 -26.65 -0.16 -1.70 16 13 C 0.05 0.81 5.11 -3.83 -0.02 0.79 16 14 N -0.51 -8.38 4.40 -236.12 -1.04 -9.42 16 15 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 16 C 0.44 10.33 7.46 -10.98 -0.08 10.24 16 17 O -0.58 -15.31 13.90 5.55 0.08 -15.23 16 18 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 23 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.05 0.63 4.93 -3.83 -0.02 0.62 16 28 C -0.09 -0.63 7.19 -26.92 -0.19 -0.83 16 29 H 0.11 0.57 8.06 -52.49 -0.42 0.14 16 30 H 0.11 0.55 8.06 -52.48 -0.42 0.12 16 31 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.11 1.07 7.45 -51.93 -0.39 0.69 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.36 7.70 -51.93 -0.40 -0.04 16 35 H 0.06 0.30 7.12 -51.93 -0.37 -0.07 16 36 H 0.40 2.73 7.59 -40.82 -0.31 2.42 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.11 2.10 5.78 -51.93 -0.30 1.80 16 43 H 0.09 1.40 7.99 -51.93 -0.41 0.98 16 44 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 45 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 46 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.08 0.91 8.02 -51.93 -0.42 0.49 16 48 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 50 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 LS Contribution 401.17 15.07 6.05 6.05 Total: -1.00 -32.41 401.17 -9.19 -41.61 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -8.31 Total: 11.08 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.43 Total: 3.01 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.64 Total: -54.49 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.16 Total: -23.25 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.41 -9.19 -41.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692150817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.034 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds