Wall clock time and date at job start Tue Mar 31 2020 18:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51574 * 135.78656 * 2 1 4 4 C 1.53831 * 86.76050 * 154.84293 * 3 2 1 5 5 C 1.53002 * 113.65728 * 270.22274 * 4 3 2 6 6 C 1.50699 * 113.66078 * 139.27186 * 4 3 2 7 7 O 1.21279 * 119.99922 * 1.66628 * 6 4 3 8 8 N 1.34782 * 120.00113 * 181.66454 * 6 4 3 9 9 C 1.46499 * 119.99942 * 179.97438 * 8 6 4 10 10 H 1.08998 * 109.49899 * 325.07756 * 9 8 6 11 11 C 1.53115 * 109.53277 * 85.17953 * 9 8 6 12 12 C 1.53118 * 109.15622 * 177.61372 * 11 9 8 13 13 C 1.53038 * 109.28289 * 302.34374 * 12 11 9 14 14 N 1.46847 * 109.52167 * 59.17738 * 13 12 11 15 15 C 1.46896 * 111.00191 * 174.16425 * 14 13 12 16 16 C 1.50700 * 109.46942 * 294.21188 * 15 14 13 17 17 O 1.21293 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00075 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00173 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99666 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00001 * 180.27893 * 19 18 16 22 22 N 1.31414 * 119.99893 * 359.72318 * 21 19 18 23 23 Si 1.86801 * 119.99957 * 179.72309 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99793 * 23 21 19 25 25 H 1.48504 * 109.46970 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47038 * 299.99770 * 23 21 19 27 27 C 1.46846 * 111.20043 * 298.26286 * 14 13 12 28 28 C 1.51777 * 135.74816 * 179.88471 * 2 1 3 29 29 H 1.08001 * 119.99687 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99834 * 179.97438 * 1 2 3 31 31 H 1.08999 * 113.66527 * 40.37496 * 3 2 1 32 32 H 1.09006 * 113.66698 * 269.31119 * 3 2 1 33 33 H 1.08993 * 109.47258 * 298.33036 * 5 4 3 34 34 H 1.09000 * 109.46981 * 58.33460 * 5 4 3 35 35 H 1.09003 * 109.47133 * 178.33043 * 5 4 3 36 36 H 0.97004 * 119.99496 * 0.02562 * 8 6 4 37 37 H 1.09001 * 109.52275 * 297.51451 * 11 9 8 38 38 H 1.08998 * 109.52411 * 57.65019 * 11 9 8 39 39 H 1.09000 * 109.50882 * 62.29017 * 12 11 9 40 40 H 1.09004 * 109.50314 * 182.36060 * 12 11 9 41 41 H 1.09006 * 109.45914 * 299.16864 * 13 12 11 42 42 H 1.08994 * 109.46274 * 179.19714 * 13 12 11 43 43 H 1.08994 * 109.47346 * 174.21494 * 15 14 13 44 44 H 1.08998 * 109.47279 * 54.21166 * 15 14 13 45 45 H 0.97000 * 120.00140 * 0.02562 * 18 16 15 46 46 H 0.97004 * 119.99542 * 180.02562 * 22 21 19 47 47 H 1.09006 * 109.46143 * 181.75446 * 27 14 13 48 48 H 1.08993 * 109.46424 * 301.72482 * 27 14 13 49 49 H 1.09001 * 113.66521 * 90.72399 * 28 2 1 50 50 H 1.09000 * 113.72044 * 319.60137 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0570 0.0000 4 6 3.3035 0.0000 0.6529 5 6 3.2460 0.0015 2.1818 6 6 4.7130 -0.0001 0.1195 7 8 5.0425 0.8076 -0.7230 8 7 5.6073 -0.8978 0.5788 9 6 6.9773 -0.8982 0.0598 10 1 6.9666 -0.6266 -0.9957 11 6 7.8205 0.1142 0.8399 12 6 9.2638 0.0641 0.3310 13 6 9.8050 -1.3590 0.4856 14 7 8.9649 -2.2893 -0.2793 15 6 9.5335 -3.6437 -0.2673 16 6 10.8454 -3.6443 -1.0088 17 8 11.2652 -2.6176 -1.4996 18 7 11.5523 -4.7858 -1.1268 19 6 12.7461 -4.7862 -1.8010 20 1 13.1198 -3.8720 -2.2379 21 6 13.4720 -5.9642 -1.9276 22 7 13.0169 -7.0767 -1.3965 23 14 15.0947 -5.9664 -2.8529 24 1 16.0413 -5.0307 -2.1944 25 1 15.6674 -7.3366 -2.8444 26 1 14.8658 -5.5337 -4.2549 27 6 7.5847 -2.2935 0.2223 28 6 2.3972 -1.0591 0.0021 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 2.1797 1.9072 0.6467 32 1 2.7184 1.3535 -0.9983 33 1 3.5889 0.9656 2.5573 34 1 2.2201 -0.1711 2.5070 35 1 3.8882 -0.7890 2.5704 36 1 5.3435 -1.5441 1.2524 37 1 7.4166 1.1157 0.6916 38 1 7.7986 -0.1341 1.9009 39 1 9.2893 0.3510 -0.7203 40 1 9.8782 0.7528 0.9110 41 1 9.7922 -1.6400 1.5387 42 1 10.8277 -1.4012 0.1109 43 1 8.8418 -4.3325 -0.7522 44 1 9.6982 -3.9594 0.7629 45 1 11.2164 -5.6070 -0.7347 46 1 13.5239 -7.8990 -1.4846 47 1 6.9948 -3.0146 -0.3436 48 1 7.5823 -2.5701 1.2765 49 1 2.7194 -1.3574 -0.9955 50 1 2.1809 -1.9081 0.6506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692150817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:08 Heat of formation + Delta-G solvation = -52.411380 kcal Electronic energy + Delta-G solvation = -28950.210937 eV Core-core repulsion = 24977.317570 eV Total energy + Delta-G solvation = -3972.893368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.77650 -40.67664 -39.54714 -38.52106 -36.14484 -35.60765 -33.89906 -33.19731 -32.49676 -30.55247 -28.94703 -28.55692 -26.89869 -26.50471 -25.11156 -24.06188 -23.14305 -21.21000 -21.01284 -20.39000 -19.85352 -18.68978 -18.02793 -17.63484 -17.47622 -16.55972 -16.52020 -16.28771 -16.24414 -15.74438 -15.55427 -15.45452 -15.37870 -15.09938 -14.81254 -14.50857 -14.49465 -14.25552 -13.85408 -13.51375 -13.44729 -13.38708 -13.13809 -13.00389 -12.86036 -12.68897 -12.42283 -12.40682 -12.32168 -12.13075 -11.95291 -11.81841 -11.81621 -11.58061 -11.40098 -11.14982 -10.72013 -10.24639 -10.10552 -9.99754 -9.97991 -9.19832 -8.45234 -5.93378 1.30810 1.39955 1.41798 1.52346 1.58943 2.02344 2.07689 2.30879 2.87615 3.21819 3.33105 3.38704 3.47144 3.57890 3.69091 3.83935 3.94993 3.98306 4.05226 4.16933 4.30762 4.35646 4.43637 4.45350 4.54014 4.60313 4.61580 4.68431 4.71397 4.79416 4.79805 4.88335 4.91031 4.96044 4.99505 5.01936 5.04675 5.20599 5.24317 5.29697 5.35005 5.41951 5.45638 5.56864 5.89617 6.00406 6.09041 6.22352 6.55507 6.62947 7.14994 7.25416 7.58800 8.15263 8.71854 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025726 B = 0.001958 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.126554 B =14298.707017 C =14784.895750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.162 4.162 3 C -0.090 4.090 4 C -0.099 4.099 5 C -0.122 4.122 6 C 0.528 3.472 7 O -0.583 6.583 8 N -0.706 5.706 9 C 0.154 3.846 10 H 0.062 0.938 11 C -0.117 4.117 12 C -0.106 4.106 13 C 0.055 3.945 14 N -0.536 5.536 15 C 0.061 3.939 16 C 0.440 3.560 17 O -0.614 6.614 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.274 1.274 27 C 0.057 3.943 28 C -0.083 4.083 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.415 0.585 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.112 0.888 44 H 0.073 0.927 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.090 0.910 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.705 8.668 12.139 28.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C -0.127 4.127 4 C -0.102 4.102 5 C -0.179 4.179 6 C 0.315 3.685 7 O -0.463 6.463 8 N -0.358 5.358 9 C 0.049 3.951 10 H 0.080 0.920 11 C -0.155 4.155 12 C -0.144 4.144 13 C -0.073 4.073 14 N -0.262 5.262 15 C -0.070 4.070 16 C 0.227 3.773 17 O -0.500 6.500 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.200 1.200 27 C -0.071 4.071 28 C -0.120 4.120 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.253 0.747 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.081 0.919 43 H 0.130 0.870 44 H 0.091 0.909 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.108 0.892 48 H 0.082 0.918 49 H 0.101 0.899 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.107 9.866 10.747 28.178 hybrid contribution 0.992 -0.903 0.329 1.380 sum -23.115 8.964 11.076 27.154 Atomic orbital electron populations 1.23139 0.92984 1.03334 1.00104 1.22764 0.94117 0.97277 1.02076 1.22208 0.93094 0.96324 1.01087 1.22024 0.88895 1.00590 0.98733 1.21595 1.04177 1.03234 0.88907 1.20862 0.87385 0.79608 0.80616 1.90698 1.80631 1.40488 1.34459 1.45836 1.10124 1.35961 1.43835 1.20696 0.80956 0.95236 0.98256 0.92008 1.21858 0.94328 0.99027 1.00320 1.21439 0.96057 0.95690 1.01215 1.22170 0.97749 0.92524 0.94857 1.61270 1.02095 1.06688 1.56137 1.21694 0.93934 0.91446 0.99879 1.20808 0.87846 0.83617 0.84992 1.90477 1.72690 1.33497 1.53382 1.41916 1.19658 1.09970 1.49634 1.19598 0.98092 0.96378 1.32065 0.90465 1.25995 1.02776 0.94139 0.98328 1.69663 1.40830 1.00153 1.45430 0.85020 0.77433 0.77654 0.78417 1.19752 1.19449 1.19952 1.22263 0.88591 0.96258 0.99987 1.22292 0.92418 0.96209 1.01121 0.86801 0.86122 0.89857 0.90189 0.91933 0.89915 0.90125 0.74697 0.92519 0.89938 0.93410 0.89985 0.93903 0.91912 0.87025 0.90872 0.76976 0.91344 0.89196 0.91819 0.89893 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 14.71 67.78 1.00 -0.60 16 2 C -0.16 -2.12 6.60 -15.92 -0.11 -2.23 16 3 C -0.09 -1.49 6.97 30.41 0.21 -1.28 16 4 C -0.10 -1.44 1.26 -52.42 -0.07 -1.50 16 5 C -0.12 -1.08 8.99 71.98 0.65 -0.43 16 6 C 0.53 11.32 6.89 87.66 0.60 11.93 16 7 O -0.58 -18.44 15.57 -3.02 -0.05 -18.49 16 8 N -0.71 -12.16 4.97 -442.28 -2.20 -14.36 16 9 C 0.15 3.59 2.62 45.04 0.12 3.71 16 10 H 0.06 1.94 7.58 -2.39 -0.02 1.92 16 11 C -0.12 -2.69 5.58 30.67 0.17 -2.52 16 12 C -0.11 -2.95 6.09 30.65 0.19 -2.76 16 13 C 0.05 1.74 5.11 86.33 0.44 2.18 16 14 N -0.54 -17.05 4.40 -900.94 -3.96 -21.01 16 15 C 0.06 2.05 5.45 85.56 0.47 2.52 16 16 C 0.44 20.81 7.46 87.66 0.65 21.46 16 17 O -0.61 -34.03 13.90 -3.07 -0.04 -34.07 16 18 N -0.57 -29.27 5.29 -306.98 -1.62 -30.89 16 19 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 20 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 21 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 22 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 23 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 C 0.06 1.26 4.93 86.33 0.43 1.69 16 28 C -0.08 -1.03 7.19 30.47 0.22 -0.81 16 29 H 0.11 0.96 8.06 -2.91 -0.02 0.93 16 30 H 0.12 0.87 8.06 -2.91 -0.02 0.84 16 31 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 32 H 0.08 1.74 7.45 -2.38 -0.02 1.72 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 0.57 7.70 -2.39 -0.02 0.55 16 35 H 0.08 0.44 7.12 -2.39 -0.02 0.42 16 36 H 0.42 4.20 7.59 -92.71 -0.70 3.49 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.06 2.57 5.78 -2.39 -0.01 2.56 16 43 H 0.11 3.24 7.99 -2.39 -0.02 3.22 16 44 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 45 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 46 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 47 H 0.09 1.81 8.02 -2.38 -0.02 1.79 16 48 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 50 H 0.11 0.81 8.10 -2.39 -0.02 0.80 16 Total: -1.00 -74.14 401.17 0.20 -73.94 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.49 Total: 35.73 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 6.25 Total: 13.09 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -7.50 Total: -115.38 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -0.09 Total: -52.56 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -74.14 0.20 -73.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692150817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.531 kcal (2) G-P(sol) polarization free energy of solvation -74.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds