Wall clock time and date at job start Tue Mar 31 2020 19:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38625 * 120.75327 * 2 1 4 4 C 1.38570 * 119.35301 * 180.02562 * 3 2 1 5 5 C 1.50693 * 119.54967 * 180.02562 * 4 3 2 6 6 N 1.31524 * 120.89871 * 359.74141 * 4 3 2 7 7 C 1.32716 * 121.64178 * 0.53247 * 6 4 3 8 8 C 1.48174 * 119.71997 * 179.74884 * 7 6 4 9 9 O 1.21518 * 119.99792 * 173.89989 * 8 7 6 10 10 N 1.34775 * 120.00016 * 353.62693 * 8 7 6 11 11 C 1.46498 * 119.99766 * 354.62483 * 10 8 7 12 12 C 1.46495 * 119.99921 * 174.63177 * 10 8 7 13 13 C 1.52997 * 109.47648 * 89.99822 * 12 10 8 14 14 O 1.42897 * 109.47318 * 64.99562 * 13 12 10 15 15 C 1.42892 * 114.00248 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47607 * 180.02562 * 15 14 13 17 17 N 1.46504 * 109.46942 * 65.00166 * 16 15 14 18 18 C 1.46503 * 120.00081 * 270.00372 * 17 16 15 19 19 C 1.36939 * 119.99902 * 90.00251 * 17 16 15 20 20 H 1.07993 * 119.99681 * 22.44545 * 19 17 16 21 21 C 1.38812 * 120.00077 * 202.44847 * 19 17 16 22 22 N 1.31620 * 119.99847 * 11.59701 * 21 19 17 23 23 Si 1.86790 * 120.00092 * 191.60319 * 21 19 17 24 24 H 1.48504 * 109.47069 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47396 * 119.99917 * 23 21 19 26 26 H 1.48506 * 109.47006 * 239.99768 * 23 21 19 27 27 C 1.38593 * 120.75828 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47126 * 269.97210 * 1 2 3 29 29 H 1.09004 * 109.46987 * 29.97977 * 1 2 3 30 30 H 1.09001 * 109.46516 * 149.97239 * 1 2 3 31 31 H 1.08003 * 120.32816 * 0.02562 * 3 2 1 32 32 H 1.09006 * 109.47331 * 90.00101 * 5 4 3 33 33 H 1.09001 * 109.47135 * 210.00120 * 5 4 3 34 34 H 1.09006 * 109.47135 * 330.00046 * 5 4 3 35 35 H 1.08999 * 109.46872 * 85.18213 * 11 10 8 36 36 H 1.09004 * 109.46812 * 205.17747 * 11 10 8 37 37 H 1.08998 * 109.47469 * 325.18120 * 11 10 8 38 38 H 1.09001 * 109.47246 * 210.00055 * 12 10 8 39 39 H 1.09003 * 109.47083 * 329.99221 * 12 10 8 40 40 H 1.09004 * 109.47552 * 185.00084 * 13 12 10 41 41 H 1.09005 * 109.46878 * 305.00066 * 13 12 10 42 42 H 1.08995 * 109.47765 * 300.00491 * 15 14 13 43 43 H 1.09005 * 109.47111 * 60.00405 * 15 14 13 44 44 H 1.08991 * 109.47707 * 185.00258 * 16 15 14 45 45 H 1.09000 * 109.47189 * 305.00937 * 16 15 14 46 46 H 1.09002 * 109.47049 * 94.73393 * 18 17 16 47 47 H 1.08997 * 109.47033 * 214.73519 * 18 17 16 48 48 H 1.09002 * 109.47106 * 334.73888 * 18 17 16 49 49 H 0.97003 * 120.00120 * 180.02562 * 22 21 19 50 50 H 1.07996 * 120.46769 * 359.96030 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1913 0.0000 4 6 3.6011 1.1574 -0.0005 5 6 4.3761 2.4498 0.0000 6 7 4.2488 0.0127 0.0040 7 6 3.6082 -1.1496 -0.0012 8 6 4.3807 -2.4141 -0.0013 9 8 3.8040 -3.4783 0.1058 10 7 5.7224 -2.3841 -0.1258 11 6 6.4063 -1.1135 -0.3788 12 6 6.4967 -3.6221 -0.0082 13 6 6.6393 -4.2676 -1.3880 14 8 7.4141 -3.4160 -2.2345 15 6 7.6085 -3.9291 -3.5539 16 6 8.4472 -2.9410 -4.3670 17 7 9.7889 -2.8460 -3.7865 18 6 10.0691 -1.8513 -2.7481 19 6 10.7812 -3.6871 -4.2146 20 1 10.7119 -4.1534 -5.1862 21 6 11.8761 -3.9401 -3.3997 22 7 11.8589 -3.5636 -2.1386 23 14 13.3739 -4.8149 -4.0928 24 1 13.1436 -5.1311 -5.5254 25 1 14.5639 -3.9361 -3.9645 26 1 13.6047 -6.0737 -3.3394 27 6 2.2158 -1.1910 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3632 -0.8898 -0.5143 31 1 1.6936 2.1367 0.0004 32 1 4.5634 2.7608 1.0279 33 1 5.3261 2.3041 -0.5143 34 1 3.7995 3.2195 -0.5131 35 1 6.5901 -0.6051 0.5677 36 1 7.3558 -1.3052 -0.8786 37 1 5.7819 -0.4849 -1.0136 38 1 7.4854 -3.3957 0.3910 39 1 5.9826 -4.3098 0.6634 40 1 7.1378 -5.2318 -1.2883 41 1 5.6513 -4.4128 -1.8250 42 1 8.1273 -4.8861 -3.4988 43 1 6.6408 -4.0677 -4.0361 44 1 8.5209 -3.2887 -5.3973 45 1 7.9728 -1.9598 -4.3477 46 1 9.9551 -2.3096 -1.7657 47 1 11.0893 -1.4848 -2.8618 48 1 9.3713 -1.0195 -2.8440 49 1 12.6241 -3.7401 -1.5692 50 1 1.6959 -2.1376 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692303701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:21 Heat of formation + Delta-G solvation = -8.606328 kcal Electronic energy + Delta-G solvation = -29556.286422 eV Core-core repulsion = 25585.292584 eV Total energy + Delta-G solvation = -3970.993838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.99223 -39.24056 -37.40182 -35.67568 -34.99129 -34.35150 -33.04304 -31.44616 -29.86937 -28.36019 -27.98782 -27.68776 -26.35165 -25.67656 -24.60105 -22.91068 -22.25481 -21.48705 -20.25831 -19.49747 -17.46839 -16.73389 -16.70215 -16.31568 -16.00060 -15.78379 -15.52376 -15.11045 -14.72528 -14.58220 -14.26083 -13.77939 -13.68580 -13.61818 -13.30319 -13.22815 -12.95456 -12.92149 -12.69925 -12.49174 -12.42717 -12.21554 -12.07208 -11.94899 -11.74738 -11.36225 -11.27605 -10.88453 -10.79538 -10.68800 -10.45063 -10.25599 -10.00741 -9.84786 -9.80413 -9.75321 -9.29523 -9.23226 -8.83541 -8.46886 -8.42828 -6.62501 -5.61819 -3.07276 0.46856 0.92531 2.65691 3.02061 3.41735 3.48831 3.50656 3.63906 3.86893 4.25348 4.34768 4.37212 4.57869 4.69005 4.78306 4.94688 5.06580 5.13874 5.26979 5.34151 5.38666 5.42268 5.43300 5.48789 5.50091 5.64354 5.69147 5.70514 5.77062 5.83135 5.92771 5.95072 6.00254 6.08677 6.18689 6.27591 6.27930 6.33684 6.50539 6.63371 6.69828 6.85041 6.98967 7.43918 7.54983 7.59925 7.86835 7.95381 8.01502 8.17222 8.50082 9.34967 9.98799 10.49289 11.42230 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.002510 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.817181 B =11152.446890 C =11702.564984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.155 4.155 4 C 0.124 3.876 5 C -0.104 4.104 6 N -0.450 5.450 7 C 0.093 3.907 8 C 0.564 3.436 9 O -0.544 6.544 10 N -0.580 5.580 11 C 0.091 3.909 12 C 0.119 3.881 13 C 0.049 3.951 14 O -0.365 6.365 15 C 0.045 3.955 16 C 0.154 3.846 17 N -0.596 5.596 18 C 0.175 3.825 19 C -0.253 4.253 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.292 1.292 27 C -0.122 4.122 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.041 0.959 42 H 0.046 0.954 43 H 0.021 0.979 44 H 0.056 0.944 45 H 0.042 0.958 46 H 0.033 0.967 47 H 0.035 0.965 48 H -0.007 1.007 49 H 0.249 0.751 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.716 10.894 6.298 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.056 4.056 3 C -0.175 4.175 4 C -0.015 4.015 5 C -0.162 4.162 6 N -0.164 5.164 7 C -0.045 4.045 8 C 0.350 3.650 9 O -0.422 6.422 10 N -0.310 5.310 11 C -0.051 4.051 12 C -0.003 4.003 13 C -0.029 4.029 14 O -0.284 6.284 15 C -0.035 4.035 16 C 0.026 3.974 17 N -0.319 5.319 18 C 0.031 3.969 19 C -0.383 4.383 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.549 5.549 23 Si 0.732 3.268 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.219 1.219 27 C -0.142 4.142 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.012 0.988 49 H 0.060 0.940 50 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.837 10.485 6.540 24.226 hybrid contribution -0.125 -0.910 -0.323 0.973 sum -20.962 9.576 6.218 23.870 Atomic orbital electron populations 1.20828 0.89744 1.03573 1.03063 1.20328 0.97047 0.92546 0.95687 1.22056 0.94863 0.98772 1.01831 1.21466 0.91195 0.94210 0.94655 1.20742 1.00613 0.91478 1.03333 1.68038 1.39535 0.97515 1.11283 1.21142 0.91573 0.92209 0.99550 1.17954 0.82238 0.87278 0.77506 1.90755 1.69646 1.30273 1.51539 1.47661 1.05380 1.10011 1.67949 1.22171 0.98232 0.83406 1.01295 1.21636 0.96565 0.85732 0.96353 1.22741 0.94745 0.94043 0.91410 1.87937 1.72430 1.44893 1.23148 1.23437 0.96833 0.99916 0.83312 1.20874 0.86051 0.95924 0.94566 1.43891 1.04586 1.38456 1.44972 1.20687 0.96221 0.87963 0.92041 1.19245 0.98710 1.21975 0.98337 0.91596 1.25011 0.99715 0.99954 0.95065 1.70103 1.29705 1.50812 1.04241 0.86235 0.83367 0.79019 0.78223 1.20461 1.21723 1.21891 1.21962 0.93776 0.99466 0.99035 0.90349 0.90848 0.90732 0.84533 0.90203 0.89891 0.90651 0.92873 0.90259 0.89510 0.88906 0.89069 0.92878 0.94055 0.93520 0.96076 0.92551 0.93923 0.94897 0.94609 0.98812 0.94032 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.06 36.01 0.36 -0.28 16 2 C -0.05 -0.42 5.91 -104.35 -0.62 -1.04 16 3 C -0.16 -1.26 9.45 -39.32 -0.37 -1.64 16 4 C 0.12 1.21 6.78 -82.60 -0.56 0.65 16 5 C -0.10 -0.71 10.17 36.00 0.37 -0.35 16 6 N -0.45 -5.58 6.08 -6.06 -0.04 -5.62 16 7 C 0.09 1.26 6.57 -83.01 -0.54 0.72 16 8 C 0.56 8.92 7.64 -12.18 -0.09 8.83 16 9 O -0.54 -9.67 15.98 5.35 0.09 -9.58 16 10 N -0.58 -9.01 2.84 -182.57 -0.52 -9.52 16 11 C 0.09 1.32 8.90 59.85 0.53 1.85 16 12 C 0.12 1.87 5.75 -4.05 -0.02 1.84 16 13 C 0.05 0.85 6.28 37.16 0.23 1.08 16 14 O -0.37 -7.38 8.81 -35.23 -0.31 -7.69 16 15 C 0.04 0.90 6.28 37.16 0.23 1.13 16 16 C 0.15 3.29 6.11 -4.04 -0.02 3.27 16 17 N -0.60 -15.41 2.89 -181.12 -0.52 -15.93 16 18 C 0.18 4.47 8.61 59.85 0.52 4.98 16 19 C -0.25 -7.06 9.67 -15.06 -0.15 -7.21 16 20 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 21 C 0.00 0.02 5.13 -17.43 -0.09 -0.07 16 22 N -0.90 -26.69 10.60 55.49 0.59 -26.10 16 23 Si 0.90 22.18 29.57 -169.99 -5.03 17.15 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C -0.12 -1.38 9.34 -39.05 -0.36 -1.75 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.31 8.10 -51.93 -0.42 -0.12 16 30 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 35 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 36 H 0.08 1.30 7.22 -51.93 -0.37 0.93 16 37 H 0.09 1.24 5.72 -51.93 -0.30 0.94 16 38 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 39 H 0.09 1.34 7.51 -51.93 -0.39 0.95 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 45 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 46 H 0.03 0.91 7.38 -51.93 -0.38 0.52 16 47 H 0.04 0.97 7.24 -51.93 -0.38 0.60 16 48 H -0.01 -0.15 7.84 -51.93 -0.41 -0.56 16 49 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 50 H 0.15 1.60 7.65 -52.49 -0.40 1.20 16 LS Contribution 408.77 15.07 6.16 6.16 Total: -1.00 -33.46 408.77 -8.65 -42.11 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -8.48 Total: -3.01 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -0.59 Total: 12.03 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.49 Total: -57.17 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.23 Total: -17.27 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.46 -8.65 -42.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692303701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.502 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds