Wall clock time and date at job start Tue Mar 31 2020 19:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38625 * 120.75327 * 2 1 4 4 C 1.38570 * 119.35301 * 180.02562 * 3 2 1 5 5 C 1.50693 * 119.54967 * 180.02562 * 4 3 2 6 6 N 1.31524 * 120.89871 * 359.74141 * 4 3 2 7 7 C 1.32716 * 121.64178 * 0.53247 * 6 4 3 8 8 C 1.48174 * 119.71997 * 179.74884 * 7 6 4 9 9 O 1.21518 * 119.99792 * 173.89989 * 8 7 6 10 10 N 1.34775 * 120.00016 * 353.62693 * 8 7 6 11 11 C 1.46498 * 119.99766 * 354.62483 * 10 8 7 12 12 C 1.46495 * 119.99921 * 174.63177 * 10 8 7 13 13 C 1.52997 * 109.47648 * 89.99822 * 12 10 8 14 14 O 1.42897 * 109.47318 * 64.99562 * 13 12 10 15 15 C 1.42892 * 114.00248 * 179.97438 * 14 13 12 16 16 C 1.53000 * 109.47607 * 180.02562 * 15 14 13 17 17 N 1.46504 * 109.46942 * 65.00166 * 16 15 14 18 18 C 1.46503 * 120.00081 * 270.00372 * 17 16 15 19 19 C 1.36939 * 119.99902 * 90.00251 * 17 16 15 20 20 H 1.07993 * 119.99681 * 22.44545 * 19 17 16 21 21 C 1.38812 * 120.00077 * 202.44847 * 19 17 16 22 22 N 1.31620 * 119.99847 * 11.59701 * 21 19 17 23 23 Si 1.86790 * 120.00092 * 191.60319 * 21 19 17 24 24 H 1.48504 * 109.47069 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47396 * 119.99917 * 23 21 19 26 26 H 1.48506 * 109.47006 * 239.99768 * 23 21 19 27 27 C 1.38593 * 120.75828 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47126 * 269.97210 * 1 2 3 29 29 H 1.09004 * 109.46987 * 29.97977 * 1 2 3 30 30 H 1.09001 * 109.46516 * 149.97239 * 1 2 3 31 31 H 1.08003 * 120.32816 * 0.02562 * 3 2 1 32 32 H 1.09006 * 109.47331 * 90.00101 * 5 4 3 33 33 H 1.09001 * 109.47135 * 210.00120 * 5 4 3 34 34 H 1.09006 * 109.47135 * 330.00046 * 5 4 3 35 35 H 1.08999 * 109.46872 * 85.18213 * 11 10 8 36 36 H 1.09004 * 109.46812 * 205.17747 * 11 10 8 37 37 H 1.08998 * 109.47469 * 325.18120 * 11 10 8 38 38 H 1.09001 * 109.47246 * 210.00055 * 12 10 8 39 39 H 1.09003 * 109.47083 * 329.99221 * 12 10 8 40 40 H 1.09004 * 109.47552 * 185.00084 * 13 12 10 41 41 H 1.09005 * 109.46878 * 305.00066 * 13 12 10 42 42 H 1.08995 * 109.47765 * 300.00491 * 15 14 13 43 43 H 1.09005 * 109.47111 * 60.00405 * 15 14 13 44 44 H 1.08991 * 109.47707 * 185.00258 * 16 15 14 45 45 H 1.09000 * 109.47189 * 305.00937 * 16 15 14 46 46 H 1.09002 * 109.47049 * 94.73393 * 18 17 16 47 47 H 1.08997 * 109.47033 * 214.73519 * 18 17 16 48 48 H 1.09002 * 109.47106 * 334.73888 * 18 17 16 49 49 H 0.97003 * 120.00120 * 180.02562 * 22 21 19 50 50 H 1.07996 * 120.46769 * 359.96030 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1913 0.0000 4 6 3.6011 1.1574 -0.0005 5 6 4.3761 2.4498 0.0000 6 7 4.2488 0.0127 0.0040 7 6 3.6082 -1.1496 -0.0012 8 6 4.3807 -2.4141 -0.0013 9 8 3.8040 -3.4783 0.1058 10 7 5.7224 -2.3841 -0.1258 11 6 6.4063 -1.1135 -0.3788 12 6 6.4967 -3.6221 -0.0082 13 6 6.6393 -4.2676 -1.3880 14 8 7.4141 -3.4160 -2.2345 15 6 7.6085 -3.9291 -3.5539 16 6 8.4472 -2.9410 -4.3670 17 7 9.7889 -2.8460 -3.7865 18 6 10.0691 -1.8513 -2.7481 19 6 10.7812 -3.6871 -4.2146 20 1 10.7119 -4.1534 -5.1862 21 6 11.8761 -3.9401 -3.3997 22 7 11.8589 -3.5636 -2.1386 23 14 13.3739 -4.8149 -4.0928 24 1 13.1436 -5.1311 -5.5254 25 1 14.5639 -3.9361 -3.9645 26 1 13.6047 -6.0737 -3.3394 27 6 2.2158 -1.1910 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3632 -0.8898 -0.5143 31 1 1.6936 2.1367 0.0004 32 1 4.5634 2.7608 1.0279 33 1 5.3261 2.3041 -0.5143 34 1 3.7995 3.2195 -0.5131 35 1 6.5901 -0.6051 0.5677 36 1 7.3558 -1.3052 -0.8786 37 1 5.7819 -0.4849 -1.0136 38 1 7.4854 -3.3957 0.3910 39 1 5.9826 -4.3098 0.6634 40 1 7.1378 -5.2318 -1.2883 41 1 5.6513 -4.4128 -1.8250 42 1 8.1273 -4.8861 -3.4988 43 1 6.6408 -4.0677 -4.0361 44 1 8.5209 -3.2887 -5.3973 45 1 7.9728 -1.9598 -4.3477 46 1 9.9551 -2.3096 -1.7657 47 1 11.0893 -1.4848 -2.8618 48 1 9.3713 -1.0195 -2.8440 49 1 12.6241 -3.7401 -1.5692 50 1 1.6959 -2.1376 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692303701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:20 Heat of formation + Delta-G solvation = -28.011249 kcal Electronic energy + Delta-G solvation = -29557.127883 eV Core-core repulsion = 25585.292584 eV Total energy + Delta-G solvation = -3971.835298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.90458 -40.33523 -38.97030 -37.27577 -36.52601 -35.12325 -33.87981 -33.39038 -31.32520 -29.65038 -29.04316 -28.30588 -27.79656 -27.52263 -25.70587 -24.78827 -23.44635 -22.18519 -22.12720 -20.60295 -18.79845 -18.44549 -17.80873 -17.38235 -17.23471 -16.93490 -16.80695 -16.75759 -16.26480 -15.69104 -15.45662 -15.27261 -15.04485 -14.81692 -14.40489 -14.17431 -14.13622 -13.94708 -13.81782 -13.53636 -13.43924 -13.15620 -13.08810 -13.04358 -13.00180 -12.85771 -12.72045 -12.61642 -12.52624 -12.41717 -12.25932 -11.97842 -11.77570 -11.71050 -11.41536 -10.61236 -10.51419 -10.43332 -10.17512 -10.05741 -9.66624 -8.71986 -7.76332 -5.24204 -0.38304 0.19613 1.46782 1.47863 1.58031 1.61328 1.87768 2.53436 2.75394 2.88613 2.98313 3.36097 3.54012 3.67747 3.76340 4.00549 4.03865 4.06340 4.08167 4.28977 4.36550 4.43416 4.50642 4.52281 4.53509 4.60589 4.63455 4.66425 4.74068 4.75502 4.79037 4.86244 4.88911 4.95979 4.98388 5.01829 5.11189 5.15800 5.23851 5.28921 5.29126 5.41575 5.46774 5.68569 5.70924 5.87489 6.24760 6.37390 6.43944 6.72066 7.02329 7.21125 7.93529 8.39043 9.26546 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.002510 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.817181 B =11152.446890 C =11702.564984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.047 4.047 3 C -0.142 4.142 4 C 0.112 3.888 5 C -0.102 4.102 6 N -0.471 5.471 7 C 0.063 3.937 8 C 0.560 3.440 9 O -0.573 6.573 10 N -0.585 5.585 11 C 0.106 3.894 12 C 0.123 3.877 13 C 0.053 3.947 14 O -0.381 6.381 15 C 0.052 3.948 16 C 0.151 3.849 17 N -0.612 5.612 18 C 0.195 3.805 19 C -0.260 4.260 20 H 0.071 0.929 21 C -0.055 4.055 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.266 1.266 25 H -0.292 1.292 26 H -0.295 1.295 27 C -0.131 4.131 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.175 0.825 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.052 0.948 41 H 0.041 0.959 42 H 0.022 0.978 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.005 0.995 47 H 0.009 0.991 48 H 0.020 0.980 49 H 0.245 0.755 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.675 12.703 5.628 27.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.054 4.054 3 C -0.161 4.161 4 C -0.027 4.027 5 C -0.159 4.159 6 N -0.185 5.185 7 C -0.073 4.073 8 C 0.348 3.652 9 O -0.453 6.453 10 N -0.314 5.314 11 C -0.037 4.037 12 C 0.001 3.999 13 C -0.025 4.025 14 O -0.300 6.300 15 C -0.027 4.027 16 C 0.024 3.976 17 N -0.335 5.335 18 C 0.050 3.950 19 C -0.391 4.391 20 H 0.089 0.911 21 C -0.250 4.250 22 N -0.581 5.581 23 Si 0.795 3.205 24 H -0.191 1.191 25 H -0.219 1.219 26 H -0.223 1.223 27 C -0.153 4.153 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.193 0.807 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.041 0.959 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.024 0.976 47 H 0.028 0.972 48 H 0.039 0.961 49 H 0.054 0.946 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.820 12.298 5.843 26.573 hybrid contribution 0.349 -1.373 -0.116 1.421 sum -22.471 10.925 5.727 25.634 Atomic orbital electron populations 1.20914 0.87205 1.04704 1.04156 1.20717 0.98768 0.91693 0.94266 1.22490 0.94271 1.00095 0.99279 1.22044 0.92503 0.94187 0.94004 1.20831 1.00201 0.90654 1.04209 1.67907 1.40387 0.97942 1.12248 1.20875 0.92137 0.91698 1.02632 1.18398 0.82149 0.88079 0.76582 1.90716 1.70111 1.31575 1.52926 1.47742 1.05618 1.10042 1.68009 1.22052 0.96964 0.83077 1.01561 1.21561 0.96628 0.86248 0.95487 1.22789 0.94167 0.93828 0.91751 1.87920 1.73012 1.45653 1.23457 1.23235 0.97734 0.98137 0.83620 1.21053 0.84257 0.97196 0.95074 1.44111 1.06179 1.38268 1.44946 1.20361 0.95313 0.88460 0.90852 1.19580 0.99374 1.21624 0.98504 0.91109 1.25776 1.02474 1.01290 0.95435 1.70275 1.30149 1.52291 1.05340 0.85215 0.79758 0.77459 0.78071 1.19060 1.21882 1.22250 1.22053 0.93121 1.00576 0.99513 0.89114 0.88685 0.90686 0.80711 0.89186 0.90979 0.87980 0.92008 0.92432 0.89126 0.89287 0.88223 0.93025 0.94077 0.95916 0.93174 0.91146 0.92346 0.97618 0.97238 0.96130 0.94580 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.06 71.24 0.72 -0.19 16 2 C -0.05 -0.71 5.91 -19.69 -0.12 -0.83 16 3 C -0.14 -1.85 9.45 22.44 0.21 -1.63 16 4 C 0.11 1.96 6.78 42.68 0.29 2.25 16 5 C -0.10 -1.13 10.17 71.23 0.72 -0.41 16 6 N -0.47 -11.43 6.08 -173.08 -1.05 -12.48 16 7 C 0.06 1.72 6.57 41.91 0.28 2.00 16 8 C 0.56 18.22 7.64 86.88 0.66 18.89 16 9 O -0.57 -21.05 15.98 -3.77 -0.06 -21.11 16 10 N -0.58 -18.65 2.84 -849.83 -2.41 -21.06 16 11 C 0.11 3.12 8.90 127.77 1.14 4.26 16 12 C 0.12 3.98 5.75 86.38 0.50 4.48 16 13 C 0.05 1.86 6.28 71.98 0.45 2.32 16 14 O -0.38 -15.53 8.81 -148.98 -1.31 -16.85 16 15 C 0.05 2.07 6.28 71.98 0.45 2.52 16 16 C 0.15 6.29 6.11 86.38 0.53 6.81 16 17 N -0.61 -31.60 2.89 -726.93 -2.10 -33.70 16 18 C 0.20 10.09 8.61 127.77 1.10 11.19 16 19 C -0.26 -14.54 9.67 84.03 0.81 -13.73 16 20 H 0.07 3.81 7.85 -2.91 -0.02 3.79 16 21 C -0.05 -3.13 5.13 84.86 0.44 -2.69 16 22 N -0.93 -56.39 10.60 21.65 0.23 -56.16 16 23 Si 0.97 45.96 29.57 68.60 2.03 47.99 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 C -0.13 -2.94 9.34 22.61 0.21 -2.73 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 0.38 8.10 -2.39 -0.02 0.36 16 30 H 0.07 0.62 8.10 -2.39 -0.02 0.60 16 31 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 32 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 0.59 8.08 -2.38 -0.02 0.57 16 35 H 0.06 1.68 8.02 -2.39 -0.02 1.67 16 36 H 0.06 1.94 7.22 -2.38 -0.02 1.92 16 37 H 0.09 2.62 5.72 -2.39 -0.01 2.61 16 38 H 0.09 2.92 8.07 -2.39 -0.02 2.90 16 39 H 0.10 3.02 7.51 -2.39 -0.02 3.01 16 40 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.07 2.72 8.03 -2.39 -0.02 2.71 16 45 H 0.06 2.25 7.86 -2.39 -0.02 2.23 16 46 H 0.01 0.31 7.38 -2.39 -0.02 0.30 16 47 H 0.01 0.50 7.24 -2.39 -0.02 0.48 16 48 H 0.02 0.92 7.84 -2.39 -0.02 0.90 16 49 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 50 H 0.14 3.15 7.65 -2.91 -0.02 3.13 16 Total: -1.00 -73.41 408.77 4.62 -68.79 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.91 Total: 12.09 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: 8.39 Total: 32.50 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -5.33 Total: -123.40 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.37 Total: -37.96 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -73.41 4.62 -68.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692303701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.778 kcal (2) G-P(sol) polarization free energy of solvation -73.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds