Wall clock time and date at job start Tue Mar 31 2020 18:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.51266 * 120.85215 * 2 1 4 4 C 1.53231 * 108.53660 * 128.92527 * 3 2 1 5 5 C 1.52955 * 109.40486 * 54.62847 * 4 3 2 6 6 C 1.50700 * 109.41302 * 176.29780 * 5 4 3 7 7 O 1.21278 * 120.00249 * 120.35385 * 6 5 4 8 8 N 1.34775 * 119.99730 * 300.34757 * 6 5 4 9 9 C 1.46507 * 120.00082 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47301 * 180.02562 * 9 8 6 11 11 C 1.31001 * 120.00005 * 127.15327 * 10 9 8 12 12 C 1.50700 * 119.99872 * 7.55569 * 11 10 9 13 13 N 1.46905 * 109.46420 * 127.00462 * 12 11 10 14 14 C 1.46900 * 110.99773 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47383 * 180.02562 * 14 13 12 16 16 O 1.21295 * 119.99938 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00004 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99774 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99976 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99710 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99579 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00302 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47049 * 90.00218 * 22 20 18 24 24 H 1.48502 * 109.47111 * 210.00325 * 22 20 18 25 25 H 1.48496 * 109.47059 * 330.00418 * 22 20 18 26 26 C 1.52961 * 109.81745 * 296.39902 * 5 4 3 27 27 C 1.51269 * 120.84505 * 180.27771 * 2 1 3 28 28 H 1.08001 * 120.00334 * 179.71879 * 1 2 3 29 29 H 1.08009 * 119.99677 * 359.72225 * 1 2 3 30 30 H 1.09001 * 109.62353 * 248.64185 * 3 2 1 31 31 H 1.08996 * 109.62754 * 9.21199 * 3 2 1 32 32 H 1.08999 * 109.48452 * 294.64407 * 4 3 2 33 33 H 1.09004 * 109.48297 * 174.60820 * 4 3 2 34 34 H 1.09004 * 109.35876 * 56.47000 * 5 4 3 35 35 H 0.97000 * 120.00378 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.46644 * 299.99894 * 9 8 6 37 37 H 1.08996 * 109.47011 * 60.00021 * 9 8 6 38 38 H 1.08003 * 119.99877 * 307.15662 * 10 9 8 39 39 H 1.08001 * 119.99930 * 187.56415 * 11 10 9 40 40 H 1.08994 * 109.47439 * 247.00699 * 12 11 10 41 41 H 1.08997 * 109.47197 * 7.01108 * 12 11 10 42 42 H 1.00902 * 111.00048 * 56.05484 * 13 12 11 43 43 H 1.09003 * 109.47149 * 300.00512 * 14 13 12 44 44 H 1.09000 * 109.47441 * 59.99910 * 14 13 12 45 45 H 0.96999 * 120.00225 * 359.97438 * 17 15 14 46 46 H 0.97005 * 119.99732 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.48523 * 303.62131 * 26 5 4 48 48 H 1.08993 * 109.49579 * 183.58133 * 26 5 4 49 49 H 1.08994 * 109.62970 * 350.79311 * 27 2 1 50 50 H 1.09008 * 109.62482 * 111.17089 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1192 1.2487 1.1302 5 6 3.9847 -0.0025 0.9725 6 6 5.0587 -0.0051 2.0297 7 8 5.1244 -0.9183 2.8251 8 7 5.9462 1.0073 2.0911 9 6 6.9907 1.0045 3.1185 10 6 7.8440 2.2378 2.9707 11 6 8.0456 3.0221 4.0005 12 6 7.5697 2.6066 5.3686 13 7 8.6862 2.6851 6.3201 14 6 8.2587 2.2857 7.6675 15 6 9.4277 2.3794 8.6139 16 8 10.5107 2.7426 8.2059 17 7 9.2698 2.0595 9.9136 18 6 10.3336 2.1442 10.7744 19 1 11.2980 2.4668 10.4110 20 6 10.1710 1.8139 12.1143 21 7 11.1907 1.8946 12.9393 22 14 8.5030 1.2551 12.7428 23 1 8.3980 -0.2213 12.6228 24 1 8.3537 1.6479 14.1671 25 1 7.4312 1.8945 11.9380 26 6 3.1191 -1.2544 1.1242 27 6 2.0856 -1.2987 -0.0063 28 1 -0.5401 -0.9353 -0.0046 29 1 -0.5400 0.9354 0.0045 30 1 2.5944 1.4211 -0.9562 31 1 1.4035 2.1326 0.1644 32 1 2.6057 1.2168 2.0912 33 1 3.7509 2.1359 1.0847 34 1 4.4477 0.0005 -0.0143 35 1 5.8935 1.7378 1.4551 36 1 6.5290 0.9988 4.1059 37 1 7.6119 0.1165 3.0026 38 1 8.2893 2.4751 2.0158 39 1 8.5527 3.9665 3.8689 40 1 6.7690 3.2715 5.6923 41 1 7.1978 1.5828 5.3286 42 1 9.0903 3.6097 6.3279 43 1 7.4625 2.9481 8.0074 44 1 7.8918 1.2596 7.6431 45 1 8.4037 1.7693 10.2399 46 1 11.0771 1.6643 13.8747 47 1 2.6056 -1.2271 2.0852 48 1 3.7505 -2.1414 1.0744 49 1 1.4033 -2.1334 0.1539 50 1 2.5916 -1.4183 -0.9643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699304739.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:56 Heat of formation + Delta-G solvation = -44.386401 kcal Electronic energy + Delta-G solvation = -27380.898458 eV Core-core repulsion = 23408.353080 eV Total energy + Delta-G solvation = -3972.545378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.55111 -38.57828 -38.30986 -37.05483 -35.14246 -33.96053 -33.48139 -32.71619 -31.64264 -31.51388 -28.41686 -27.37522 -25.82441 -24.67113 -23.44735 -23.07476 -22.31754 -20.49852 -19.57398 -19.12869 -18.84541 -18.25889 -17.31299 -16.74019 -15.98675 -15.96837 -15.51440 -15.33829 -15.11775 -15.05550 -14.82805 -14.45437 -14.22808 -13.98303 -13.81276 -13.71566 -13.38789 -13.23742 -12.90682 -12.83890 -12.73998 -12.46046 -12.27845 -12.10830 -11.85103 -11.82572 -11.68762 -11.55622 -11.14787 -11.09054 -10.89608 -10.66948 -10.58305 -10.14249 -9.96564 -9.63506 -9.56188 -9.46618 -9.17613 -8.58806 -8.18285 -8.12452 -6.30081 -3.81550 1.75122 1.79759 2.35636 3.02988 3.03839 3.08831 3.16491 3.74797 4.05906 4.11138 4.18754 4.21876 4.31561 4.51402 4.51962 4.59698 4.74450 4.78299 4.88170 4.89193 4.90706 5.04304 5.09846 5.21319 5.22597 5.25441 5.26802 5.38457 5.44982 5.49248 5.53971 5.57839 5.59588 5.64477 5.68621 5.71766 5.80694 5.86379 5.94204 6.09203 6.19076 6.30633 6.40678 6.53523 7.04602 7.18915 7.54118 7.59332 7.93786 8.15375 8.60756 8.95847 9.43420 9.83484 10.82990 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.001644 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.157026 B =17028.555648 C =17984.107168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.108 4.108 5 C -0.105 4.105 6 C 0.514 3.486 7 O -0.536 6.536 8 N -0.726 5.726 9 C 0.139 3.861 10 C -0.182 4.182 11 C -0.112 4.112 12 C 0.070 3.930 13 N -0.663 5.663 14 C 0.047 3.953 15 C 0.450 3.550 16 O -0.565 6.565 17 N -0.590 5.590 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.096 4.096 27 C -0.087 4.087 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.400 0.600 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.037 0.963 41 H 0.086 0.914 42 H 0.351 0.649 43 H 0.045 0.955 44 H 0.088 0.912 45 H 0.371 0.629 46 H 0.273 0.727 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.319 -0.725 -29.398 36.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.145 4.145 5 C -0.127 4.127 6 C 0.300 3.700 7 O -0.413 6.413 8 N -0.378 5.378 9 C 0.016 3.984 10 C -0.201 4.201 11 C -0.131 4.131 12 C -0.059 4.059 13 N -0.295 5.295 14 C -0.086 4.086 15 C 0.236 3.764 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.134 4.134 27 C -0.124 4.124 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.234 0.766 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.055 0.945 41 H 0.104 0.896 42 H 0.171 0.829 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.176 -1.799 -28.993 35.948 hybrid contribution -1.711 0.735 0.661 1.976 sum -22.887 -1.064 -28.332 36.437 Atomic orbital electron populations 1.23658 0.95020 1.01920 1.02718 1.21978 0.95113 0.95818 0.99348 1.20806 0.97451 0.95085 0.98800 1.21552 0.97133 0.96066 0.99795 1.21336 0.94879 0.97864 0.98593 1.20687 0.82138 0.81648 0.85550 1.90732 1.73235 1.35547 1.41735 1.46043 1.31614 1.25122 1.35011 1.20514 0.88615 0.97251 0.91975 1.22673 1.01322 0.96206 0.99932 1.22833 0.98015 0.98363 0.93900 1.21288 0.92612 1.01600 0.90390 1.60085 1.29260 1.34586 1.05601 1.21731 0.96167 1.01661 0.89012 1.19679 0.89799 0.84291 0.82648 1.90565 1.27175 1.50519 1.76388 1.42204 1.11653 1.61102 1.08014 1.19440 0.91945 1.43039 0.88992 0.86264 1.25038 0.97646 0.97684 0.95769 1.69629 1.30005 1.47679 1.04804 0.86668 0.83582 0.79703 0.79413 1.19546 1.20186 1.19543 1.21356 0.96510 0.96507 0.99062 1.20847 0.97601 0.94886 0.99048 0.88428 0.88474 0.90624 0.90861 0.91029 0.91118 0.88434 0.76620 0.90054 0.90670 0.86400 0.86500 0.94472 0.89631 0.82933 0.93686 0.89346 0.79662 0.91621 0.90998 0.90698 0.90907 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.07 13.99 29.02 0.41 -0.66 16 2 C -0.12 -0.69 5.35 -100.51 -0.54 -1.22 16 3 C -0.08 -0.37 6.03 -27.49 -0.17 -0.54 16 4 C -0.11 -0.54 5.14 -26.64 -0.14 -0.68 16 5 C -0.11 -0.66 2.42 -91.81 -0.22 -0.88 16 6 C 0.51 4.84 7.15 -10.99 -0.08 4.76 16 7 O -0.54 -7.49 15.94 5.56 0.09 -7.40 16 8 N -0.73 -5.48 5.42 -61.47 -0.33 -5.81 16 9 C 0.14 1.31 5.76 -5.19 -0.03 1.28 16 10 C -0.18 -1.52 9.63 -36.03 -0.35 -1.86 16 11 C -0.11 -1.08 9.77 -36.03 -0.35 -1.43 16 12 C 0.07 0.81 5.77 -4.97 -0.03 0.78 16 13 N -0.66 -10.31 6.11 -116.34 -0.71 -11.02 16 14 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 15 C 0.45 10.38 7.82 -10.99 -0.09 10.30 16 16 O -0.56 -15.36 15.78 5.54 0.09 -15.27 16 17 N -0.59 -14.28 5.09 -10.96 -0.06 -14.34 16 18 C -0.31 -8.76 10.16 -14.93 -0.15 -8.91 16 19 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 20 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 21 N -0.88 -25.96 13.96 55.50 0.77 -25.19 16 22 Si 0.88 19.62 27.74 -169.99 -4.71 14.91 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 26 C -0.10 -0.69 4.54 -26.63 -0.12 -0.81 16 27 C -0.09 -0.48 6.03 -27.48 -0.17 -0.64 16 28 H 0.10 0.48 7.92 -52.49 -0.42 0.07 16 29 H 0.10 0.46 7.92 -52.48 -0.42 0.04 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.29 7.89 -51.93 -0.41 -0.12 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.25 7.43 -51.93 -0.39 -0.13 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.40 1.86 7.81 -40.82 -0.32 1.54 16 36 H 0.08 0.87 5.30 -51.93 -0.28 0.60 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 1.00 5.29 -51.93 -0.27 0.73 16 42 H 0.35 5.53 8.42 -39.29 -0.33 5.20 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.37 7.88 5.76 -40.82 -0.24 7.65 16 46 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.60 7.99 -51.93 -0.42 0.19 16 49 H 0.07 0.38 7.89 -51.93 -0.41 -0.03 16 50 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 LS Contribution 406.73 15.07 6.13 6.13 Total: -1.00 -35.28 406.73 -8.97 -44.25 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -8.09 Total: 12.44 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.14 Total: 1.29 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.33 Total: -56.36 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.18 Total: -22.67 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.91 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.28 -8.97 -44.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699304739.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.132 kcal (2) G-P(sol) polarization free energy of solvation -35.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds