Wall clock time and date at job start Tue Mar 31 2020 18:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.51266 * 120.85215 * 2 1 4 4 C 1.53231 * 108.53660 * 128.92527 * 3 2 1 5 5 C 1.52955 * 109.40486 * 54.62847 * 4 3 2 6 6 C 1.50700 * 109.41302 * 176.29780 * 5 4 3 7 7 O 1.21278 * 120.00249 * 120.35385 * 6 5 4 8 8 N 1.34775 * 119.99730 * 300.34757 * 6 5 4 9 9 C 1.46507 * 120.00082 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47301 * 180.02562 * 9 8 6 11 11 C 1.31001 * 120.00005 * 127.15327 * 10 9 8 12 12 C 1.50700 * 119.99872 * 7.55569 * 11 10 9 13 13 N 1.46905 * 109.46420 * 127.00462 * 12 11 10 14 14 C 1.46900 * 110.99773 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47383 * 180.02562 * 14 13 12 16 16 O 1.21295 * 119.99938 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00004 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99774 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99976 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99710 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99579 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00302 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47049 * 90.00218 * 22 20 18 24 24 H 1.48502 * 109.47111 * 210.00325 * 22 20 18 25 25 H 1.48496 * 109.47059 * 330.00418 * 22 20 18 26 26 C 1.52961 * 109.81745 * 296.39902 * 5 4 3 27 27 C 1.51269 * 120.84505 * 180.27771 * 2 1 3 28 28 H 1.08001 * 120.00334 * 179.71879 * 1 2 3 29 29 H 1.08009 * 119.99677 * 359.72225 * 1 2 3 30 30 H 1.09001 * 109.62353 * 248.64185 * 3 2 1 31 31 H 1.08996 * 109.62754 * 9.21199 * 3 2 1 32 32 H 1.08999 * 109.48452 * 294.64407 * 4 3 2 33 33 H 1.09004 * 109.48297 * 174.60820 * 4 3 2 34 34 H 1.09004 * 109.35876 * 56.47000 * 5 4 3 35 35 H 0.97000 * 120.00378 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.46644 * 299.99894 * 9 8 6 37 37 H 1.08996 * 109.47011 * 60.00021 * 9 8 6 38 38 H 1.08003 * 119.99877 * 307.15662 * 10 9 8 39 39 H 1.08001 * 119.99930 * 187.56415 * 11 10 9 40 40 H 1.08994 * 109.47439 * 247.00699 * 12 11 10 41 41 H 1.08997 * 109.47197 * 7.01108 * 12 11 10 42 42 H 1.00902 * 111.00048 * 56.05484 * 13 12 11 43 43 H 1.09003 * 109.47149 * 300.00512 * 14 13 12 44 44 H 1.09000 * 109.47441 * 59.99910 * 14 13 12 45 45 H 0.96999 * 120.00225 * 359.97438 * 17 15 14 46 46 H 0.97005 * 119.99732 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.48523 * 303.62131 * 26 5 4 48 48 H 1.08993 * 109.49579 * 183.58133 * 26 5 4 49 49 H 1.08994 * 109.62970 * 350.79311 * 27 2 1 50 50 H 1.09008 * 109.62482 * 111.17089 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1192 1.2487 1.1302 5 6 3.9847 -0.0025 0.9725 6 6 5.0587 -0.0051 2.0297 7 8 5.1244 -0.9183 2.8251 8 7 5.9462 1.0073 2.0911 9 6 6.9907 1.0045 3.1185 10 6 7.8440 2.2378 2.9707 11 6 8.0456 3.0221 4.0005 12 6 7.5697 2.6066 5.3686 13 7 8.6862 2.6851 6.3201 14 6 8.2587 2.2857 7.6675 15 6 9.4277 2.3794 8.6139 16 8 10.5107 2.7426 8.2059 17 7 9.2698 2.0595 9.9136 18 6 10.3336 2.1442 10.7744 19 1 11.2980 2.4668 10.4110 20 6 10.1710 1.8139 12.1143 21 7 11.1907 1.8946 12.9393 22 14 8.5030 1.2551 12.7428 23 1 8.3980 -0.2213 12.6228 24 1 8.3537 1.6479 14.1671 25 1 7.4312 1.8945 11.9380 26 6 3.1191 -1.2544 1.1242 27 6 2.0856 -1.2987 -0.0063 28 1 -0.5401 -0.9353 -0.0046 29 1 -0.5400 0.9354 0.0045 30 1 2.5944 1.4211 -0.9562 31 1 1.4035 2.1326 0.1644 32 1 2.6057 1.2168 2.0912 33 1 3.7509 2.1359 1.0847 34 1 4.4477 0.0005 -0.0143 35 1 5.8935 1.7378 1.4551 36 1 6.5290 0.9988 4.1059 37 1 7.6119 0.1165 3.0026 38 1 8.2893 2.4751 2.0158 39 1 8.5527 3.9665 3.8689 40 1 6.7690 3.2715 5.6923 41 1 7.1978 1.5828 5.3286 42 1 9.0903 3.6097 6.3279 43 1 7.4625 2.9481 8.0074 44 1 7.8918 1.2596 7.6431 45 1 8.4037 1.7693 10.2399 46 1 11.0771 1.6643 13.8747 47 1 2.6056 -1.2271 2.0852 48 1 3.7505 -2.1414 1.0744 49 1 1.4033 -2.1334 0.1539 50 1 2.5916 -1.4183 -0.9643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699304739.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:55 Heat of formation + Delta-G solvation = -71.192744 kcal Electronic energy + Delta-G solvation = -27382.060868 eV Core-core repulsion = 23408.353080 eV Total energy + Delta-G solvation = -3973.707789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.22654 -40.33781 -38.90849 -38.00466 -36.29867 -35.80006 -34.20128 -33.76575 -33.41111 -31.95567 -29.53440 -28.21464 -26.85462 -25.97735 -24.40254 -23.86293 -22.89418 -21.35793 -21.16050 -20.46353 -19.74152 -19.27066 -18.15536 -17.74522 -17.29437 -17.01643 -16.66751 -16.57212 -15.87964 -15.82960 -15.72909 -15.47086 -15.31297 -15.00952 -14.80995 -14.50892 -14.43886 -14.34935 -14.19055 -13.93624 -13.71697 -13.34838 -13.27072 -13.18109 -13.00995 -12.75869 -12.54662 -12.42725 -12.36788 -11.99081 -11.96546 -11.68819 -11.55861 -11.53476 -11.09617 -10.88752 -10.47532 -10.36101 -10.26529 -9.95546 -9.87792 -9.28416 -8.42912 -6.03951 1.03866 1.29046 1.34679 1.39475 1.43154 1.63679 1.92718 2.21555 2.36498 2.77527 3.13225 3.51597 3.60922 3.70315 3.74602 3.85576 4.05528 4.09898 4.11425 4.15900 4.27336 4.33487 4.39371 4.41211 4.46643 4.48499 4.49188 4.63453 4.68883 4.75685 4.83094 4.87181 4.97761 5.04483 5.06642 5.14600 5.18989 5.22829 5.34300 5.41032 5.50368 5.58644 5.80241 5.80736 5.88665 6.00748 6.01670 6.36220 6.57750 6.57792 6.85815 7.27274 7.37409 7.93467 8.74625 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.001644 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.157026 B =17028.555648 C =17984.107168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.081 4.081 4 C -0.103 4.103 5 C -0.097 4.097 6 C 0.510 3.490 7 O -0.589 6.589 8 N -0.710 5.710 9 C 0.138 3.862 10 C -0.162 4.162 11 C -0.127 4.127 12 C 0.072 3.928 13 N -0.683 5.683 14 C 0.061 3.939 15 C 0.448 3.552 16 O -0.613 6.613 17 N -0.590 5.590 18 C -0.331 4.331 19 H 0.056 0.944 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.232 1.232 26 C -0.095 4.095 27 C -0.083 4.083 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.417 0.583 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.143 0.857 39 H 0.128 0.872 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.347 0.653 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.049 0.951 48 H 0.060 0.940 49 H 0.071 0.929 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.614 -0.177 -31.411 40.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.132 4.132 3 C -0.118 4.118 4 C -0.141 4.141 5 C -0.118 4.118 6 C 0.298 3.702 7 O -0.469 6.469 8 N -0.363 5.363 9 C 0.015 3.985 10 C -0.181 4.181 11 C -0.147 4.147 12 C -0.055 4.055 13 N -0.315 5.315 14 C -0.072 4.072 15 C 0.236 3.764 16 O -0.498 6.498 17 N -0.232 5.232 18 C -0.460 4.460 19 H 0.074 0.926 20 C -0.212 4.212 21 N -0.573 5.573 22 Si 0.784 3.216 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.155 1.155 26 C -0.133 4.133 27 C -0.120 4.120 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.141 0.859 35 H 0.255 0.745 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.160 0.840 39 H 0.146 0.854 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.166 0.834 43 H 0.097 0.903 44 H 0.127 0.873 45 H 0.225 0.775 46 H 0.089 0.911 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.496 -1.214 -31.062 39.577 hybrid contribution -0.578 0.566 1.200 1.447 sum -25.074 -0.648 -29.862 38.998 Atomic orbital electron populations 1.23793 0.95222 1.02355 1.02678 1.22145 0.95346 0.96330 0.99416 1.20832 0.97274 0.94543 0.99182 1.21536 0.97251 0.95993 0.99280 1.21345 0.93968 0.98023 0.98493 1.21288 0.82535 0.80992 0.85428 1.90711 1.74635 1.37623 1.43916 1.45896 1.30526 1.25186 1.34660 1.20401 0.88925 0.97231 0.91940 1.22760 1.00013 0.94669 1.00694 1.22835 0.99281 0.99380 0.93153 1.21311 0.91758 1.01968 0.90489 1.60075 1.31427 1.34561 1.05485 1.21640 0.93507 1.03828 0.88202 1.20942 0.90968 0.81638 0.82837 1.90540 1.29935 1.52018 1.77300 1.42035 1.11285 1.61813 1.08073 1.19027 0.91357 1.44991 0.90630 0.92576 1.26104 1.03162 0.96806 0.95157 1.69805 1.33365 1.48627 1.05526 0.85375 0.77569 0.79716 0.78935 1.18321 1.19815 1.15492 1.21299 0.96734 0.96619 0.98687 1.20818 0.97171 0.95142 0.98832 0.88450 0.87757 0.88985 0.90168 0.92782 0.89042 0.85886 0.74541 0.91384 0.92327 0.83960 0.85447 0.92937 0.89865 0.83375 0.90329 0.87255 0.77481 0.91099 0.93257 0.92127 0.91069 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.94 13.99 67.78 0.95 -0.99 16 2 C -0.13 -1.25 5.35 -16.12 -0.09 -1.33 16 3 C -0.08 -0.49 6.03 30.11 0.18 -0.31 16 4 C -0.10 -0.78 5.14 30.66 0.16 -0.63 16 5 C -0.10 -1.05 2.42 -11.57 -0.03 -1.08 16 6 C 0.51 9.11 7.15 87.66 0.63 9.73 16 7 O -0.59 -16.71 15.94 -3.02 -0.05 -16.76 16 8 N -0.71 -9.26 5.42 -466.78 -2.53 -11.79 16 9 C 0.14 2.40 5.76 85.63 0.49 2.90 16 10 C -0.16 -2.27 9.63 25.65 0.25 -2.03 16 11 C -0.13 -2.15 9.77 25.65 0.25 -1.90 16 12 C 0.07 1.51 5.77 85.56 0.49 2.01 16 13 N -0.68 -20.24 6.11 -521.98 -3.19 -23.43 16 14 C 0.06 1.90 6.17 85.56 0.53 2.43 16 15 C 0.45 20.68 7.82 87.66 0.69 21.37 16 16 O -0.61 -34.58 15.78 -3.08 -0.05 -34.63 16 17 N -0.59 -28.44 5.09 -306.98 -1.56 -30.00 16 18 C -0.33 -19.71 10.16 84.04 0.85 -18.86 16 19 H 0.06 3.97 7.39 -2.91 -0.02 3.94 16 20 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 21 N -0.93 -56.78 13.96 21.66 0.30 -56.48 16 22 Si 0.96 39.45 27.74 68.60 1.90 41.36 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 25 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 26 C -0.10 -1.34 4.54 30.66 0.14 -1.20 16 27 C -0.08 -0.81 6.03 30.11 0.18 -0.63 16 28 H 0.10 0.88 7.92 -2.91 -0.02 0.86 16 29 H 0.10 0.81 7.92 -2.91 -0.02 0.79 16 30 H 0.09 0.29 8.14 -2.39 -0.02 0.28 16 31 H 0.08 0.41 7.89 -2.39 -0.02 0.39 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.32 7.43 -2.38 -0.02 0.31 16 34 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.42 2.49 7.81 -92.71 -0.72 1.76 16 36 H 0.07 1.39 5.30 -2.39 -0.01 1.38 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.80 5.29 -2.39 -0.01 1.78 16 42 H 0.35 10.66 8.42 -89.69 -0.76 9.90 16 43 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.39 15.59 5.76 -92.71 -0.53 15.05 16 46 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 47 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.06 1.00 7.99 -2.39 -0.02 0.98 16 49 H 0.07 0.71 7.89 -2.39 -0.02 0.69 16 50 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -83.45 406.73 -0.14 -83.59 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: -1.11 Total: 38.95 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 6.14 Total: 9.20 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -6.98 Total: -121.71 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -0.10 Total: -51.38 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.90 Total: 41.36 kcal Total: -83.45 -0.14 -83.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699304739.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.399 kcal (2) G-P(sol) polarization free energy of solvation -83.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds