Wall clock time and date at job start Tue Mar 31 2020 18:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 110.94375 * 2 1 4 4 O 1.21289 * 120.00010 * 236.00710 * 3 2 1 5 5 N 1.34771 * 120.00391 * 56.01051 * 3 2 1 6 6 C 1.46497 * 120.00474 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.46960 * 35.00130 * 6 5 3 8 8 C 1.53001 * 109.47261 * 154.99852 * 6 5 3 9 9 N 1.46899 * 109.47304 * 304.99967 * 8 6 5 10 10 C 1.46894 * 111.00298 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.47415 * 180.02562 * 10 9 8 12 12 O 1.21297 * 119.99912 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00086 * 180.02562 * 11 10 9 14 14 C 1.37096 * 119.99962 * 179.97438 * 13 11 10 15 15 H 1.08002 * 120.00214 * 359.97438 * 14 13 11 16 16 C 1.38953 * 120.00322 * 179.97438 * 14 13 11 17 17 N 1.31406 * 120.00408 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99715 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46847 * 89.99953 * 18 16 14 20 20 H 1.48495 * 109.47091 * 209.99893 * 18 16 14 21 21 H 1.48500 * 109.47115 * 330.00196 * 18 16 14 22 22 C 1.52995 * 109.47266 * 275.00116 * 6 5 3 23 23 C 1.52996 * 117.50099 * 128.62018 * 22 6 5 24 24 C 1.53003 * 60.00144 * 252.50913 * 23 22 6 25 25 C 1.54637 * 111.03763 * 236.00936 * 2 1 3 26 26 C 1.51104 * 104.82203 * 217.39290 * 25 2 1 27 27 C 1.30524 * 111.10723 * 16.38048 * 26 25 2 28 28 C 1.51101 * 111.10394 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.46953 * 183.98837 * 1 2 3 30 30 H 1.08997 * 109.47177 * 303.99280 * 1 2 3 31 31 H 1.09002 * 109.46636 * 63.99039 * 1 2 3 32 32 H 0.97001 * 119.99764 * 359.97438 * 5 3 2 33 33 H 1.08994 * 109.47035 * 65.00117 * 8 6 5 34 34 H 1.08998 * 109.47046 * 185.00049 * 8 6 5 35 35 H 1.00899 * 111.00495 * 303.95656 * 9 8 6 36 36 H 1.09005 * 109.47613 * 300.00609 * 10 9 8 37 37 H 1.09003 * 109.47109 * 60.00426 * 10 9 8 38 38 H 0.96999 * 120.00126 * 359.97438 * 13 11 10 39 39 H 0.97001 * 120.00033 * 179.97438 * 17 16 14 40 40 H 1.09003 * 115.55090 * 274.33014 * 22 6 5 41 41 H 1.09004 * 117.49932 * 0.02562 * 23 22 6 42 42 H 1.08998 * 117.50202 * 145.01675 * 23 22 6 43 43 H 1.08997 * 117.49703 * 252.50732 * 24 23 22 44 44 H 1.08997 * 117.51558 * 107.47912 * 24 23 22 45 45 H 1.09002 * 110.38719 * 98.52368 * 25 2 1 46 46 H 1.09000 * 110.38599 * 336.25788 * 25 2 1 47 47 H 1.08003 * 124.44176 * 196.36011 * 26 25 2 48 48 H 1.08000 * 124.44551 * 179.97438 * 27 26 25 49 49 H 1.08998 * 110.38623 * 102.37474 * 28 27 26 50 50 H 1.08992 * 110.38694 * 224.63451 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0687 1.4074 0.0000 4 8 2.8339 1.7638 -0.8709 5 7 1.7002 2.2700 0.9677 6 6 2.2243 3.6380 0.9680 7 1 2.3376 3.9839 -0.0594 8 6 1.2520 4.5565 1.7110 9 7 -0.0846 4.4415 1.1125 10 6 -1.0469 5.3110 1.8023 11 6 -2.4035 5.1659 1.1624 12 8 -2.5541 4.4119 0.2243 13 7 -3.4495 5.8739 1.6325 14 6 -4.6836 5.7423 1.0501 15 1 -4.8175 5.0715 0.2142 16 6 -5.7622 6.4718 1.5350 17 7 -6.9452 6.3452 0.9771 18 14 -5.5309 7.6314 2.9812 19 1 -5.1627 8.9800 2.4802 20 1 -6.7964 7.7186 3.7532 21 1 -4.4495 7.1175 3.8597 22 6 3.5848 3.6628 1.6675 23 6 4.7482 4.3247 0.9264 24 6 4.7011 2.8023 1.0721 25 6 2.0851 -0.8069 -1.1967 26 6 3.3071 -1.5112 -0.6545 27 6 3.3088 -1.5119 0.6508 28 6 2.0885 -0.8076 1.1968 29 1 -0.3633 -1.0252 0.0715 30 1 -0.3633 0.5745 0.8520 31 1 -0.3633 0.4507 -0.9236 32 1 1.0880 1.9851 1.6640 33 1 1.2066 4.2649 2.7602 34 1 1.5966 5.5878 1.6351 35 1 -0.0571 4.6443 0.1245 36 1 -1.1082 5.0243 2.8522 37 1 -0.7185 6.3477 1.7274 38 1 -3.3292 6.4766 2.3830 39 1 -7.6982 6.8543 1.3159 40 1 3.5540 3.7672 2.7521 41 1 4.5443 4.7429 -0.0594 42 1 5.4830 4.8649 1.5233 43 1 5.4049 2.3411 1.7649 44 1 4.4661 2.2184 0.1823 45 1 2.3628 -0.1368 -2.0104 46 1 1.3485 -1.5338 -1.5389 47 1 4.0777 -1.9559 -1.2666 48 1 4.0810 -1.9573 1.2604 49 1 1.3516 -1.5345 1.5383 50 1 2.3682 -0.1401 2.0117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699593677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:07 Heat of formation + Delta-G solvation = -49.734972 kcal Electronic energy + Delta-G solvation = -29505.494587 eV Core-core repulsion = 25532.717278 eV Total energy + Delta-G solvation = -3972.777310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.66370 -40.28886 -39.41160 -37.82839 -36.75468 -35.89936 -34.81199 -33.72643 -32.69189 -30.53964 -29.07012 -27.94767 -26.47560 -25.65928 -23.95002 -23.12259 -23.06696 -21.46342 -21.16075 -20.38195 -20.14482 -19.76118 -18.05073 -17.68382 -17.47508 -17.09420 -16.70621 -16.56487 -16.12955 -15.85398 -15.58627 -15.44969 -15.01341 -14.78212 -14.64597 -14.35815 -14.15238 -13.95927 -13.71412 -13.64658 -13.45118 -13.15829 -13.08751 -13.02026 -12.76904 -12.74171 -12.40435 -12.34981 -12.23780 -12.11332 -12.05372 -11.96934 -11.58978 -11.49570 -11.25094 -11.11429 -10.62139 -10.41079 -10.23298 -9.87502 -9.74530 -9.33704 -8.40019 -6.00861 1.31142 1.36839 1.40465 1.45822 1.73618 1.98928 2.20059 2.24296 2.70346 3.03319 3.16895 3.36202 3.47988 3.68772 3.74921 3.81550 4.00926 4.11893 4.14873 4.17880 4.26718 4.35060 4.36979 4.47620 4.50768 4.51563 4.61454 4.69786 4.73330 4.78694 4.83155 4.84203 4.91834 4.94471 5.02616 5.04990 5.08100 5.17178 5.28279 5.30828 5.40766 5.53539 5.62059 5.66337 5.90539 6.01941 6.03862 6.29684 6.61303 6.70272 6.90256 7.39367 7.42096 7.99432 8.77761 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.002629 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.775621 B =10646.773674 C =11980.375092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C 0.531 3.469 4 O -0.577 6.577 5 N -0.694 5.694 6 C 0.181 3.819 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.679 5.679 10 C 0.063 3.937 11 C 0.448 3.552 12 O -0.614 6.614 13 N -0.592 5.592 14 C -0.327 4.327 15 H 0.053 0.947 16 C -0.017 4.017 17 N -0.936 5.936 18 Si 0.966 3.034 19 H -0.259 1.259 20 H -0.277 1.277 21 H -0.228 1.228 22 C -0.157 4.157 23 C -0.168 4.168 24 C -0.190 4.190 25 C -0.088 4.088 26 C -0.169 4.169 27 C -0.172 4.172 28 C -0.081 4.081 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.410 0.590 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.339 0.661 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.090 0.910 47 H 0.131 0.869 48 H 0.141 0.859 49 H 0.101 0.899 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.745 -8.599 9.199 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 C 0.318 3.682 4 O -0.457 6.457 5 N -0.343 5.343 6 C 0.076 3.924 7 H 0.076 0.924 8 C -0.069 4.069 9 N -0.311 5.311 10 C -0.069 4.069 11 C 0.236 3.764 12 O -0.498 6.498 13 N -0.234 5.234 14 C -0.456 4.456 15 H 0.072 0.928 16 C -0.215 4.215 17 N -0.577 5.577 18 Si 0.786 3.214 19 H -0.183 1.183 20 H -0.202 1.202 21 H -0.151 1.151 22 C -0.177 4.177 23 C -0.206 4.206 24 C -0.227 4.227 25 C -0.125 4.125 26 C -0.187 4.187 27 C -0.190 4.190 28 C -0.118 4.118 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.247 0.753 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.157 0.843 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.225 0.775 39 H 0.088 0.912 40 H 0.145 0.855 41 H 0.099 0.901 42 H 0.130 0.870 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.149 0.851 48 H 0.159 0.841 49 H 0.120 0.880 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 24.770 -9.331 8.323 27.747 hybrid contribution -0.649 1.381 -0.111 1.530 sum 24.121 -7.950 8.212 26.693 Atomic orbital electron populations 1.21750 0.91227 1.03591 1.02336 1.21630 0.97054 0.91433 0.98777 1.20498 0.79710 0.87404 0.80564 1.90578 1.37423 1.79082 1.38652 1.45719 1.48016 1.11375 1.29238 1.20439 0.91267 0.82000 0.98743 0.92402 1.22290 0.86402 0.98385 0.99847 1.60039 1.06636 1.56906 1.07537 1.21639 0.88156 0.97234 0.99862 1.21049 0.87244 0.82392 0.85714 1.90561 1.85638 1.41400 1.32177 1.42029 1.08089 1.41127 1.32120 1.18989 0.85887 1.25504 1.15268 0.92845 1.26139 0.93884 0.99707 1.01814 1.69809 1.01471 1.42929 1.43514 0.85353 0.79688 0.78568 0.77819 1.18345 1.20205 1.15076 1.22624 0.89101 1.06102 0.99835 1.22953 1.00754 0.95355 1.01489 1.23154 1.01480 0.94299 1.03731 1.21362 0.96347 0.97740 0.97075 1.23330 0.98253 1.00264 0.96823 1.23404 0.98713 1.00766 0.96125 1.21468 0.96316 0.98224 0.95794 0.89720 0.91440 0.93846 0.75313 0.87981 0.92054 0.84345 0.86164 0.90571 0.77455 0.91209 0.85515 0.90113 0.87033 0.88483 0.89087 0.92015 0.89184 0.85097 0.84111 0.88036 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.43 71.98 0.61 -2.17 16 2 C -0.09 -1.79 0.85 -51.76 -0.04 -1.83 16 3 C 0.53 13.41 5.85 87.66 0.51 13.93 16 4 O -0.58 -18.49 12.56 -3.06 -0.04 -18.53 16 5 N -0.69 -14.62 4.61 -442.55 -2.04 -16.66 16 6 C 0.18 3.63 2.51 44.99 0.11 3.74 16 7 H 0.06 1.52 7.33 -2.39 -0.02 1.50 16 8 C 0.06 1.04 5.23 86.30 0.45 1.49 16 9 N -0.68 -17.68 5.85 -517.95 -3.03 -20.71 16 10 C 0.06 1.72 6.17 85.56 0.53 2.24 16 11 C 0.45 19.30 7.82 87.66 0.69 19.98 16 12 O -0.61 -33.10 15.78 -3.08 -0.05 -33.15 16 13 N -0.59 -26.97 5.09 -306.98 -1.56 -28.54 16 14 C -0.33 -18.92 10.16 84.04 0.85 -18.06 16 15 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 16 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 17 N -0.94 -56.25 13.96 21.66 0.30 -55.94 16 18 Si 0.97 37.96 27.74 68.60 1.90 39.86 16 19 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 20 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 21 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 22 C -0.16 -2.61 5.36 -10.80 -0.06 -2.66 16 23 C -0.17 -2.89 10.18 30.59 0.31 -2.58 16 24 C -0.19 -3.76 9.73 30.60 0.30 -3.46 16 25 C -0.09 -1.90 5.72 30.53 0.17 -1.73 16 26 C -0.17 -3.17 10.78 26.27 0.28 -2.88 16 27 C -0.17 -2.80 10.78 26.26 0.28 -2.52 16 28 C -0.08 -1.27 5.93 30.59 0.18 -1.09 16 29 H 0.08 1.44 8.05 -2.38 -0.02 1.42 16 30 H 0.07 1.43 7.37 -2.39 -0.02 1.41 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.41 7.63 7.83 -92.71 -0.73 6.90 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.34 10.49 8.43 -89.69 -0.76 9.74 16 36 H 0.12 2.58 8.14 -2.38 -0.02 2.56 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.39 14.51 5.76 -92.71 -0.53 13.97 16 39 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.13 1.57 8.11 -2.39 -0.02 1.55 16 41 H 0.08 1.60 8.05 -2.39 -0.02 1.58 16 42 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.09 2.42 5.02 -2.39 -0.01 2.41 16 45 H 0.06 1.65 7.01 -2.39 -0.02 1.63 16 46 H 0.09 1.70 7.89 -2.39 -0.02 1.68 16 47 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 48 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 49 H 0.10 1.30 7.83 -2.39 -0.02 1.28 16 50 H 0.08 1.16 7.86 -2.39 -0.02 1.14 16 Total: -1.00 -78.77 402.65 0.02 -78.74 By element: Atomic # 1 Polarization: 54.09 SS G_CDS: -1.11 Total: 52.98 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.65 Total: 1.94 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -6.33 Total: -121.85 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -0.09 Total: -51.68 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 1.90 Total: 39.86 kcal Total: -78.77 0.02 -78.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699593677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.009 kcal (2) G-P(sol) polarization free energy of solvation -78.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds