Wall clock time and date at job start Tue Mar 31 2020 19:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 110.30276 * 2 1 4 4 N 1.46902 * 109.46626 * 300.69777 * 3 2 1 5 5 C 1.46905 * 110.99800 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47194 * 180.02562 * 5 4 3 7 7 O 1.21290 * 119.99728 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99867 * 180.02562 * 6 5 4 9 9 C 1.37100 * 120.00071 * 180.02562 * 8 6 5 10 10 H 1.08004 * 119.99830 * 359.97438 * 9 8 6 11 11 C 1.38945 * 120.00246 * 179.97438 * 9 8 6 12 12 N 1.31417 * 120.00180 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00115 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47027 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47041 * 120.00089 * 13 11 9 16 16 H 1.48501 * 109.47312 * 240.00031 * 13 11 9 17 17 C 1.54281 * 110.34569 * 122.17020 * 2 1 3 18 18 C 1.54390 * 104.96238 * 118.97868 * 17 2 1 19 19 N 1.48140 * 104.61659 * 23.86821 * 18 17 2 20 20 C 1.34777 * 127.84058 * 140.38567 * 19 18 17 21 21 O 1.21612 * 120.00420 * 179.97438 * 20 19 18 22 22 C 1.47101 * 119.99954 * 359.97438 * 20 19 18 23 23 C 1.32989 * 120.00399 * 179.97438 * 22 20 19 24 24 C 1.51406 * 136.31159 * 359.62318 * 23 22 20 25 25 C 1.53385 * 87.51762 * 206.05802 * 24 23 22 26 26 C 1.51405 * 136.32147 * 179.97438 * 23 22 20 27 27 C 1.48420 * 104.33850 * 320.39035 * 19 18 17 28 28 H 1.08997 * 109.47104 * 59.30360 * 1 2 3 29 29 H 1.09003 * 109.46924 * 179.30131 * 1 2 3 30 30 H 1.08992 * 109.47449 * 299.29894 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.70124 * 3 2 1 32 32 H 1.09000 * 109.47050 * 180.69953 * 3 2 1 33 33 H 1.00904 * 111.00423 * 303.95194 * 4 3 2 34 34 H 1.09002 * 109.47091 * 300.00139 * 5 4 3 35 35 H 1.09001 * 109.46854 * 60.00166 * 5 4 3 36 36 H 0.96999 * 120.00108 * 0.02562 * 8 6 5 37 37 H 0.96994 * 120.00398 * 179.97438 * 12 11 9 38 38 H 1.08994 * 110.34912 * 237.85417 * 17 2 1 39 39 H 1.09000 * 110.34119 * 0.11178 * 17 2 1 40 40 H 1.08998 * 110.40924 * 142.65195 * 18 17 2 41 41 H 1.08998 * 110.40746 * 264.96857 * 18 17 2 42 42 H 1.08002 * 119.99674 * 359.97438 * 22 20 19 43 43 H 1.08999 * 113.56671 * 320.64085 * 24 23 22 44 44 H 1.09001 * 113.56077 * 91.37834 * 24 23 22 45 45 H 1.09000 * 113.96595 * 220.29302 * 25 24 23 46 46 H 1.08995 * 113.59211 * 88.79745 * 25 24 23 47 47 H 1.08999 * 113.56415 * 268.63182 * 26 23 22 48 48 H 1.09006 * 113.55816 * 39.35835 * 26 23 22 49 49 H 1.09000 * 110.45233 * 280.86937 * 27 19 18 50 50 H 1.09008 * 110.49218 * 158.35245 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4350 0.0000 4 7 1.5676 2.1395 -1.1910 5 6 2.0588 3.5235 -1.2250 6 6 1.5329 4.2130 -2.4575 7 8 0.8187 3.6109 -3.2311 8 7 1.8562 5.4988 -2.7001 9 6 1.3773 6.1262 -3.8211 10 1 0.7414 5.5901 -4.5100 11 6 1.7101 7.4519 -4.0709 12 7 2.4835 8.1045 -3.2324 13 14 1.0582 8.3066 -5.5986 14 1 0.2156 7.3607 -6.3735 15 1 0.2428 9.4816 -5.1986 16 1 2.1974 8.7573 -6.4379 17 6 2.0664 -0.7702 1.2245 18 6 2.8825 -1.9399 0.6334 19 7 3.2693 -1.4794 -0.7204 20 6 4.4464 -1.6621 -1.3510 21 8 4.6110 -1.2194 -2.4717 22 6 5.5320 -2.3969 -0.6837 23 6 6.6933 -2.5777 -1.3060 24 6 7.2831 -2.2112 -2.6514 25 6 8.2080 -3.4256 -2.5020 26 6 8.0135 -3.2473 -0.9879 27 6 2.0667 -0.7709 -1.2252 28 1 -0.3633 0.5246 -0.8836 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3634 0.5029 0.8961 31 1 1.7153 1.9502 0.8962 32 1 3.1507 1.4192 -0.0125 33 1 1.8202 1.6456 -2.0338 34 1 1.7136 4.0536 -0.3374 35 1 3.1486 3.5218 -1.2463 36 1 2.4276 5.9802 -2.0816 37 1 2.7162 9.0298 -3.4070 38 1 2.7080 -0.1263 1.8259 39 1 1.2398 -1.1502 1.8249 40 1 3.7693 -2.1286 1.2385 41 1 2.2683 -2.8381 0.5702 42 1 5.3859 -2.7897 0.3118 43 1 6.5766 -2.3025 -3.4764 44 1 7.8119 -1.2581 -2.6503 45 1 9.2295 -3.2482 -2.8384 46 1 7.7827 -4.3489 -2.8951 47 1 8.7424 -2.5782 -0.5307 48 1 7.9059 -4.1884 -0.4485 49 1 1.3242 -1.4859 -1.5796 50 1 2.3384 -0.0776 -2.0213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699838365.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:12 Heat of formation + Delta-G solvation = -25.110290 kcal Electronic energy + Delta-G solvation = -28774.271634 eV Core-core repulsion = 24802.562130 eV Total energy + Delta-G solvation = -3971.709503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.44423 -39.21018 -38.23705 -37.74186 -35.27432 -33.84698 -32.75886 -31.17039 -31.05860 -29.75362 -27.43281 -26.70252 -26.07286 -25.21319 -23.94807 -23.20332 -22.48610 -20.15617 -19.36135 -19.02333 -17.97711 -17.79518 -17.37236 -16.36758 -15.93017 -15.90542 -15.65000 -15.24861 -14.89946 -14.65152 -14.36276 -14.25754 -14.00904 -13.75108 -13.64317 -13.27328 -12.78411 -12.74354 -12.49687 -12.47271 -12.25545 -12.22387 -12.03653 -11.92607 -11.77256 -11.49315 -11.37714 -11.30743 -11.02323 -10.87276 -10.80897 -10.70425 -10.64729 -10.30538 -10.17696 -9.79847 -9.49879 -9.47191 -8.82152 -8.39584 -7.99048 -7.90451 -6.37125 -3.77623 1.12646 2.77528 3.16738 3.19907 3.29972 3.37788 3.93217 3.96692 4.10866 4.15037 4.29376 4.36435 4.42714 4.48452 4.72000 4.76170 4.80731 4.97406 5.08822 5.15173 5.17446 5.24000 5.29622 5.31594 5.33292 5.36046 5.48586 5.50257 5.53746 5.67725 5.68113 5.72431 5.78589 5.79754 5.88093 5.90785 5.94562 6.02782 6.06143 6.12744 6.17294 6.32194 6.35094 6.49160 7.26423 7.44328 7.60035 7.70537 8.10624 8.11669 8.66525 9.22909 9.59690 10.11334 10.80900 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.002423 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.103149 B =11553.261868 C =13371.874497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.070 4.070 3 C 0.073 3.927 4 N -0.666 5.666 5 C 0.051 3.949 6 C 0.443 3.557 7 O -0.582 6.582 8 N -0.565 5.565 9 C -0.297 4.297 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.903 5.903 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.127 4.127 18 C 0.102 3.898 19 N -0.622 5.622 20 C 0.569 3.431 21 O -0.537 6.537 22 C -0.197 4.197 23 C -0.061 4.061 24 C -0.108 4.108 25 C -0.143 4.143 26 C -0.108 4.108 27 C 0.112 3.888 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.026 0.974 33 H 0.348 0.652 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.392 0.608 37 H 0.270 0.730 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.101 -23.728 13.126 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.071 4.071 3 C -0.056 4.056 4 N -0.300 5.300 5 C -0.082 4.082 6 C 0.228 3.772 7 O -0.466 6.466 8 N -0.202 5.202 9 C -0.426 4.426 10 H 0.121 0.879 11 C -0.181 4.181 12 N -0.545 5.545 13 Si 0.756 3.244 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.166 4.166 18 C -0.022 4.022 19 N -0.356 5.356 20 C 0.360 3.640 21 O -0.415 6.415 22 C -0.218 4.218 23 C -0.063 4.063 24 C -0.144 4.144 25 C -0.180 4.180 26 C -0.145 4.145 27 C -0.011 4.011 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.169 0.831 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.148 0.852 43 H 0.106 0.894 44 H 0.117 0.883 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.120 0.880 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.276 -23.543 12.195 27.494 hybrid contribution 0.974 0.713 -0.304 1.245 sum 8.251 -22.830 11.890 27.031 Atomic orbital electron populations 1.21743 0.92274 1.00987 1.03715 1.21501 0.97099 0.94466 0.94061 1.21984 0.96354 0.92572 0.94739 1.60179 1.63002 1.01802 1.04991 1.21659 0.97271 0.90297 0.98977 1.19808 0.85922 0.83264 0.88198 1.90519 1.40965 1.65498 1.49608 1.41868 1.45178 1.09809 1.23359 1.19756 1.27986 0.94344 1.00533 0.87879 1.25261 0.97010 0.96661 0.99136 1.69623 1.36455 1.11569 1.36825 0.85803 0.78522 0.79065 0.80970 1.19211 1.20774 1.20792 1.22673 0.99935 0.96682 0.97301 1.22403 0.99157 0.97335 0.83260 1.48921 1.12992 1.56084 1.17622 1.18038 0.80890 0.79838 0.85206 1.90823 1.81014 1.50710 1.18997 1.21520 0.93608 1.06036 1.00639 1.23510 0.93632 0.92368 0.96804 1.22250 0.98027 0.98473 0.95685 1.22737 1.00561 0.99062 0.95629 1.22359 0.93930 1.00504 0.97658 1.22558 0.85864 0.95657 0.97003 0.90365 0.93256 0.92388 0.90772 0.95625 0.83110 0.89634 0.94043 0.77495 0.91985 0.90711 0.89832 0.90368 0.90984 0.85155 0.89414 0.88252 0.90300 0.89745 0.88037 0.90425 0.90706 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.09 37.16 0.30 -1.04 16 2 C -0.07 -0.73 0.82 -153.11 -0.13 -0.86 16 3 C 0.07 0.94 4.47 -3.82 -0.02 0.93 16 4 N -0.67 -11.23 5.38 -115.05 -0.62 -11.85 16 5 C 0.05 0.95 6.17 -4.97 -0.03 0.92 16 6 C 0.44 10.90 7.82 -10.99 -0.09 10.82 16 7 O -0.58 -16.35 15.78 5.55 0.09 -16.27 16 8 N -0.57 -14.87 5.29 -10.96 -0.06 -14.93 16 9 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 10 H 0.10 3.11 7.16 -52.48 -0.38 2.74 16 11 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 12 N -0.90 -25.20 13.05 55.50 0.72 -24.48 16 13 Si 0.93 21.61 29.55 -169.99 -5.02 16.59 16 14 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 C -0.13 -0.96 6.30 -25.33 -0.16 -1.12 16 18 C 0.10 0.76 6.88 -2.41 -0.02 0.74 16 19 N -0.62 -7.08 3.32 -170.47 -0.57 -7.64 16 20 C 0.57 7.65 7.86 -12.66 -0.10 7.55 16 21 O -0.54 -9.41 15.43 5.27 0.08 -9.33 16 22 C -0.20 -1.99 9.55 -37.81 -0.36 -2.36 16 23 C -0.06 -0.59 6.93 -100.48 -0.70 -1.28 16 24 C -0.11 -1.06 6.99 -27.55 -0.19 -1.26 16 25 C -0.14 -0.98 8.17 -26.18 -0.21 -1.20 16 26 C -0.11 -0.70 7.96 -27.40 -0.22 -0.91 16 27 C 0.11 1.36 6.02 -2.26 -0.01 1.34 16 28 H 0.08 1.02 7.62 -51.93 -0.40 0.63 16 29 H 0.05 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.35 6.37 6.45 -39.29 -0.25 6.12 16 34 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.39 9.85 7.90 -40.82 -0.32 9.53 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.07 0.55 7.71 -51.93 -0.40 0.15 16 39 H 0.08 0.50 7.71 -51.93 -0.40 0.10 16 40 H 0.08 0.45 6.70 -51.93 -0.35 0.10 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.13 0.94 6.73 -52.49 -0.35 0.58 16 43 H 0.09 1.05 7.49 -51.93 -0.39 0.66 16 44 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.84 7.85 -51.93 -0.41 0.44 16 50 H 0.09 1.30 5.85 -51.92 -0.30 1.00 16 LS Contribution 403.47 15.07 6.08 6.08 Total: -1.00 -34.51 403.47 -9.62 -44.13 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -8.16 Total: 13.63 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -2.17 Total: 4.06 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.52 Total: -58.90 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: 0.17 Total: -25.60 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.51 -9.62 -44.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699838365.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.024 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds