Wall clock time and date at job start Tue Mar 31 2020 19:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 110.30276 * 2 1 4 4 N 1.46902 * 109.46626 * 300.69777 * 3 2 1 5 5 C 1.46905 * 110.99800 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47194 * 180.02562 * 5 4 3 7 7 O 1.21290 * 119.99728 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99867 * 180.02562 * 6 5 4 9 9 C 1.37100 * 120.00071 * 180.02562 * 8 6 5 10 10 H 1.08004 * 119.99830 * 359.97438 * 9 8 6 11 11 C 1.38945 * 120.00246 * 179.97438 * 9 8 6 12 12 N 1.31417 * 120.00180 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00115 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47027 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47041 * 120.00089 * 13 11 9 16 16 H 1.48501 * 109.47312 * 240.00031 * 13 11 9 17 17 C 1.54281 * 110.34569 * 122.17020 * 2 1 3 18 18 C 1.54390 * 104.96238 * 118.97868 * 17 2 1 19 19 N 1.48140 * 104.61659 * 23.86821 * 18 17 2 20 20 C 1.34777 * 127.84058 * 140.38567 * 19 18 17 21 21 O 1.21612 * 120.00420 * 179.97438 * 20 19 18 22 22 C 1.47101 * 119.99954 * 359.97438 * 20 19 18 23 23 C 1.32989 * 120.00399 * 179.97438 * 22 20 19 24 24 C 1.51406 * 136.31159 * 359.62318 * 23 22 20 25 25 C 1.53385 * 87.51762 * 206.05802 * 24 23 22 26 26 C 1.51405 * 136.32147 * 179.97438 * 23 22 20 27 27 C 1.48420 * 104.33850 * 320.39035 * 19 18 17 28 28 H 1.08997 * 109.47104 * 59.30360 * 1 2 3 29 29 H 1.09003 * 109.46924 * 179.30131 * 1 2 3 30 30 H 1.08992 * 109.47449 * 299.29894 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.70124 * 3 2 1 32 32 H 1.09000 * 109.47050 * 180.69953 * 3 2 1 33 33 H 1.00904 * 111.00423 * 303.95194 * 4 3 2 34 34 H 1.09002 * 109.47091 * 300.00139 * 5 4 3 35 35 H 1.09001 * 109.46854 * 60.00166 * 5 4 3 36 36 H 0.96999 * 120.00108 * 0.02562 * 8 6 5 37 37 H 0.96994 * 120.00398 * 179.97438 * 12 11 9 38 38 H 1.08994 * 110.34912 * 237.85417 * 17 2 1 39 39 H 1.09000 * 110.34119 * 0.11178 * 17 2 1 40 40 H 1.08998 * 110.40924 * 142.65195 * 18 17 2 41 41 H 1.08998 * 110.40746 * 264.96857 * 18 17 2 42 42 H 1.08002 * 119.99674 * 359.97438 * 22 20 19 43 43 H 1.08999 * 113.56671 * 320.64085 * 24 23 22 44 44 H 1.09001 * 113.56077 * 91.37834 * 24 23 22 45 45 H 1.09000 * 113.96595 * 220.29302 * 25 24 23 46 46 H 1.08995 * 113.59211 * 88.79745 * 25 24 23 47 47 H 1.08999 * 113.56415 * 268.63182 * 26 23 22 48 48 H 1.09006 * 113.55816 * 39.35835 * 26 23 22 49 49 H 1.09000 * 110.45233 * 280.86937 * 27 19 18 50 50 H 1.09008 * 110.49218 * 158.35245 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4350 0.0000 4 7 1.5676 2.1395 -1.1910 5 6 2.0588 3.5235 -1.2250 6 6 1.5329 4.2130 -2.4575 7 8 0.8187 3.6109 -3.2311 8 7 1.8562 5.4988 -2.7001 9 6 1.3773 6.1262 -3.8211 10 1 0.7414 5.5901 -4.5100 11 6 1.7101 7.4519 -4.0709 12 7 2.4835 8.1045 -3.2324 13 14 1.0582 8.3066 -5.5986 14 1 0.2156 7.3607 -6.3735 15 1 0.2428 9.4816 -5.1986 16 1 2.1974 8.7573 -6.4379 17 6 2.0664 -0.7702 1.2245 18 6 2.8825 -1.9399 0.6334 19 7 3.2693 -1.4794 -0.7204 20 6 4.4464 -1.6621 -1.3510 21 8 4.6110 -1.2194 -2.4717 22 6 5.5320 -2.3969 -0.6837 23 6 6.6933 -2.5777 -1.3060 24 6 7.2831 -2.2112 -2.6514 25 6 8.2080 -3.4256 -2.5020 26 6 8.0135 -3.2473 -0.9879 27 6 2.0667 -0.7709 -1.2252 28 1 -0.3633 0.5246 -0.8836 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3634 0.5029 0.8961 31 1 1.7153 1.9502 0.8962 32 1 3.1507 1.4192 -0.0125 33 1 1.8202 1.6456 -2.0338 34 1 1.7136 4.0536 -0.3374 35 1 3.1486 3.5218 -1.2463 36 1 2.4276 5.9802 -2.0816 37 1 2.7162 9.0298 -3.4070 38 1 2.7080 -0.1263 1.8259 39 1 1.2398 -1.1502 1.8249 40 1 3.7693 -2.1286 1.2385 41 1 2.2683 -2.8381 0.5702 42 1 5.3859 -2.7897 0.3118 43 1 6.5766 -2.3025 -3.4764 44 1 7.8119 -1.2581 -2.6503 45 1 9.2295 -3.2482 -2.8384 46 1 7.7827 -4.3489 -2.8951 47 1 8.7424 -2.5782 -0.5307 48 1 7.9059 -4.1884 -0.4485 49 1 1.3242 -1.4859 -1.5796 50 1 2.3384 -0.0776 -2.0213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699838365.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:11 Heat of formation + Delta-G solvation = -49.219791 kcal Electronic energy + Delta-G solvation = -28775.317100 eV Core-core repulsion = 24802.562130 eV Total energy + Delta-G solvation = -3972.754970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.34778 -40.26104 -39.82286 -38.75898 -36.60023 -35.85871 -33.89672 -33.27056 -31.83556 -30.55370 -28.89152 -27.59902 -26.83002 -26.69868 -25.31334 -24.02849 -23.36559 -21.26737 -20.83699 -20.11822 -19.90852 -18.68341 -18.35164 -17.78730 -17.26195 -16.71065 -16.68052 -16.47475 -16.31243 -16.04112 -15.57786 -15.46591 -15.21345 -15.11509 -14.95490 -14.48612 -14.20878 -13.61886 -13.45606 -13.42381 -13.35861 -13.21994 -13.15798 -12.97903 -12.90387 -12.88588 -12.62798 -12.44903 -12.43520 -12.13988 -11.95901 -11.73720 -11.61451 -11.55044 -11.50322 -11.43872 -10.73444 -10.39218 -10.28886 -10.05498 -9.69307 -9.37599 -8.50123 -5.99261 0.32749 1.33941 1.38841 1.53790 1.93013 2.00128 2.24739 2.26680 2.87012 3.16369 3.23974 3.44678 3.52400 3.56459 3.68862 3.79687 3.84643 4.06351 4.21992 4.25578 4.28407 4.30557 4.36655 4.43896 4.47437 4.56766 4.59899 4.69344 4.70642 4.71389 4.79431 4.84988 4.87568 4.87970 4.97363 5.01093 5.05292 5.15766 5.24802 5.31392 5.31623 5.37563 5.38259 5.59889 5.65762 5.84032 6.05542 6.26766 6.55953 6.57539 7.08616 7.14403 7.51173 8.06697 8.67748 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.002423 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.103149 B =11553.261868 C =13371.874497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.063 4.063 3 C 0.075 3.925 4 N -0.675 5.675 5 C 0.065 3.935 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.077 0.923 11 C -0.014 4.014 12 N -0.920 5.920 13 Si 0.995 3.005 14 H -0.274 1.274 15 H -0.267 1.267 16 H -0.270 1.270 17 C -0.117 4.117 18 C 0.098 3.902 19 N -0.622 5.622 20 C 0.554 3.446 21 O -0.598 6.598 22 C -0.204 4.204 23 C -0.071 4.071 24 C -0.126 4.126 25 C -0.133 4.133 26 C -0.090 4.090 27 C 0.107 3.893 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.019 0.981 33 H 0.335 0.665 34 H 0.110 0.890 35 H 0.054 0.946 36 H 0.396 0.604 37 H 0.278 0.722 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.167 0.833 43 H 0.053 0.947 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.118 0.882 48 H 0.100 0.900 49 H 0.081 0.919 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.911 -25.079 16.128 31.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.065 4.065 3 C -0.054 4.054 4 N -0.307 5.307 5 C -0.068 4.068 6 C 0.224 3.776 7 O -0.509 6.509 8 N -0.210 5.210 9 C -0.464 4.464 10 H 0.095 0.905 11 C -0.214 4.214 12 N -0.561 5.561 13 Si 0.818 3.182 14 H -0.199 1.199 15 H -0.192 1.192 16 H -0.195 1.195 17 C -0.156 4.156 18 C -0.023 4.023 19 N -0.354 5.354 20 C 0.347 3.653 21 O -0.481 6.481 22 C -0.224 4.224 23 C -0.073 4.073 24 C -0.163 4.163 25 C -0.170 4.170 26 C -0.126 4.126 27 C -0.016 4.016 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.037 0.963 33 H 0.155 0.845 34 H 0.128 0.872 35 H 0.072 0.928 36 H 0.230 0.770 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.184 0.816 43 H 0.072 0.928 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.136 0.864 48 H 0.119 0.881 49 H 0.099 0.901 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.085 -24.900 15.279 30.313 hybrid contribution 0.701 1.130 -1.272 1.840 sum 8.786 -23.771 14.007 28.956 Atomic orbital electron populations 1.21689 0.91948 1.02009 1.02520 1.21458 0.97170 0.92963 0.94884 1.22122 0.95992 0.93951 0.93319 1.60240 1.63428 1.01093 1.05955 1.21533 0.97674 0.91099 0.96474 1.20851 0.84712 0.82676 0.89326 1.90485 1.42666 1.66260 1.51497 1.41932 1.45476 1.10521 1.23071 1.19704 1.29545 0.95403 1.01728 0.90452 1.26080 0.96714 0.96583 1.01976 1.69679 1.36399 1.12126 1.37933 0.84851 0.78212 0.77892 0.77238 1.19900 1.19236 1.19517 1.22679 1.00854 0.96243 0.95812 1.22733 1.00628 0.97877 0.81097 1.49054 1.12050 1.55216 1.19088 1.18786 0.82075 0.79612 0.84807 1.90792 1.82196 1.53376 1.21702 1.21652 0.92545 1.06290 1.01952 1.23960 0.94924 0.91957 0.96415 1.22363 0.98599 0.99983 0.95392 1.22734 1.00520 0.97331 0.96441 1.22359 0.91683 1.01325 0.97258 1.22524 0.86600 0.95452 0.97001 0.93848 0.91104 0.91256 0.89054 0.96322 0.84538 0.87185 0.92840 0.76983 0.91210 0.89957 0.87080 0.87821 0.88960 0.81565 0.92814 0.88760 0.88707 0.89489 0.86432 0.88134 0.90132 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.09 71.98 0.58 -1.82 16 2 C -0.06 -1.25 0.82 -51.28 -0.04 -1.29 16 3 C 0.07 1.87 4.47 86.31 0.39 2.26 16 4 N -0.67 -23.41 5.38 -517.91 -2.79 -26.19 16 5 C 0.06 2.45 6.17 85.56 0.53 2.98 16 6 C 0.44 22.36 7.82 87.66 0.69 23.05 16 7 O -0.62 -36.85 15.78 -3.06 -0.05 -36.90 16 8 N -0.57 -31.14 5.29 -306.99 -1.62 -32.77 16 9 C -0.33 -19.89 9.68 84.04 0.81 -19.08 16 10 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 11 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 12 N -0.92 -51.28 13.05 21.66 0.28 -51.00 16 13 Si 0.99 44.52 29.55 68.60 2.03 46.55 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 17 C -0.12 -1.35 6.30 31.50 0.20 -1.15 16 18 C 0.10 1.13 6.88 86.54 0.59 1.72 16 19 N -0.62 -13.85 3.32 -811.51 -2.70 -16.54 16 20 C 0.55 15.33 7.86 86.57 0.68 16.01 16 21 O -0.60 -22.85 15.43 -4.07 -0.06 -22.92 16 22 C -0.20 -3.88 9.55 23.43 0.22 -3.66 16 23 C -0.07 -1.30 6.93 -17.17 -0.12 -1.42 16 24 C -0.13 -2.64 6.99 30.06 0.21 -2.43 16 25 C -0.13 -1.67 8.17 30.95 0.25 -1.42 16 26 C -0.09 -0.91 7.96 30.16 0.24 -0.67 16 27 C 0.11 2.69 6.02 86.48 0.52 3.21 16 28 H 0.04 1.15 7.62 -2.39 -0.02 1.13 16 29 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.34 13.20 6.45 -89.69 -0.58 12.62 16 34 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.40 20.41 7.90 -92.71 -0.73 19.67 16 37 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.08 0.88 7.71 -2.39 -0.02 0.86 16 39 H 0.11 0.75 7.71 -2.39 -0.02 0.73 16 40 H 0.10 0.71 6.70 -2.39 -0.02 0.70 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.17 1.80 6.73 -2.91 -0.02 1.78 16 43 H 0.05 1.46 7.49 -2.39 -0.02 1.44 16 44 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 49 H 0.08 1.87 7.85 -2.39 -0.02 1.85 16 50 H 0.04 1.50 5.85 -2.38 -0.01 1.48 16 Total: -1.00 -80.89 403.47 0.96 -79.93 By element: Atomic # 1 Polarization: 44.20 SS G_CDS: -0.36 Total: 43.84 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.22 Total: 15.99 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -6.82 Total: -126.50 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -0.11 Total: -59.82 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -80.89 0.96 -79.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699838365.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.713 kcal (2) G-P(sol) polarization free energy of solvation -80.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds