Wall clock time and date at job start Tue Mar 31 2020 18:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36774 * 125.80450 * 2 1 4 4 C 1.47265 * 126.93971 * 359.97438 * 3 2 1 5 5 O 1.21622 * 119.99917 * 314.45662 * 4 3 2 6 6 N 1.34776 * 119.99520 * 134.45543 * 4 3 2 7 7 C 1.47149 * 120.98615 * 4.12076 * 6 4 3 8 8 C 1.53290 * 108.38892 * 230.51460 * 7 6 4 9 9 O 1.42965 * 109.22077 * 307.70108 * 8 7 6 10 10 C 1.42954 * 114.17106 * 62.57769 * 9 8 7 11 11 H 1.09005 * 109.51435 * 57.34514 * 10 9 8 12 12 C 1.52994 * 109.51622 * 177.44724 * 10 9 8 13 13 N 1.46500 * 109.46998 * 300.00067 * 12 10 9 14 14 C 1.36936 * 120.00234 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00383 * 179.97438 * 14 13 12 17 17 N 1.31625 * 120.00488 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99957 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47174 * 89.99602 * 18 16 14 20 20 H 1.48499 * 109.47534 * 210.00124 * 18 16 14 21 21 H 1.48504 * 109.46924 * 330.00064 * 18 16 14 22 22 C 1.47159 * 120.97717 * 183.84183 * 6 4 3 23 23 C 1.46680 * 106.11513 * 180.24346 * 3 2 1 24 24 C 1.34488 * 106.33566 * 359.74634 * 23 3 2 25 25 N 1.34662 * 125.79834 * 179.79931 * 2 1 3 26 26 C 1.46493 * 124.84926 * 0.02562 * 25 2 1 27 27 C 1.53001 * 109.47051 * 119.72382 * 26 25 2 28 28 C 1.53005 * 109.47199 * 239.71909 * 26 25 2 29 29 H 1.09008 * 109.47494 * 270.20292 * 1 2 3 30 30 H 1.09005 * 109.47453 * 30.19662 * 1 2 3 31 31 H 1.09000 * 109.47513 * 150.19883 * 1 2 3 32 32 H 1.09000 * 109.68210 * 350.24241 * 7 6 4 33 33 H 1.09006 * 109.67647 * 110.78910 * 7 6 4 34 34 H 1.09001 * 109.51232 * 67.61974 * 8 7 6 35 35 H 1.08994 * 109.51642 * 187.77517 * 8 7 6 36 36 H 1.08993 * 109.47453 * 59.99979 * 12 10 9 37 37 H 1.09005 * 109.47327 * 180.02562 * 12 10 9 38 38 H 0.97005 * 120.00214 * 359.97438 * 13 12 10 39 39 H 0.96988 * 119.99982 * 180.02562 * 17 16 14 40 40 H 1.08993 * 109.67859 * 249.21105 * 22 6 4 41 41 H 1.08999 * 109.68045 * 9.76577 * 22 6 4 42 42 H 1.08000 * 126.83760 * 179.73608 * 23 3 2 43 43 H 1.07995 * 125.57640 * 180.02562 * 24 23 3 44 44 H 1.08998 * 109.47633 * 359.72547 * 26 25 2 45 45 H 1.09002 * 109.47476 * 59.99667 * 27 26 25 46 46 H 1.09000 * 109.47328 * 179.97438 * 27 26 25 47 47 H 1.08993 * 109.47092 * 299.99749 * 27 26 25 48 48 H 1.09008 * 109.46641 * 60.00279 * 28 26 25 49 49 H 1.08991 * 109.47266 * 180.02562 * 28 26 25 50 50 H 1.08998 * 109.47349 * 300.00812 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8703 2.5156 -0.0005 5 8 0.9857 2.8773 -0.7528 6 7 2.4508 3.4018 0.8326 7 6 3.5827 3.0092 1.6870 8 6 3.2763 3.4426 3.1250 9 8 2.9246 4.8283 3.1342 10 6 1.7436 5.1374 2.3902 11 1 0.9072 4.5545 2.7761 12 6 1.4315 6.6292 2.5234 13 7 1.2193 6.9595 3.9349 14 6 0.9236 8.2457 4.3001 15 1 0.8473 9.0168 3.5476 16 6 0.7220 8.5587 5.6374 17 7 0.4384 9.7951 5.9885 18 14 0.8533 7.2250 6.9388 19 1 2.2540 7.1445 7.4256 20 1 -0.0473 7.5504 8.0737 21 1 0.4577 5.9197 6.3514 22 6 1.9752 4.7923 0.9103 23 6 3.6882 0.6151 -0.0060 24 6 3.6095 -0.7275 -0.0033 25 7 2.2947 -1.0922 0.0038 26 6 1.8092 -2.4744 0.0081 27 6 2.3155 -3.1966 -1.2421 28 6 2.3260 -3.1926 1.2564 29 1 -0.3634 0.0036 1.0277 30 1 -0.3634 0.8882 -0.5169 31 1 -0.3634 -0.8917 -0.5107 32 1 3.7133 1.9277 1.6494 33 1 4.4917 3.5014 1.3410 34 1 2.4455 2.8536 3.5136 35 1 4.1569 3.2864 3.7479 36 1 2.2673 7.2114 2.1358 37 1 0.5307 6.8640 1.9563 38 1 1.2874 6.2670 4.6107 39 1 0.2979 10.0137 6.9229 40 1 2.7251 5.4608 0.4875 41 1 1.0407 4.8920 0.3583 42 1 4.5890 1.2107 -0.0116 43 1 4.4496 -1.4061 -0.0060 44 1 0.7192 -2.4767 0.0127 45 1 3.4055 -3.1943 -1.2467 46 1 1.9547 -4.2251 -1.2387 47 1 1.9474 -2.6850 -2.1313 48 1 1.9653 -2.6780 2.1471 49 1 1.9652 -4.2210 1.2594 50 1 3.4160 -3.1902 1.2518 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700158379.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:53 Heat of formation + Delta-G solvation = -9.420495 kcal Electronic energy + Delta-G solvation = -29623.702756 eV Core-core repulsion = 25652.673613 eV Total energy + Delta-G solvation = -3971.029143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.85779 -39.97813 -38.12681 -35.75452 -35.04354 -34.38102 -32.20001 -31.98260 -30.72917 -30.01700 -28.21615 -27.94404 -26.79166 -25.60158 -23.46949 -23.13481 -22.54281 -21.40655 -20.72205 -19.46582 -18.53466 -17.64400 -17.39096 -16.69312 -16.45076 -15.93753 -15.58533 -15.21670 -15.01215 -14.90589 -14.43453 -14.31651 -14.10267 -13.92525 -13.62918 -13.44020 -13.20268 -13.05854 -12.92999 -12.86540 -12.73733 -12.61949 -12.57593 -12.39488 -12.10121 -11.84278 -11.81752 -11.65893 -11.61836 -11.12943 -10.97510 -10.79540 -10.39851 -10.10078 -9.91181 -9.79010 -9.51272 -8.83105 -8.82736 -8.49414 -8.33282 -7.14513 -5.69120 -3.03648 1.69098 2.18930 2.37971 2.94304 3.21535 3.45140 3.49799 3.51603 3.94176 3.97029 4.28257 4.32403 4.44286 4.56278 4.67622 4.71410 4.77273 4.86783 4.94697 4.95955 5.02964 5.05874 5.13438 5.14353 5.19461 5.27956 5.32375 5.34289 5.42513 5.49546 5.53528 5.60776 5.65944 5.66299 5.72730 5.75171 5.81667 5.89481 5.93470 6.05087 6.41753 6.52959 6.54891 6.68004 6.82751 6.96981 7.41632 7.42237 8.06906 8.23855 8.49865 9.29649 10.02077 10.22954 11.49307 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.002461 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.378967 B =11373.010467 C =11741.665918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.094 3.906 3 C -0.227 4.227 4 C 0.596 3.404 5 O -0.546 6.546 6 N -0.608 5.608 7 C 0.068 3.932 8 C 0.045 3.955 9 O -0.363 6.363 10 C 0.071 3.929 11 H 0.061 0.939 12 C 0.168 3.832 13 N -0.750 5.750 14 C -0.241 4.241 15 H 0.091 0.909 16 C 0.003 3.997 17 N -0.936 5.936 18 Si 0.887 3.113 19 H -0.284 1.284 20 H -0.293 1.293 21 H -0.278 1.278 22 C 0.088 3.912 23 C -0.170 4.170 24 C -0.011 4.011 25 N -0.436 5.436 26 C 0.120 3.880 27 C -0.163 4.163 28 C -0.162 4.162 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.037 0.963 37 H 0.044 0.956 38 H 0.365 0.635 39 H 0.259 0.741 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.101 0.899 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.937 -31.973 -13.841 35.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.022 4.022 3 C -0.237 4.237 4 C 0.386 3.614 5 O -0.425 6.425 6 N -0.341 5.341 7 C -0.055 4.055 8 C -0.033 4.033 9 O -0.281 6.281 10 C 0.012 3.988 11 H 0.079 0.921 12 C 0.040 3.960 13 N -0.396 5.396 14 C -0.370 4.370 15 H 0.108 0.892 16 C -0.193 4.193 17 N -0.584 5.584 18 Si 0.718 3.282 19 H -0.210 1.210 20 H -0.219 1.219 21 H -0.205 1.205 22 C -0.035 4.035 23 C -0.194 4.194 24 C -0.137 4.137 25 N -0.113 5.113 26 C 0.018 3.982 27 C -0.221 4.221 28 C -0.220 4.220 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.198 0.802 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.120 0.880 42 H 0.163 0.837 43 H 0.181 0.819 44 H 0.119 0.881 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.426 -31.739 -14.162 35.345 hybrid contribution 0.225 -1.129 0.953 1.494 sum 6.651 -32.868 -13.209 36.042 Atomic orbital electron populations 1.20546 0.87575 1.04305 1.03155 1.20135 0.93467 0.85110 1.03468 1.19993 0.93593 0.91653 1.18446 1.17461 0.80756 0.84131 0.79076 1.90752 1.31972 1.79688 1.40063 1.47981 1.34085 1.10944 1.41116 1.22685 0.89092 1.02581 0.91126 1.22941 1.00989 0.84077 0.95299 1.88118 1.44421 1.23268 1.72273 1.22923 0.87485 0.98799 0.89612 0.92058 1.20613 0.98568 0.88798 0.88034 1.42556 1.86665 1.08414 1.01945 1.19066 1.39615 0.85069 0.93295 0.89157 1.24655 1.01834 0.96022 0.96763 1.69707 1.55101 1.17051 1.16533 0.86494 0.77640 0.81969 0.82123 1.21034 1.21912 1.20453 1.22374 1.02135 0.81350 0.97673 1.21957 0.95437 0.93327 1.08718 1.21530 0.85693 0.95857 1.10639 1.43790 1.05780 1.05432 1.56252 1.21520 1.00492 0.79194 0.96994 1.22176 1.02387 1.00759 0.96748 1.22168 1.02334 1.00792 0.96713 0.90692 0.88468 0.91538 0.87679 0.90733 0.93123 0.87982 0.94464 0.93819 0.80244 0.93145 0.90360 0.87997 0.83651 0.81914 0.88142 0.91591 0.90566 0.91633 0.91601 0.90563 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 9.69 36.00 0.35 -0.54 16 2 C 0.09 0.97 6.89 -81.88 -0.56 0.41 16 3 C -0.23 -2.74 5.34 -103.35 -0.55 -3.29 16 4 C 0.60 8.81 7.40 -12.59 -0.09 8.72 16 5 O -0.55 -9.69 15.38 5.26 0.08 -9.61 16 6 N -0.61 -8.42 3.01 -173.34 -0.52 -8.94 16 7 C 0.07 0.77 6.00 -3.54 -0.02 0.74 16 8 C 0.04 0.57 6.99 37.31 0.26 0.83 16 9 O -0.36 -6.27 10.13 -35.23 -0.36 -6.62 16 10 C 0.07 1.21 2.88 -26.36 -0.08 1.13 16 11 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 12 C 0.17 3.42 5.96 -4.04 -0.02 3.40 16 13 N -0.75 -18.93 5.30 -59.91 -0.32 -19.25 16 14 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 15 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 16 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 17 N -0.94 -30.17 13.97 55.49 0.78 -29.39 16 18 Si 0.89 23.08 27.74 -169.99 -4.71 18.37 16 19 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 21 H -0.28 -6.88 6.52 56.52 0.37 -6.51 16 22 C 0.09 1.31 5.94 -3.31 -0.02 1.29 16 23 C -0.17 -1.60 8.69 -37.50 -0.33 -1.93 16 24 C -0.01 -0.08 10.17 -16.82 -0.17 -0.25 16 25 N -0.44 -3.38 2.57 -105.46 -0.27 -3.65 16 26 C 0.12 0.58 3.44 -67.93 -0.23 0.35 16 27 C -0.16 -0.61 9.22 37.16 0.34 -0.27 16 28 C -0.16 -0.61 9.23 37.16 0.34 -0.26 16 29 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.10 1.10 6.89 -51.93 -0.36 0.74 16 31 H 0.07 0.44 6.96 -51.93 -0.36 0.08 16 32 H 0.11 1.01 4.57 -51.93 -0.24 0.77 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.36 9.15 5.41 -40.82 -0.22 8.93 16 39 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.10 1.58 7.11 -51.93 -0.37 1.21 16 42 H 0.15 1.16 7.53 -52.49 -0.40 0.77 16 43 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.10 0.43 6.47 -51.93 -0.34 0.09 16 45 H 0.07 0.24 7.88 -51.93 -0.41 -0.17 16 46 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 49 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 50 H 0.07 0.24 7.88 -51.93 -0.41 -0.17 16 LS Contribution 395.46 15.07 5.96 5.96 Total: -1.00 -36.71 395.46 -8.59 -45.30 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -8.18 Total: 4.77 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.04 Total: 3.07 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.34 Total: -61.23 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.28 Total: -16.23 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.71 Total: 18.37 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.71 -8.59 -45.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700158379.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.876 kcal (2) G-P(sol) polarization free energy of solvation -36.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds