Wall clock time and date at job start Tue Mar 31 2020 18:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36774 * 125.80450 * 2 1 4 4 C 1.47265 * 126.93971 * 359.97438 * 3 2 1 5 5 O 1.21622 * 119.99917 * 314.45662 * 4 3 2 6 6 N 1.34776 * 119.99520 * 134.45543 * 4 3 2 7 7 C 1.47149 * 120.98615 * 4.12076 * 6 4 3 8 8 C 1.53290 * 108.38892 * 230.51460 * 7 6 4 9 9 O 1.42965 * 109.22077 * 307.70108 * 8 7 6 10 10 C 1.42954 * 114.17106 * 62.57769 * 9 8 7 11 11 H 1.09005 * 109.51435 * 57.34514 * 10 9 8 12 12 C 1.52994 * 109.51622 * 177.44724 * 10 9 8 13 13 N 1.46500 * 109.46998 * 300.00067 * 12 10 9 14 14 C 1.36936 * 120.00234 * 180.02562 * 13 12 10 15 15 H 1.08004 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00383 * 179.97438 * 14 13 12 17 17 N 1.31625 * 120.00488 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99957 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47174 * 89.99602 * 18 16 14 20 20 H 1.48499 * 109.47534 * 210.00124 * 18 16 14 21 21 H 1.48504 * 109.46924 * 330.00064 * 18 16 14 22 22 C 1.47159 * 120.97717 * 183.84183 * 6 4 3 23 23 C 1.46680 * 106.11513 * 180.24346 * 3 2 1 24 24 C 1.34488 * 106.33566 * 359.74634 * 23 3 2 25 25 N 1.34662 * 125.79834 * 179.79931 * 2 1 3 26 26 C 1.46493 * 124.84926 * 0.02562 * 25 2 1 27 27 C 1.53001 * 109.47051 * 119.72382 * 26 25 2 28 28 C 1.53005 * 109.47199 * 239.71909 * 26 25 2 29 29 H 1.09008 * 109.47494 * 270.20292 * 1 2 3 30 30 H 1.09005 * 109.47453 * 30.19662 * 1 2 3 31 31 H 1.09000 * 109.47513 * 150.19883 * 1 2 3 32 32 H 1.09000 * 109.68210 * 350.24241 * 7 6 4 33 33 H 1.09006 * 109.67647 * 110.78910 * 7 6 4 34 34 H 1.09001 * 109.51232 * 67.61974 * 8 7 6 35 35 H 1.08994 * 109.51642 * 187.77517 * 8 7 6 36 36 H 1.08993 * 109.47453 * 59.99979 * 12 10 9 37 37 H 1.09005 * 109.47327 * 180.02562 * 12 10 9 38 38 H 0.97005 * 120.00214 * 359.97438 * 13 12 10 39 39 H 0.96988 * 119.99982 * 180.02562 * 17 16 14 40 40 H 1.08993 * 109.67859 * 249.21105 * 22 6 4 41 41 H 1.08999 * 109.68045 * 9.76577 * 22 6 4 42 42 H 1.08000 * 126.83760 * 179.73608 * 23 3 2 43 43 H 1.07995 * 125.57640 * 180.02562 * 24 23 3 44 44 H 1.08998 * 109.47633 * 359.72547 * 26 25 2 45 45 H 1.09002 * 109.47476 * 59.99667 * 27 26 25 46 46 H 1.09000 * 109.47328 * 179.97438 * 27 26 25 47 47 H 1.08993 * 109.47092 * 299.99749 * 27 26 25 48 48 H 1.09008 * 109.46641 * 60.00279 * 28 26 25 49 49 H 1.08991 * 109.47266 * 180.02562 * 28 26 25 50 50 H 1.08998 * 109.47349 * 300.00812 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8703 2.5156 -0.0005 5 8 0.9857 2.8773 -0.7528 6 7 2.4508 3.4018 0.8326 7 6 3.5827 3.0092 1.6870 8 6 3.2763 3.4426 3.1250 9 8 2.9246 4.8283 3.1342 10 6 1.7436 5.1374 2.3902 11 1 0.9072 4.5545 2.7761 12 6 1.4315 6.6292 2.5234 13 7 1.2193 6.9595 3.9349 14 6 0.9236 8.2457 4.3001 15 1 0.8473 9.0168 3.5476 16 6 0.7220 8.5587 5.6374 17 7 0.4384 9.7951 5.9885 18 14 0.8533 7.2250 6.9388 19 1 2.2540 7.1445 7.4256 20 1 -0.0473 7.5504 8.0737 21 1 0.4577 5.9197 6.3514 22 6 1.9752 4.7923 0.9103 23 6 3.6882 0.6151 -0.0060 24 6 3.6095 -0.7275 -0.0033 25 7 2.2947 -1.0922 0.0038 26 6 1.8092 -2.4744 0.0081 27 6 2.3155 -3.1966 -1.2421 28 6 2.3260 -3.1926 1.2564 29 1 -0.3634 0.0036 1.0277 30 1 -0.3634 0.8882 -0.5169 31 1 -0.3634 -0.8917 -0.5107 32 1 3.7133 1.9277 1.6494 33 1 4.4917 3.5014 1.3410 34 1 2.4455 2.8536 3.5136 35 1 4.1569 3.2864 3.7479 36 1 2.2673 7.2114 2.1358 37 1 0.5307 6.8640 1.9563 38 1 1.2874 6.2670 4.6107 39 1 0.2979 10.0137 6.9229 40 1 2.7251 5.4608 0.4875 41 1 1.0407 4.8920 0.3583 42 1 4.5890 1.2107 -0.0116 43 1 4.4496 -1.4061 -0.0060 44 1 0.7192 -2.4767 0.0127 45 1 3.4055 -3.1943 -1.2467 46 1 1.9547 -4.2251 -1.2387 47 1 1.9474 -2.6850 -2.1313 48 1 1.9653 -2.6780 2.1471 49 1 1.9652 -4.2210 1.2594 50 1 3.4160 -3.1902 1.2518 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700158379.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:52 Heat of formation + Delta-G solvation = -33.942599 kcal Electronic energy + Delta-G solvation = -29624.766114 eV Core-core repulsion = 25652.673613 eV Total energy + Delta-G solvation = -3972.092501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.53602 -41.08496 -39.33949 -36.81580 -36.21075 -35.67485 -34.01083 -32.67264 -32.37849 -30.82078 -29.41946 -28.19376 -27.88296 -26.80841 -24.80087 -24.21961 -23.37446 -22.87174 -21.91517 -20.23277 -19.74623 -19.31711 -18.14939 -17.73931 -17.51201 -17.08170 -16.65008 -16.43677 -16.14601 -15.93297 -15.70544 -15.52175 -15.12813 -14.81926 -14.59961 -14.51171 -14.31316 -14.15200 -14.10649 -13.79114 -13.68467 -13.61756 -13.40724 -13.16325 -13.02350 -12.89694 -12.83975 -12.61627 -12.49442 -12.32753 -12.18550 -12.04940 -11.96565 -11.84024 -11.64829 -11.21604 -10.99811 -10.90967 -9.67713 -9.43143 -9.31471 -9.08318 -8.02756 -5.36270 0.85485 1.37190 1.41528 1.48505 1.51398 1.67549 2.04052 2.24504 2.48752 2.72054 3.28614 3.40494 3.61467 3.73654 3.76160 3.87712 3.94904 3.97373 4.01662 4.08629 4.09675 4.15656 4.26504 4.34900 4.44435 4.50362 4.53305 4.59486 4.67159 4.67662 4.72645 4.79679 4.82617 4.84184 4.86867 4.92658 4.97473 5.04506 5.05579 5.18059 5.23239 5.24516 5.36058 5.73569 5.80240 6.14288 6.17213 6.22082 6.34907 6.43433 7.06433 7.14827 7.81693 8.02498 9.18566 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.002461 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.378967 B =11373.010467 C =11741.665918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.085 3.915 3 C -0.260 4.260 4 C 0.592 3.408 5 O -0.588 6.588 6 N -0.609 5.609 7 C 0.073 3.927 8 C 0.040 3.960 9 O -0.387 6.387 10 C 0.087 3.913 11 H 0.055 0.945 12 C 0.163 3.837 13 N -0.753 5.753 14 C -0.235 4.235 15 H 0.059 0.941 16 C -0.064 4.064 17 N -0.982 5.982 18 Si 0.959 3.041 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.258 1.258 22 C 0.095 3.905 23 C -0.184 4.184 24 C 0.003 3.997 25 N -0.429 5.429 26 C 0.113 3.887 27 C -0.159 4.159 28 C -0.158 4.158 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.130 0.870 36 H 0.036 0.964 37 H 0.048 0.952 38 H 0.367 0.633 39 H 0.259 0.741 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.158 0.842 43 H 0.197 0.803 44 H 0.105 0.895 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.050 0.950 48 H 0.052 0.948 49 H 0.094 0.906 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.616 -36.282 -13.531 39.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.033 4.033 3 C -0.270 4.270 4 C 0.383 3.617 5 O -0.470 6.470 6 N -0.341 5.341 7 C -0.048 4.048 8 C -0.037 4.037 9 O -0.306 6.306 10 C 0.028 3.972 11 H 0.073 0.927 12 C 0.037 3.963 13 N -0.399 5.399 14 C -0.366 4.366 15 H 0.077 0.923 16 C -0.256 4.256 17 N -0.633 5.633 18 Si 0.786 3.214 19 H -0.203 1.203 20 H -0.219 1.219 21 H -0.183 1.183 22 C -0.029 4.029 23 C -0.207 4.207 24 C -0.124 4.124 25 N -0.105 5.105 26 C 0.013 3.987 27 C -0.216 4.216 28 C -0.215 4.215 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.148 0.852 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.200 0.800 39 H 0.068 0.932 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.175 0.825 43 H 0.214 0.786 44 H 0.123 0.877 45 H 0.089 0.911 46 H 0.114 0.886 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.113 0.887 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.138 -36.109 -13.876 39.530 hybrid contribution -0.276 0.169 0.755 0.822 sum 7.862 -35.940 -13.121 39.060 Atomic orbital electron populations 1.20499 0.87321 1.04101 1.03389 1.20265 0.93972 0.85713 1.03327 1.19974 0.95516 0.90392 1.21125 1.17964 0.80013 0.85302 0.78399 1.90717 1.33889 1.80551 1.41819 1.48067 1.34601 1.10177 1.41297 1.22821 0.88385 1.03980 0.89662 1.23237 1.02028 0.81728 0.96739 1.88064 1.43985 1.26148 1.72419 1.22568 0.87709 0.96044 0.90909 0.92666 1.20746 0.98600 0.91481 0.85514 1.42540 1.86524 1.06810 1.03979 1.19056 1.38529 0.86204 0.92833 0.92266 1.25505 1.02235 0.98561 0.99261 1.69882 1.56864 1.19493 1.17035 0.85347 0.77742 0.79562 0.78733 1.20326 1.21883 1.18270 1.22149 1.02039 0.82662 0.96020 1.22123 0.94561 0.94275 1.09763 1.22036 0.86315 0.95764 1.08252 1.44043 1.05695 1.05988 1.54759 1.21811 1.00986 0.77701 0.98238 1.22161 1.02675 1.01460 0.95348 1.22147 1.02647 1.01423 0.95301 0.90189 0.91265 0.89129 0.85615 0.89489 0.93209 0.85241 0.94640 0.93434 0.79957 0.93250 0.89752 0.89036 0.82488 0.78636 0.87709 0.91088 0.88632 0.93036 0.92837 0.88743 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 9.69 71.24 0.69 -1.01 16 2 C 0.08 1.66 6.89 41.78 0.29 1.95 16 3 C -0.26 -6.05 5.34 -19.04 -0.10 -6.16 16 4 C 0.59 17.60 7.40 86.62 0.64 18.24 16 5 O -0.59 -21.70 15.38 -4.10 -0.06 -21.76 16 6 N -0.61 -16.51 3.01 -820.59 -2.47 -18.99 16 7 C 0.07 1.49 6.00 86.35 0.52 2.01 16 8 C 0.04 0.92 6.99 72.08 0.50 1.42 16 9 O -0.39 -12.83 10.13 -148.98 -1.51 -14.34 16 10 C 0.09 2.94 2.88 30.83 0.09 3.03 16 11 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 12 C 0.16 6.73 5.96 86.38 0.51 7.24 16 13 N -0.75 -37.96 5.30 -343.46 -1.82 -39.78 16 14 C -0.24 -14.13 10.47 84.03 0.88 -13.25 16 15 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 16 C -0.06 -3.94 5.50 84.86 0.47 -3.47 16 17 N -0.98 -64.75 13.97 21.65 0.30 -64.45 16 18 Si 0.96 47.68 27.74 68.60 1.90 49.58 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 20 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 21 H -0.26 -11.81 6.52 99.48 0.65 -11.16 16 22 C 0.09 2.85 5.94 86.49 0.51 3.37 16 23 C -0.18 -3.03 8.69 23.62 0.21 -2.82 16 24 C 0.00 0.04 10.17 83.12 0.85 0.88 16 25 N -0.43 -5.59 2.57 -487.58 -1.25 -6.84 16 26 C 0.11 0.76 3.44 44.99 0.16 0.91 16 27 C -0.16 -0.69 9.22 71.98 0.66 -0.02 16 28 C -0.16 -0.64 9.23 71.98 0.66 0.03 16 29 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.07 1.64 6.89 -2.38 -0.02 1.62 16 31 H 0.09 1.08 6.96 -2.39 -0.02 1.07 16 32 H 0.13 2.08 4.57 -2.39 -0.01 2.07 16 33 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.37 17.99 5.41 -92.70 -0.50 17.49 16 39 H 0.26 16.16 8.31 -92.72 -0.77 15.39 16 40 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.09 2.94 7.11 -2.39 -0.02 2.92 16 42 H 0.16 2.09 7.53 -2.91 -0.02 2.07 16 43 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 44 H 0.10 0.61 6.47 -2.39 -0.02 0.60 16 45 H 0.07 0.25 7.88 -2.39 -0.02 0.23 16 46 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 47 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 49 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 50 H 0.07 0.23 7.88 -2.39 -0.02 0.21 16 Total: -1.00 -81.66 395.46 3.00 -78.66 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.37 Total: 25.57 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 7.54 Total: 12.34 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -5.24 Total: -130.05 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.57 Total: -36.10 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.90 Total: 49.58 kcal Total: -81.66 3.00 -78.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700158379.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.720 kcal (2) G-P(sol) polarization free energy of solvation -81.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds