Wall clock time and date at job start Tue Mar 31 2020 18:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34478 * 125.57164 * 2 1 4 4 C 1.46685 * 106.33276 * 179.86807 * 3 2 1 5 5 C 1.47268 * 126.94418 * 180.11724 * 4 3 2 6 6 O 1.21622 * 119.99996 * 180.33323 * 5 4 3 7 7 N 1.34777 * 119.99799 * 0.33107 * 5 4 3 8 8 C 1.46497 * 119.99920 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47364 * 180.02562 * 8 7 5 10 10 H 1.09010 * 109.47184 * 65.00001 * 9 8 7 11 11 C 1.52995 * 109.47431 * 184.99996 * 9 8 7 12 12 O 1.42899 * 109.47101 * 55.00065 * 11 9 8 13 13 N 1.46503 * 109.46991 * 305.00328 * 9 8 7 14 14 C 1.36940 * 119.99923 * 155.00023 * 13 9 8 15 15 H 1.08001 * 119.99647 * 359.97438 * 14 13 9 16 16 C 1.38812 * 119.99824 * 179.97438 * 14 13 9 17 17 N 1.31617 * 119.99970 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99957 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47083 * 90.00105 * 18 16 14 20 20 H 1.48500 * 109.47083 * 210.00052 * 18 16 14 21 21 H 1.48504 * 109.47147 * 330.00141 * 18 16 14 22 22 C 1.36770 * 106.11727 * 0.39597 * 4 3 2 23 23 C 1.50694 * 125.80485 * 179.79616 * 22 4 3 24 24 N 1.34659 * 108.39128 * 359.76227 * 22 4 3 25 25 C 1.46506 * 124.84664 * 180.02562 * 24 22 4 26 26 C 1.52995 * 109.46944 * 270.01855 * 25 24 22 27 27 C 1.53001 * 117.49823 * 243.61929 * 26 25 24 28 28 C 1.52997 * 60.00407 * 252.51493 * 27 26 25 29 29 H 1.09001 * 109.46953 * 269.68908 * 1 2 3 30 30 H 1.09000 * 109.47318 * 29.68506 * 1 2 3 31 31 H 1.09000 * 109.47161 * 149.69136 * 1 2 3 32 32 H 1.08005 * 126.83402 * 0.02562 * 3 2 1 33 33 H 0.97002 * 120.00258 * 0.02562 * 7 5 4 34 34 H 1.09003 * 109.47507 * 300.00379 * 8 7 5 35 35 H 1.09000 * 109.47413 * 60.00171 * 8 7 5 36 36 H 1.08999 * 109.47482 * 174.99900 * 11 9 8 37 37 H 1.09006 * 109.47339 * 295.00355 * 11 9 8 38 38 H 0.96701 * 113.99965 * 180.02562 * 12 11 9 39 39 H 0.96993 * 119.99840 * 334.99627 * 13 9 8 40 40 H 0.97001 * 120.00176 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.47191 * 269.95462 * 23 22 4 42 42 H 1.08998 * 109.47497 * 29.95781 * 23 22 4 43 43 H 1.09004 * 109.47368 * 149.95765 * 23 22 4 44 44 H 1.08997 * 109.47268 * 30.02469 * 25 24 22 45 45 H 1.09007 * 109.46612 * 150.02253 * 25 24 22 46 46 H 1.08999 * 115.55120 * 29.33329 * 26 25 24 47 47 H 1.09002 * 117.50206 * 0.02562 * 27 26 25 48 48 H 1.09010 * 117.49210 * 145.02390 * 27 26 25 49 49 H 1.08996 * 117.49874 * 252.51475 * 28 27 26 50 50 H 1.08997 * 117.49766 * 107.48961 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2893 1.0938 0.0000 4 6 3.6743 0.6105 0.0032 5 6 4.8978 1.4301 0.0068 6 8 5.9892 0.8935 0.0032 7 7 4.8080 2.7749 0.0142 8 6 6.0251 3.5902 0.0183 9 6 5.6461 5.0724 0.0271 10 1 5.1357 5.3115 0.9602 11 6 6.9118 5.9233 -0.0943 12 8 7.6413 5.5287 -1.2580 13 7 4.7569 5.3558 -1.1023 14 6 3.8920 6.4158 -1.0436 15 1 3.8650 7.0426 -0.1645 16 6 3.0499 6.6845 -2.1139 17 7 2.2182 7.7030 -2.0572 18 14 3.0972 5.6007 -3.6345 19 1 2.1316 4.4836 -3.4764 20 1 2.7317 6.4057 -4.8277 21 1 4.4658 5.0511 -3.8084 22 6 3.5998 -0.7552 -0.0041 23 6 4.7722 -1.7020 -0.0085 24 7 2.3008 -1.1098 -0.0061 25 6 1.8099 -2.4902 -0.0130 26 6 1.6397 -2.9636 -1.4579 27 6 0.2249 -3.3115 -1.9252 28 6 1.2451 -4.4251 -1.6805 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3634 0.8928 -0.5089 31 1 -0.3633 -0.8872 -0.5186 32 1 1.9629 2.1234 0.0004 33 1 3.9375 3.2029 0.0174 34 1 6.6133 3.3607 0.9069 35 1 6.6128 3.3704 -0.8730 36 1 6.6363 6.9747 -0.1774 37 1 7.5327 5.7792 0.7899 38 1 8.4580 6.0272 -1.3980 39 1 4.7810 4.7926 -1.8916 40 1 1.6300 7.8911 -2.8053 41 1 5.0549 -1.9254 -1.0372 42 1 5.6140 -1.2404 0.5076 43 1 4.4956 -2.6251 0.5008 44 1 2.5264 -3.1332 0.4981 45 1 0.8493 -2.5367 0.5002 46 1 2.3122 -2.5076 -2.1844 47 1 -0.5846 -3.2027 -1.2035 48 1 -0.0335 -3.0841 -2.9596 49 1 1.6579 -4.9303 -2.5537 50 1 1.1069 -5.0492 -0.7977 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700825316.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:59 Heat of formation + Delta-G solvation = -7.202971 kcal Electronic energy + Delta-G solvation = -29432.041876 eV Core-core repulsion = 25461.108892 eV Total energy + Delta-G solvation = -3970.932984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.50791 -38.89898 -37.75039 -37.07257 -34.89621 -33.46873 -32.69247 -32.42082 -31.36612 -29.20018 -28.85511 -27.14561 -25.39216 -24.36476 -23.22015 -22.86247 -21.80046 -21.17686 -20.06186 -19.73935 -18.72249 -17.69750 -16.90996 -16.78930 -16.01966 -15.85279 -15.45373 -15.29243 -14.86514 -14.48845 -14.23656 -13.98736 -13.82107 -13.51666 -13.31268 -13.28276 -12.94844 -12.89375 -12.77903 -12.66237 -12.51552 -12.44020 -12.27976 -12.21645 -11.96952 -11.64183 -11.45202 -11.34174 -10.92774 -10.87871 -10.80909 -10.60815 -10.50340 -10.03703 -9.59610 -9.46651 -9.34739 -8.94047 -8.63733 -8.37540 -7.86956 -7.28230 -5.77906 -3.13341 1.91582 2.47286 2.66721 3.29878 3.41801 3.48987 3.51793 3.86502 3.93712 4.17695 4.33328 4.43512 4.61681 4.63555 4.75583 4.84245 4.86968 4.89135 5.04683 5.13792 5.18154 5.27827 5.29491 5.41452 5.42748 5.46791 5.53570 5.55793 5.62526 5.63481 5.65637 5.78085 5.81859 5.91206 6.01168 6.01525 6.02412 6.04400 6.28851 6.42744 6.47430 6.73371 6.92303 7.04325 7.17457 7.29398 7.96440 8.14314 8.19119 8.41306 8.81164 9.20096 9.93000 10.13718 11.39861 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011839 B = 0.003266 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.572802 B = 8570.283217 C =10016.655641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.010 3.990 3 C -0.160 4.160 4 C -0.228 4.228 5 C 0.588 3.412 6 O -0.565 6.565 7 N -0.714 5.714 8 C 0.118 3.882 9 C 0.171 3.829 10 H 0.074 0.926 11 C 0.060 3.940 12 O -0.564 6.564 13 N -0.738 5.738 14 C -0.247 4.247 15 H 0.090 0.910 16 C 0.010 3.990 17 N -0.932 5.932 18 Si 0.879 3.121 19 H -0.283 1.283 20 H -0.293 1.293 21 H -0.274 1.274 22 C 0.100 3.900 23 C -0.089 4.089 24 N -0.437 5.437 25 C 0.132 3.868 26 C -0.175 4.175 27 C -0.175 4.175 28 C -0.171 4.171 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.148 0.852 33 H 0.408 0.592 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.030 0.970 38 H 0.365 0.635 39 H 0.366 0.634 40 H 0.259 0.741 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.112 0.888 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 -22.459 5.676 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 C -0.184 4.184 4 C -0.238 4.238 5 C 0.376 3.624 6 O -0.446 6.446 7 N -0.365 5.365 8 C -0.006 4.006 9 C 0.061 3.939 10 H 0.092 0.908 11 C -0.022 4.022 12 O -0.368 6.368 13 N -0.381 5.381 14 C -0.376 4.376 15 H 0.108 0.892 16 C -0.186 4.186 17 N -0.580 5.580 18 Si 0.709 3.291 19 H -0.210 1.210 20 H -0.219 1.219 21 H -0.200 1.200 22 C -0.016 4.016 23 C -0.146 4.146 24 N -0.114 5.114 25 C 0.010 3.990 26 C -0.194 4.194 27 C -0.211 4.211 28 C -0.208 4.208 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.166 0.834 33 H 0.244 0.756 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.210 0.790 39 H 0.200 0.800 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.130 0.870 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.314 -23.329 5.698 24.050 hybrid contribution -0.060 0.183 -1.220 1.235 sum -1.375 -23.146 4.478 23.615 Atomic orbital electron populations 1.20332 0.88078 1.03359 1.02362 1.20132 0.93415 0.85360 1.10752 1.21932 0.90945 0.97961 1.07525 1.20152 0.93098 0.92105 1.18458 1.17332 0.87545 0.81825 0.75648 1.90677 1.28708 1.72696 1.52538 1.45796 1.10753 1.05516 1.74395 1.21532 0.86624 0.90379 1.02074 1.20572 0.89571 0.90776 0.93022 0.90836 1.22998 0.93561 0.99649 0.85963 1.86538 1.39243 1.63936 1.47038 1.42737 1.43909 1.35131 1.16335 1.19055 1.11475 1.04506 1.02605 0.89193 1.24615 0.98429 0.97757 0.97806 1.69702 1.26299 1.29856 1.32124 0.86618 0.77977 0.80417 0.84075 1.20966 1.21902 1.19956 1.20194 0.84504 0.93985 1.02876 1.20516 0.94794 0.96179 1.03130 1.43469 1.04997 1.05675 1.57267 1.21390 1.01238 0.80765 0.95564 1.22684 1.00037 0.99132 0.97500 1.23081 0.92191 1.02989 1.02883 1.22968 1.03454 0.90715 1.03664 0.91296 0.89894 0.91911 0.83418 0.75583 0.91914 0.90827 0.92874 0.95153 0.79004 0.80030 0.93079 0.90819 0.88127 0.92368 0.88818 0.89091 0.87024 0.88499 0.88466 0.88350 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.81 36.01 0.35 -0.44 16 2 C 0.01 0.13 6.85 -81.87 -0.56 -0.43 16 3 C -0.16 -2.43 10.45 -37.50 -0.39 -2.82 16 4 C -0.23 -3.78 6.29 -103.35 -0.65 -4.43 16 5 C 0.59 10.94 7.81 -12.59 -0.10 10.84 16 6 O -0.56 -11.50 14.81 5.26 0.08 -11.42 16 7 N -0.71 -13.02 5.38 -61.44 -0.33 -13.35 16 8 C 0.12 2.15 5.12 -4.04 -0.02 2.13 16 9 C 0.17 3.27 2.84 -67.93 -0.19 3.08 16 10 H 0.07 1.37 8.08 -51.92 -0.42 0.95 16 11 C 0.06 1.03 6.86 37.16 0.25 1.28 16 12 O -0.56 -9.89 12.64 -35.23 -0.45 -10.34 16 13 N -0.74 -17.20 4.31 -53.42 -0.23 -17.43 16 14 C -0.25 -6.71 10.41 -15.06 -0.16 -6.87 16 15 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 16 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 17 N -0.93 -28.77 13.97 55.49 0.78 -28.00 16 18 Si 0.88 22.50 27.73 -169.99 -4.71 17.78 16 19 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 21 H -0.27 -6.94 6.52 56.52 0.37 -6.57 16 22 C 0.10 1.40 6.89 -81.89 -0.56 0.84 16 23 C -0.09 -1.06 9.52 36.00 0.34 -0.71 16 24 N -0.44 -5.12 2.69 -107.96 -0.29 -5.41 16 25 C 0.13 1.05 5.65 -4.04 -0.02 1.03 16 26 C -0.17 -1.34 6.01 -90.62 -0.54 -1.89 16 27 C -0.17 -1.13 10.02 -26.73 -0.27 -1.39 16 28 C -0.17 -0.98 10.25 -26.73 -0.27 -1.25 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.50 7.44 -51.93 -0.39 0.11 16 32 H 0.15 2.22 7.70 -52.48 -0.40 1.82 16 33 H 0.41 7.46 7.26 -40.82 -0.30 7.16 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.48 7.39 -51.93 -0.38 1.10 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.37 4.58 9.12 45.56 0.42 4.99 16 39 H 0.37 8.94 5.66 -40.82 -0.23 8.71 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.39 6.47 -51.93 -0.34 1.05 16 43 H 0.06 0.52 6.92 -51.93 -0.36 0.16 16 44 H 0.09 0.63 6.88 -51.93 -0.36 0.27 16 45 H 0.09 0.59 7.25 -51.93 -0.38 0.21 16 46 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.10 0.53 8.03 -51.93 -0.42 0.12 16 48 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 49 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 408.53 15.07 6.16 6.16 Total: -1.00 -34.76 408.53 -9.26 -44.03 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -7.37 Total: 18.83 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.89 Total: -0.84 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -0.08 Total: -64.19 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.37 Total: -21.76 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.76 -9.26 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700825316.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.823 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds