Wall clock time and date at job start Tue Mar 31 2020 18:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34487 * 125.56935 * 2 1 4 4 C 1.46692 * 106.32674 * 180.08276 * 3 2 1 5 5 C 1.47267 * 126.94072 * 179.88472 * 4 3 2 6 6 O 1.21626 * 120.00046 * 179.68781 * 5 4 3 7 7 N 1.34775 * 119.99747 * 359.68825 * 5 4 3 8 8 C 1.46501 * 119.99874 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47349 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.46953 * 295.00895 * 9 8 7 11 11 C 1.52996 * 109.47332 * 175.00381 * 9 8 7 12 12 O 1.42906 * 109.46885 * 305.00176 * 11 9 8 13 13 N 1.46505 * 109.46807 * 55.00436 * 9 8 7 14 14 C 1.36931 * 119.99788 * 205.00000 * 13 9 8 15 15 H 1.08002 * 120.00438 * 0.02562 * 14 13 9 16 16 C 1.38817 * 119.99680 * 179.72358 * 14 13 9 17 17 N 1.31614 * 119.99888 * 0.27479 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 180.27671 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00121 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00072 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99871 * 18 16 14 22 22 C 1.36763 * 106.11806 * 359.63021 * 4 3 2 23 23 C 1.50698 * 125.80616 * 180.20404 * 22 4 3 24 24 N 1.34661 * 108.40020 * 0.22276 * 22 4 3 25 25 C 1.46494 * 124.85670 * 179.97438 * 24 22 4 26 26 C 1.52995 * 109.47487 * 89.99650 * 25 24 22 27 27 C 1.53008 * 117.49805 * 243.62421 * 26 25 24 28 28 C 1.53000 * 117.49947 * 175.00108 * 26 25 24 29 29 H 1.08992 * 109.47600 * 270.33932 * 1 2 3 30 30 H 1.09003 * 109.46815 * 30.33926 * 1 2 3 31 31 H 1.09002 * 109.47175 * 150.33216 * 1 2 3 32 32 H 1.07992 * 126.83884 * 359.96386 * 3 2 1 33 33 H 0.97000 * 120.00108 * 359.97438 * 7 5 4 34 34 H 1.09009 * 109.46721 * 60.00549 * 8 7 5 35 35 H 1.09000 * 109.47501 * 300.00847 * 8 7 5 36 36 H 1.08998 * 109.47306 * 65.00267 * 11 9 8 37 37 H 1.08990 * 109.47060 * 185.00303 * 11 9 8 38 38 H 0.96701 * 113.99874 * 179.97438 * 12 11 9 39 39 H 0.97000 * 119.99792 * 24.99795 * 13 9 8 40 40 H 0.97005 * 119.99715 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47582 * 90.01859 * 23 22 4 42 42 H 1.09000 * 109.47497 * 210.02063 * 23 22 4 43 43 H 1.09007 * 109.46850 * 330.01893 * 23 22 4 44 44 H 1.09005 * 109.46962 * 209.99974 * 25 24 22 45 45 H 1.09005 * 109.46812 * 329.99386 * 25 24 22 46 46 H 1.08996 * 115.54939 * 29.32948 * 26 25 24 47 47 H 1.08999 * 117.49959 * 359.97438 * 27 26 25 48 48 H 1.09002 * 117.49658 * 145.02264 * 27 26 25 49 49 H 1.08997 * 117.49995 * 214.97265 * 28 26 25 50 50 H 1.08996 * 117.49885 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6743 0.6105 -0.0020 5 6 4.8978 1.4301 -0.0052 6 8 5.9893 0.8934 -0.0008 7 7 4.8080 2.7748 -0.0128 8 6 6.0252 3.5902 -0.0153 9 6 5.6461 5.0725 -0.0235 10 1 5.1365 5.3120 -0.9568 11 6 6.9117 5.9233 0.0995 12 8 7.6402 5.5278 1.2636 13 7 4.7561 5.3551 1.1054 14 6 3.8912 6.4151 1.0466 15 1 3.8648 7.0425 0.1679 16 6 3.0438 6.6794 2.1139 17 7 3.0756 5.9145 3.1844 18 14 1.8585 8.1208 2.0306 19 1 0.5716 7.6700 1.4424 20 1 1.6204 8.6456 3.3992 21 1 2.4413 9.1926 1.1839 22 6 3.5998 -0.7551 0.0054 23 6 4.7721 -1.7020 0.0108 24 7 2.3008 -1.1099 0.0066 25 6 1.8098 -2.4901 0.0133 26 6 1.6383 -2.9634 1.4580 27 6 2.5143 -4.1261 1.9292 28 6 1.0207 -4.3455 1.6800 29 1 -0.3634 0.0061 1.0275 30 1 -0.3633 0.8870 -0.5191 31 1 -0.3633 -0.8930 -0.5087 32 1 1.9630 2.1234 -0.0005 33 1 3.9376 3.2028 -0.0166 34 1 6.6144 3.3606 -0.9032 35 1 6.6117 3.3704 0.8768 36 1 7.5333 5.7798 -0.7843 37 1 6.6361 6.9745 0.1830 38 1 8.4568 6.0262 1.4046 39 1 4.7795 4.7914 1.8944 40 1 2.4837 6.0995 3.9304 41 1 5.0543 -1.9250 1.0398 42 1 4.4958 -2.6253 -0.4983 43 1 5.6142 -1.2406 -0.5050 44 1 0.8497 -2.5367 -0.5008 45 1 2.5268 -3.1332 -0.4971 46 1 1.4025 -2.1845 2.1831 47 1 3.2124 -4.5540 1.2098 48 1 2.8550 -4.1121 2.9646 49 1 0.3790 -4.4760 2.5514 50 1 0.7370 -4.9177 0.7968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700825317.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:02 Heat of formation + Delta-G solvation = -33.442366 kcal Electronic energy + Delta-G solvation = -29321.136838 eV Core-core repulsion = 25349.066029 eV Total energy + Delta-G solvation = -3972.070809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.48011 -40.24080 -38.55952 -38.24327 -36.35259 -35.13092 -33.63351 -33.49099 -32.89368 -30.22030 -29.92832 -28.09744 -26.51349 -25.70198 -25.32642 -23.27846 -22.81063 -22.01322 -21.58409 -20.75111 -19.80041 -19.25687 -18.15031 -17.92014 -17.28043 -16.87453 -16.64233 -16.38181 -15.98267 -15.82569 -15.41966 -15.23211 -15.06240 -14.82834 -14.75436 -14.38240 -14.16315 -14.09792 -14.01998 -13.60738 -13.45267 -13.39631 -13.15125 -13.03895 -13.00167 -12.74811 -12.61467 -12.46304 -12.35449 -12.26200 -12.21474 -11.86026 -11.71399 -11.38755 -11.01353 -10.98756 -10.76931 -10.70157 -9.97683 -9.48766 -8.98638 -8.90774 -7.87416 -5.17084 0.78374 1.42240 1.50083 1.51400 1.59431 1.80284 2.52175 2.60276 2.64910 2.82732 3.44469 3.60202 3.62991 3.80429 3.82991 3.89916 3.92185 4.00258 4.04615 4.09503 4.18423 4.32981 4.39155 4.46868 4.50208 4.53881 4.57108 4.63685 4.71113 4.75809 4.77885 4.80551 4.89742 4.95221 4.99633 5.01657 5.03377 5.13258 5.20784 5.23562 5.24640 5.36053 5.54772 5.65219 5.84573 6.15402 6.30368 6.39540 6.76671 7.08723 7.38166 7.42120 8.10666 8.37068 9.35431 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.003069 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.838362 B = 9120.407346 C =10780.752831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.018 3.982 3 C -0.189 4.189 4 C -0.268 4.268 5 C 0.581 3.419 6 O -0.593 6.593 7 N -0.711 5.711 8 C 0.133 3.867 9 C 0.161 3.839 10 H 0.077 0.923 11 C 0.066 3.934 12 O -0.584 6.584 13 N -0.722 5.722 14 C -0.236 4.236 15 H 0.081 0.919 16 C -0.072 4.072 17 N -0.967 5.967 18 Si 0.970 3.030 19 H -0.286 1.286 20 H -0.303 1.303 21 H -0.270 1.270 22 C 0.105 3.895 23 C -0.082 4.082 24 N -0.428 5.428 25 C 0.127 3.873 26 C -0.188 4.188 27 C -0.181 4.181 28 C -0.151 4.151 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.135 0.865 33 H 0.406 0.594 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.385 0.615 39 H 0.371 0.629 40 H 0.247 0.753 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.117 0.883 45 H 0.109 0.891 46 H 0.087 0.913 47 H 0.109 0.891 48 H 0.089 0.911 49 H 0.100 0.900 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.902 -20.074 -9.728 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.213 4.213 4 C -0.278 4.278 5 C 0.372 3.628 6 O -0.477 6.477 7 N -0.360 5.360 8 C 0.008 3.992 9 C 0.052 3.948 10 H 0.095 0.905 11 C -0.015 4.015 12 O -0.390 6.390 13 N -0.362 5.362 14 C -0.368 4.368 15 H 0.099 0.901 16 C -0.265 4.265 17 N -0.617 5.617 18 Si 0.800 3.200 19 H -0.213 1.213 20 H -0.230 1.230 21 H -0.195 1.195 22 C -0.013 4.013 23 C -0.140 4.140 24 N -0.104 5.104 25 C 0.007 3.993 26 C -0.207 4.207 27 C -0.217 4.217 28 C -0.188 4.188 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.153 0.847 33 H 0.241 0.759 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.233 0.767 39 H 0.203 0.797 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.135 0.865 45 H 0.127 0.873 46 H 0.105 0.895 47 H 0.127 0.873 48 H 0.107 0.893 49 H 0.119 0.881 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.884 -20.994 -9.763 23.476 hybrid contribution -0.292 1.870 0.890 2.091 sum -4.175 -19.124 -8.873 21.492 Atomic orbital electron populations 1.20405 0.85372 1.04463 1.03344 1.20582 0.94907 0.84938 1.08589 1.21920 0.91067 0.98413 1.09882 1.20189 0.92794 0.93368 1.21439 1.17742 0.88129 0.81958 0.74963 1.90632 1.29805 1.73079 1.54227 1.45769 1.10525 1.05592 1.74134 1.21334 0.86535 0.90108 1.01174 1.20841 0.90276 0.91553 0.92142 0.90536 1.22855 0.93440 0.97897 0.87274 1.86539 1.40554 1.64581 1.47361 1.42468 1.42872 1.33902 1.16937 1.19615 1.11574 1.04972 1.00646 0.90112 1.25513 1.02478 1.01985 0.96509 1.69870 1.42516 1.42096 1.07213 0.85187 0.79261 0.79499 0.76035 1.21300 1.22993 1.19463 1.20431 0.86088 0.93419 1.01351 1.20480 0.93276 0.96869 1.03328 1.43694 1.04048 1.07098 1.55528 1.21752 1.02678 0.78648 0.96205 1.22527 1.08349 0.93054 0.96774 1.23173 0.94646 1.01084 1.02846 1.23053 0.95486 0.95847 1.04415 0.90712 0.89700 0.89337 0.84700 0.75851 0.90687 0.93448 0.91585 0.94386 0.76702 0.79721 0.94368 0.90688 0.88926 0.90382 0.86498 0.87319 0.89469 0.87262 0.89276 0.88123 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.06 71.24 0.72 -0.67 16 2 C 0.02 0.46 6.85 40.98 0.28 0.74 16 3 C -0.19 -6.28 10.45 23.62 0.25 -6.03 16 4 C -0.27 -9.72 6.29 -19.04 -0.12 -9.83 16 5 C 0.58 24.00 7.81 86.62 0.68 24.67 16 6 O -0.59 -26.48 14.81 -4.11 -0.06 -26.54 16 7 N -0.71 -28.83 5.38 -466.50 -2.51 -31.34 16 8 C 0.13 5.26 5.12 86.38 0.44 5.70 16 9 C 0.16 6.44 2.84 44.99 0.13 6.57 16 10 H 0.08 2.87 8.08 -2.39 -0.02 2.85 16 11 C 0.07 2.31 6.86 71.98 0.49 2.80 16 12 O -0.58 -21.52 12.64 -148.98 -1.88 -23.40 16 13 N -0.72 -36.38 4.51 -322.93 -1.46 -37.84 16 14 C -0.24 -12.75 9.93 84.04 0.83 -11.92 16 15 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 16 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 17 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 18 Si 0.97 45.77 29.55 68.60 2.03 47.79 16 19 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 20 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 C 0.11 3.09 6.89 41.78 0.29 3.37 16 23 C -0.08 -2.02 9.52 71.24 0.68 -1.34 16 24 N -0.43 -9.96 2.69 -495.49 -1.33 -11.29 16 25 C 0.13 1.76 5.86 86.38 0.51 2.27 16 26 C -0.19 -2.70 6.01 -10.79 -0.06 -2.76 16 27 C -0.18 -2.20 10.18 30.60 0.31 -1.89 16 28 C -0.15 -1.40 10.25 30.60 0.31 -1.09 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 1.06 6.94 -2.39 -0.02 1.04 16 32 H 0.14 4.64 7.69 -2.91 -0.02 4.62 16 33 H 0.41 16.82 7.26 -92.71 -0.67 16.14 16 34 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 35 H 0.05 2.13 7.39 -2.39 -0.02 2.11 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.39 10.00 9.12 -74.06 -0.68 9.33 16 39 H 0.37 21.31 7.80 -92.71 -0.72 20.59 16 40 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.09 1.52 6.92 -2.39 -0.02 1.50 16 43 H 0.08 2.30 6.47 -2.38 -0.02 2.28 16 44 H 0.12 1.10 6.90 -2.38 -0.02 1.08 16 45 H 0.11 1.13 6.61 -2.38 -0.02 1.12 16 46 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.11 1.05 8.03 -2.39 -0.02 1.04 16 48 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -76.29 411.15 0.17 -76.13 By element: Atomic # 1 Polarization: 60.19 SS G_CDS: -1.10 Total: 59.09 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 6.20 Total: 6.94 kcal Atomic # 7 Polarization: -135.00 SS G_CDS: -5.02 Total: -140.02 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -1.94 Total: -49.94 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -76.29 0.17 -76.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700825317.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.683 kcal (2) G-P(sol) polarization free energy of solvation -76.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds