Wall clock time and date at job start Tue Mar 31 2020 18:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31887 * 119.61470 * 2 1 4 4 C 1.31859 * 121.72641 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.76159 * 359.97438 * 4 3 2 6 6 C 1.38628 * 119.16307 * 0.02562 * 5 4 3 7 7 C 1.38182 * 119.61909 * 180.23421 * 2 1 3 8 8 C 1.50694 * 120.41867 * 0.02678 * 7 2 1 9 9 C 1.50703 * 109.47020 * 85.27355 * 8 7 2 10 10 O 1.21277 * 120.00064 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99525 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00373 * 0.02562 * 11 9 8 13 13 C 1.46507 * 119.99618 * 179.97438 * 11 9 8 14 14 C 1.53002 * 109.46604 * 90.00431 * 13 11 9 15 15 O 1.42894 * 109.47490 * 65.00109 * 14 13 11 16 16 C 1.42894 * 114.00374 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47271 * 179.97438 * 16 15 14 18 18 N 1.46502 * 109.47196 * 65.00387 * 17 16 15 19 19 C 1.46500 * 119.99368 * 269.99920 * 18 17 16 20 20 C 1.36931 * 120.00174 * 89.99927 * 18 17 16 21 21 H 1.08004 * 120.00194 * 22.67661 * 20 18 17 22 22 C 1.38812 * 119.99989 * 202.67806 * 20 18 17 23 23 N 1.31625 * 120.00054 * 11.49972 * 22 20 18 24 24 Si 1.86801 * 120.00138 * 191.50096 * 22 20 18 25 25 H 1.48494 * 109.46911 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47144 * 120.00127 * 24 22 20 27 27 H 1.48505 * 109.47040 * 239.99915 * 24 22 20 28 28 H 1.09001 * 109.47153 * 90.00071 * 1 2 3 29 29 H 1.09001 * 109.46842 * 210.00117 * 1 2 3 30 30 H 1.09002 * 109.47376 * 329.99796 * 1 2 3 31 31 H 1.08000 * 119.61987 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.42126 * 179.97438 * 5 4 3 33 33 H 1.07995 * 120.79308 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.47249 * 205.27264 * 8 7 2 35 35 H 1.09000 * 109.47374 * 325.26797 * 8 7 2 36 36 H 1.09007 * 109.46938 * 89.99888 * 12 11 9 37 37 H 1.08998 * 109.47225 * 209.99889 * 12 11 9 38 38 H 1.09002 * 109.47098 * 329.99933 * 12 11 9 39 39 H 1.09003 * 109.47068 * 210.00399 * 13 11 9 40 40 H 1.08997 * 109.47087 * 330.00442 * 13 11 9 41 41 H 1.09008 * 109.46699 * 184.99864 * 14 13 11 42 42 H 1.08999 * 109.47394 * 304.99603 * 14 13 11 43 43 H 1.08999 * 109.47316 * 299.99839 * 16 15 14 44 44 H 1.09004 * 109.46788 * 59.99960 * 16 15 14 45 45 H 1.09004 * 109.46984 * 185.00126 * 17 16 15 46 46 H 1.08998 * 109.47266 * 304.99549 * 17 16 15 47 47 H 1.08998 * 109.47171 * 93.92901 * 19 18 17 48 48 H 1.09004 * 109.46991 * 213.92759 * 19 18 17 49 49 H 1.09000 * 109.47580 * 333.92270 * 19 18 17 50 50 H 0.96994 * 120.00001 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1466 0.0000 4 6 3.4764 1.1952 0.0005 5 6 4.2267 0.0342 0.0016 6 6 3.5767 -1.1902 0.0016 7 6 2.1899 -1.2012 -0.0049 8 6 1.4373 -2.5068 -0.0109 9 6 1.0856 -2.8774 -1.4286 10 8 1.4133 -2.1525 -2.3440 11 7 0.4068 -4.0144 -1.6792 12 6 0.0103 -4.8898 -0.5734 13 6 0.0643 -4.3745 -3.0575 14 6 1.1910 -5.2167 -3.6594 15 8 1.2857 -6.4574 -2.9570 16 6 2.3128 -7.3237 -3.4432 17 6 2.3228 -8.6143 -2.6216 18 7 1.0689 -9.3406 -2.8377 19 6 -0.0836 -9.0863 -1.9698 20 6 0.9742 -10.2568 -3.8509 21 1 1.8669 -10.7171 -4.2480 22 6 -0.2692 -10.5941 -4.3677 23 7 -1.3290 -9.8805 -4.0513 24 14 -0.4385 -12.0608 -5.5121 25 1 0.8917 -12.6909 -5.7091 26 1 -1.3716 -13.0496 -4.9148 27 1 -0.9700 -11.6074 -6.8225 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 3.9752 2.1531 0.0009 32 1 5.3057 0.0804 0.0016 33 1 4.1368 -2.1135 0.0020 34 1 2.0608 -3.2876 0.4248 35 1 0.5239 -2.4023 0.5747 36 1 -0.9756 -4.5960 -0.2129 37 1 -0.0228 -5.9223 -0.9213 38 1 0.7344 -4.8024 0.2367 39 1 -0.8619 -4.9491 -3.0635 40 1 -0.0668 -3.4677 -3.6479 41 1 0.9782 -5.4097 -4.7109 42 1 2.1341 -4.6771 -3.5727 43 1 2.1229 -7.5606 -4.4901 44 1 3.2793 -6.8281 -3.3523 45 1 3.1615 -9.2369 -2.9332 46 1 2.4242 -8.3710 -1.5640 47 1 -0.7244 -8.3330 -2.4280 48 1 -0.6474 -10.0095 -1.8347 49 1 0.2633 -8.7276 -1.0008 50 1 -2.1978 -10.1160 -4.4127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707233105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:38 Heat of formation + Delta-G solvation = -18.026072 kcal Electronic energy + Delta-G solvation = -29406.753247 eV Core-core repulsion = 25435.350938 eV Total energy + Delta-G solvation = -3971.402309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.82022 -39.58402 -37.50868 -35.67543 -34.94280 -34.05303 -33.17405 -31.57483 -30.37800 -28.77779 -27.98938 -27.36338 -26.21278 -25.73470 -23.47601 -22.97017 -22.52544 -21.76926 -20.32891 -19.15450 -17.28068 -17.11143 -16.72958 -16.64404 -16.33703 -15.75126 -15.59228 -15.23878 -14.89135 -14.64663 -14.40481 -14.01017 -13.57987 -13.46497 -13.32316 -13.28325 -13.01053 -12.96859 -12.76831 -12.51325 -12.40387 -12.31399 -12.12484 -12.00930 -11.56225 -11.39989 -11.34787 -10.95770 -10.85213 -10.75044 -10.50719 -10.09583 -10.08469 -9.90831 -9.82626 -9.74080 -9.63549 -8.98641 -8.91768 -8.61021 -8.50425 -6.68821 -5.68246 -3.13603 0.89558 1.10221 2.57838 3.00389 3.37805 3.45214 3.46804 3.61060 4.10099 4.27176 4.36380 4.52665 4.54094 4.59842 4.64783 4.76600 5.05651 5.10373 5.22664 5.31805 5.36721 5.38156 5.40004 5.42961 5.44291 5.50221 5.55933 5.60826 5.71025 5.79615 5.84429 5.95278 5.96150 5.98479 6.04884 6.12480 6.19285 6.26104 6.50924 6.54152 6.56773 6.77145 6.89780 7.38335 7.47808 7.80684 7.81328 7.86614 7.92717 8.14308 8.44201 9.28968 9.92436 10.42609 11.36214 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026421 B = 0.002229 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.518903 B =12556.663616 C =12869.870771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.144 3.856 3 N -0.487 5.487 4 C 0.099 3.901 5 C -0.179 4.179 6 C -0.061 4.061 7 C -0.114 4.114 8 C -0.100 4.100 9 C 0.514 3.486 10 O -0.540 6.540 11 N -0.603 5.603 12 C 0.076 3.924 13 C 0.121 3.879 14 C 0.049 3.951 15 O -0.366 6.366 16 C 0.044 3.956 17 C 0.154 3.846 18 N -0.596 5.596 19 C 0.175 3.825 20 C -0.254 4.254 21 H 0.066 0.934 22 C 0.001 3.999 23 N -0.904 5.904 24 Si 0.901 3.099 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.291 1.291 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.154 0.846 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.047 0.953 44 H 0.021 0.979 45 H 0.057 0.943 46 H 0.042 0.958 47 H 0.031 0.969 48 H 0.037 0.963 49 H -0.008 1.008 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.191 17.981 11.270 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.006 3.994 3 N -0.196 5.196 4 C -0.058 4.058 5 C -0.199 4.199 6 C -0.087 4.087 7 C -0.116 4.116 8 C -0.140 4.140 9 C 0.302 3.698 10 O -0.417 6.417 11 N -0.336 5.336 12 C -0.067 4.067 13 C -0.001 4.001 14 C -0.029 4.029 15 O -0.285 6.285 16 C -0.035 4.035 17 C 0.026 3.974 18 N -0.319 5.319 19 C 0.031 3.969 20 C -0.384 4.384 21 H 0.084 0.916 22 C -0.197 4.197 23 N -0.549 5.549 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.219 1.219 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.171 0.829 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.056 0.944 49 H 0.011 0.989 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.565 19.033 10.905 22.630 hybrid contribution 0.630 -1.574 -1.097 2.020 sum 6.195 17.458 9.808 20.961 Atomic orbital electron populations 1.20785 0.89120 1.03179 1.03456 1.21041 0.96839 0.87714 0.93792 1.67514 1.10107 1.29068 1.12895 1.22701 0.89481 0.98405 0.95186 1.22067 1.01390 0.93366 1.03088 1.21454 0.93598 0.98641 0.94963 1.20104 0.94231 0.94969 1.02340 1.20691 1.02081 0.95506 0.95754 1.20410 0.77899 0.80717 0.90801 1.90707 1.53314 1.51155 1.46566 1.47778 1.55808 1.21835 1.08129 1.21932 0.99340 0.96542 0.88915 1.21552 0.98088 0.98749 0.81757 1.22749 0.97837 0.86379 0.95971 1.87913 1.56184 1.26864 1.57574 1.23449 0.87789 0.92379 0.99891 1.20880 0.90594 0.89451 0.96497 1.43886 1.08978 1.44393 1.34644 1.20685 0.88543 0.99385 0.88303 1.19243 0.92832 1.14673 1.11627 0.91575 1.25019 0.96542 0.99186 0.98942 1.70092 0.98838 1.38726 1.47241 0.86232 0.77573 0.82568 0.80445 1.20432 1.21681 1.21854 0.90049 0.90737 0.90460 0.82874 0.84839 0.84942 0.87724 0.87454 0.92764 0.88748 0.91549 0.89147 0.89053 0.92969 0.94238 0.93509 0.96070 0.92513 0.93932 0.95018 0.94439 0.98921 0.93987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.76 36.00 0.35 -0.67 16 2 C 0.14 1.68 6.78 -82.59 -0.56 1.12 16 3 N -0.49 -5.98 10.27 -9.47 -0.10 -6.08 16 4 C 0.10 1.00 11.18 -17.54 -0.20 0.80 16 5 C -0.18 -1.64 10.11 -39.44 -0.40 -2.04 16 6 C -0.06 -0.61 9.84 -39.27 -0.39 -1.00 16 7 C -0.11 -1.25 4.39 -104.48 -0.46 -1.71 16 8 C -0.10 -0.94 3.91 -29.04 -0.11 -1.05 16 9 C 0.51 6.61 7.67 -10.98 -0.08 6.53 16 10 O -0.54 -8.93 15.61 5.56 0.09 -8.84 16 11 N -0.60 -7.60 2.84 -181.56 -0.52 -8.11 16 12 C 0.08 0.79 10.06 59.85 0.60 1.39 16 13 C 0.12 1.71 5.81 -4.04 -0.02 1.68 16 14 C 0.05 0.79 6.28 37.16 0.23 1.02 16 15 O -0.37 -6.85 8.73 -35.23 -0.31 -7.16 16 16 C 0.04 0.85 6.28 37.16 0.23 1.08 16 17 C 0.15 3.12 6.11 -4.04 -0.02 3.10 16 18 N -0.60 -14.85 2.89 -181.12 -0.52 -15.37 16 19 C 0.18 4.28 8.61 59.85 0.52 4.79 16 20 C -0.25 -6.92 9.67 -15.06 -0.15 -7.06 16 21 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 22 C 0.00 0.04 5.12 -17.43 -0.09 -0.05 16 23 N -0.90 -26.10 10.62 55.49 0.59 -25.51 16 24 Si 0.90 21.76 29.57 -169.99 -5.03 16.74 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.55 6.03 -51.93 -0.31 0.24 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.10 0.80 7.32 -51.93 -0.38 0.42 16 35 H 0.11 0.77 6.13 -51.93 -0.32 0.45 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 1.25 7.12 -51.93 -0.37 0.88 16 38 H 0.07 0.55 6.44 -51.93 -0.33 0.21 16 39 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 40 H 0.09 1.26 7.42 -51.93 -0.39 0.88 16 41 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 1.09 8.03 -51.93 -0.42 0.68 16 46 H 0.04 0.80 7.87 -51.93 -0.41 0.39 16 47 H 0.03 0.83 7.43 -51.93 -0.39 0.45 16 48 H 0.04 0.99 7.20 -51.93 -0.37 0.61 16 49 H -0.01 -0.17 7.85 -51.93 -0.41 -0.57 16 50 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 407.66 15.07 6.14 6.14 Total: -1.00 -34.16 407.66 -8.48 -42.64 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -8.29 Total: -2.38 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -0.55 Total: 7.94 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.55 Total: -55.08 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.22 Total: -16.00 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.16 -8.48 -42.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707233105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.614 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds