Wall clock time and date at job start Tue Mar 31 2020 18:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31887 * 119.61470 * 2 1 4 4 C 1.31859 * 121.72641 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.76159 * 359.97438 * 4 3 2 6 6 C 1.38628 * 119.16307 * 0.02562 * 5 4 3 7 7 C 1.38182 * 119.61909 * 180.23421 * 2 1 3 8 8 C 1.50694 * 120.41867 * 0.02678 * 7 2 1 9 9 C 1.50703 * 109.47020 * 85.27355 * 8 7 2 10 10 O 1.21277 * 120.00064 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99525 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00373 * 0.02562 * 11 9 8 13 13 C 1.46507 * 119.99618 * 179.97438 * 11 9 8 14 14 C 1.53002 * 109.46604 * 90.00431 * 13 11 9 15 15 O 1.42894 * 109.47490 * 65.00109 * 14 13 11 16 16 C 1.42894 * 114.00374 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47271 * 179.97438 * 16 15 14 18 18 N 1.46502 * 109.47196 * 65.00387 * 17 16 15 19 19 C 1.46500 * 119.99368 * 269.99920 * 18 17 16 20 20 C 1.36931 * 120.00174 * 89.99927 * 18 17 16 21 21 H 1.08004 * 120.00194 * 22.67661 * 20 18 17 22 22 C 1.38812 * 119.99989 * 202.67806 * 20 18 17 23 23 N 1.31625 * 120.00054 * 11.49972 * 22 20 18 24 24 Si 1.86801 * 120.00138 * 191.50096 * 22 20 18 25 25 H 1.48494 * 109.46911 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47144 * 120.00127 * 24 22 20 27 27 H 1.48505 * 109.47040 * 239.99915 * 24 22 20 28 28 H 1.09001 * 109.47153 * 90.00071 * 1 2 3 29 29 H 1.09001 * 109.46842 * 210.00117 * 1 2 3 30 30 H 1.09002 * 109.47376 * 329.99796 * 1 2 3 31 31 H 1.08000 * 119.61987 * 180.02562 * 4 3 2 32 32 H 1.07999 * 120.42126 * 179.97438 * 5 4 3 33 33 H 1.07995 * 120.79308 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.47249 * 205.27264 * 8 7 2 35 35 H 1.09000 * 109.47374 * 325.26797 * 8 7 2 36 36 H 1.09007 * 109.46938 * 89.99888 * 12 11 9 37 37 H 1.08998 * 109.47225 * 209.99889 * 12 11 9 38 38 H 1.09002 * 109.47098 * 329.99933 * 12 11 9 39 39 H 1.09003 * 109.47068 * 210.00399 * 13 11 9 40 40 H 1.08997 * 109.47087 * 330.00442 * 13 11 9 41 41 H 1.09008 * 109.46699 * 184.99864 * 14 13 11 42 42 H 1.08999 * 109.47394 * 304.99603 * 14 13 11 43 43 H 1.08999 * 109.47316 * 299.99839 * 16 15 14 44 44 H 1.09004 * 109.46788 * 59.99960 * 16 15 14 45 45 H 1.09004 * 109.46984 * 185.00126 * 17 16 15 46 46 H 1.08998 * 109.47266 * 304.99549 * 17 16 15 47 47 H 1.08998 * 109.47171 * 93.92901 * 19 18 17 48 48 H 1.09004 * 109.46991 * 213.92759 * 19 18 17 49 49 H 1.09000 * 109.47580 * 333.92270 * 19 18 17 50 50 H 0.96994 * 120.00001 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1466 0.0000 4 6 3.4764 1.1952 0.0005 5 6 4.2267 0.0342 0.0016 6 6 3.5767 -1.1902 0.0016 7 6 2.1899 -1.2012 -0.0049 8 6 1.4373 -2.5068 -0.0109 9 6 1.0856 -2.8774 -1.4286 10 8 1.4133 -2.1525 -2.3440 11 7 0.4068 -4.0144 -1.6792 12 6 0.0103 -4.8898 -0.5734 13 6 0.0643 -4.3745 -3.0575 14 6 1.1910 -5.2167 -3.6594 15 8 1.2857 -6.4574 -2.9570 16 6 2.3128 -7.3237 -3.4432 17 6 2.3228 -8.6143 -2.6216 18 7 1.0689 -9.3406 -2.8377 19 6 -0.0836 -9.0863 -1.9698 20 6 0.9742 -10.2568 -3.8509 21 1 1.8669 -10.7171 -4.2480 22 6 -0.2692 -10.5941 -4.3677 23 7 -1.3290 -9.8805 -4.0513 24 14 -0.4385 -12.0608 -5.5121 25 1 0.8917 -12.6909 -5.7091 26 1 -1.3716 -13.0496 -4.9148 27 1 -0.9700 -11.6074 -6.8225 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 3.9752 2.1531 0.0009 32 1 5.3057 0.0804 0.0016 33 1 4.1368 -2.1135 0.0020 34 1 2.0608 -3.2876 0.4248 35 1 0.5239 -2.4023 0.5747 36 1 -0.9756 -4.5960 -0.2129 37 1 -0.0228 -5.9223 -0.9213 38 1 0.7344 -4.8024 0.2367 39 1 -0.8619 -4.9491 -3.0635 40 1 -0.0668 -3.4677 -3.6479 41 1 0.9782 -5.4097 -4.7109 42 1 2.1341 -4.6771 -3.5727 43 1 2.1229 -7.5606 -4.4901 44 1 3.2793 -6.8281 -3.3523 45 1 3.1615 -9.2369 -2.9332 46 1 2.4242 -8.3710 -1.5640 47 1 -0.7244 -8.3330 -2.4280 48 1 -0.6474 -10.0095 -1.8347 49 1 0.2633 -8.7276 -1.0008 50 1 -2.1978 -10.1160 -4.4127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707233105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:37 Heat of formation + Delta-G solvation = -38.820447 kcal Electronic energy + Delta-G solvation = -29407.654958 eV Core-core repulsion = 25435.350938 eV Total energy + Delta-G solvation = -3972.304020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.63600 -40.53329 -38.96129 -37.22386 -36.32709 -34.85149 -33.89388 -33.44469 -31.64418 -29.93360 -29.27500 -28.13632 -27.77443 -27.16892 -24.83716 -24.39857 -23.39384 -22.62238 -22.11225 -20.12403 -18.77228 -18.20325 -17.90035 -17.49912 -17.31192 -17.16703 -16.89287 -16.52800 -16.31975 -15.63346 -15.42751 -15.36419 -15.21616 -14.91567 -14.27326 -14.23744 -14.10022 -13.97884 -13.77913 -13.56495 -13.48981 -13.24706 -13.21790 -13.02562 -12.95962 -12.86939 -12.71592 -12.57243 -12.41490 -12.26362 -12.17225 -11.96493 -11.76990 -11.68353 -11.04308 -10.61636 -10.59904 -10.40124 -10.38148 -9.71924 -9.64198 -8.70292 -7.76832 -5.23731 0.15253 0.35929 1.46403 1.48164 1.57576 1.61667 2.05107 2.53445 2.84526 2.89985 3.36192 3.41357 3.61961 3.74011 3.78768 3.88678 3.95418 4.09974 4.12706 4.16898 4.35232 4.40532 4.42656 4.51194 4.54520 4.55354 4.62413 4.65605 4.68432 4.69569 4.72796 4.76017 4.80916 4.86715 4.97090 5.01372 5.14334 5.15931 5.18958 5.25153 5.32304 5.44328 5.50214 5.69375 5.81941 5.89952 6.36462 6.39666 6.49484 7.06297 7.16770 7.22238 7.95360 8.39309 9.26039 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026421 B = 0.002229 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.518903 B =12556.663616 C =12869.870771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.120 3.880 3 N -0.517 5.517 4 C 0.085 3.915 5 C -0.179 4.179 6 C -0.073 4.073 7 C -0.127 4.127 8 C -0.092 4.092 9 C 0.513 3.487 10 O -0.582 6.582 11 N -0.603 5.603 12 C 0.075 3.925 13 C 0.126 3.874 14 C 0.053 3.947 15 O -0.377 6.377 16 C 0.052 3.948 17 C 0.151 3.849 18 N -0.613 5.613 19 C 0.194 3.806 20 C -0.259 4.259 21 H 0.070 0.930 22 C -0.054 4.054 23 N -0.933 5.933 24 Si 0.963 3.037 25 H -0.267 1.267 26 H -0.292 1.292 27 H -0.296 1.296 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.177 0.823 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.042 0.958 42 H 0.040 0.960 43 H 0.017 0.983 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.005 0.995 48 H 0.007 0.993 49 H 0.025 0.975 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 17.927 12.742 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.017 4.017 3 N -0.227 5.227 4 C -0.071 4.071 5 C -0.198 4.198 6 C -0.099 4.099 7 C -0.130 4.130 8 C -0.131 4.131 9 C 0.303 3.697 10 O -0.463 6.463 11 N -0.335 5.335 12 C -0.067 4.067 13 C 0.003 3.997 14 C -0.025 4.025 15 O -0.296 6.296 16 C -0.027 4.027 17 C 0.024 3.976 18 N -0.336 5.336 19 C 0.049 3.951 20 C -0.390 4.390 21 H 0.088 0.912 22 C -0.249 4.249 23 N -0.580 5.580 24 Si 0.792 3.208 25 H -0.191 1.191 26 H -0.219 1.219 27 H -0.224 1.224 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.194 0.806 32 H 0.179 0.821 33 H 0.168 0.832 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.024 0.976 48 H 0.026 0.974 49 H 0.043 0.957 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.101 18.972 12.404 23.753 hybrid contribution 0.258 -1.490 -1.527 2.149 sum 7.358 17.483 10.877 21.865 Atomic orbital electron populations 1.20801 0.88271 1.04421 1.02791 1.21391 0.97777 0.88092 0.94411 1.67517 1.11361 1.29804 1.13970 1.23199 0.89132 1.00006 0.94796 1.22412 1.02843 0.92778 1.01792 1.21822 0.93662 0.99791 0.94643 1.20306 0.94864 0.95256 1.02524 1.20729 1.03514 0.95446 0.93462 1.20997 0.76854 0.79955 0.91880 1.90691 1.54971 1.52406 1.48199 1.47858 1.55612 1.22198 1.07819 1.22048 1.01474 0.94501 0.88689 1.21375 0.97041 0.98189 0.83108 1.22782 0.98599 0.85630 0.95492 1.87900 1.56328 1.27613 1.57779 1.23228 0.89318 0.92409 0.97757 1.21068 0.88822 0.89672 0.98027 1.44117 1.10322 1.44922 1.34216 1.20376 0.88139 0.97090 0.89482 1.19565 0.92895 1.14931 1.11578 0.91250 1.25742 0.96502 1.01764 1.00895 1.70254 0.98950 1.40191 1.48610 0.85262 0.77750 0.79588 0.78197 1.19124 1.21903 1.22359 0.91545 0.88659 0.90119 0.80601 0.82055 0.83210 0.85342 0.84977 0.90703 0.91510 0.88699 0.89631 0.89089 0.94003 0.94188 0.96450 0.92990 0.91414 0.91720 0.97626 0.97370 0.95655 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 9.76 71.24 0.70 -1.23 16 2 C 0.12 2.72 6.78 42.54 0.29 3.01 16 3 N -0.52 -12.48 10.27 -183.88 -1.89 -14.37 16 4 C 0.09 1.62 11.18 84.69 0.95 2.56 16 5 C -0.18 -2.92 10.11 22.36 0.23 -2.70 16 6 C -0.07 -1.33 9.84 22.47 0.22 -1.11 16 7 C -0.13 -2.56 4.39 -19.77 -0.09 -2.65 16 8 C -0.09 -1.47 3.91 29.10 0.11 -1.36 16 9 C 0.51 12.40 7.67 87.66 0.67 13.07 16 10 O -0.58 -19.01 15.61 -3.02 -0.05 -19.05 16 11 N -0.60 -14.31 2.84 -846.73 -2.40 -16.71 16 12 C 0.07 1.39 10.06 127.77 1.29 2.67 16 13 C 0.13 3.54 5.81 86.38 0.50 4.05 16 14 C 0.05 1.71 6.28 71.98 0.45 2.16 16 15 O -0.38 -13.80 8.73 -148.98 -1.30 -15.10 16 16 C 0.05 1.91 6.28 71.98 0.45 2.37 16 17 C 0.15 5.81 6.11 86.38 0.53 6.34 16 18 N -0.61 -30.07 2.89 -726.93 -2.10 -32.17 16 19 C 0.19 9.42 8.61 127.77 1.10 10.52 16 20 C -0.26 -14.03 9.67 84.03 0.81 -13.22 16 21 H 0.07 3.64 7.85 -2.91 -0.02 3.61 16 22 C -0.05 -3.01 5.12 84.86 0.43 -2.57 16 23 N -0.93 -54.86 10.62 21.65 0.23 -54.63 16 24 Si 0.96 44.98 29.57 68.60 2.03 47.00 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.23 6.03 -2.39 -0.01 1.21 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.13 1.45 7.32 -2.38 -0.02 1.43 16 35 H 0.13 1.43 6.13 -2.39 -0.01 1.41 16 36 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.07 1.67 7.12 -2.39 -0.02 1.65 16 38 H 0.09 1.20 6.44 -2.39 -0.02 1.19 16 39 H 0.09 2.47 8.07 -2.39 -0.02 2.45 16 40 H 0.09 2.56 7.42 -2.39 -0.02 2.54 16 41 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.07 2.45 8.03 -2.38 -0.02 2.43 16 46 H 0.06 2.21 7.87 -2.39 -0.02 2.20 16 47 H 0.01 0.29 7.43 -2.39 -0.02 0.27 16 48 H 0.01 0.41 7.20 -2.38 -0.02 0.39 16 49 H 0.03 1.03 7.85 -2.39 -0.02 1.01 16 50 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -74.84 407.66 4.08 -70.76 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.91 Total: 12.35 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 8.64 Total: 21.92 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -6.16 Total: -117.87 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.35 Total: -34.15 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -74.84 4.08 -70.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707233105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.937 kcal (2) G-P(sol) polarization free energy of solvation -74.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds