Wall clock time and date at job start Tue Mar 31 2020 18:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34781 * 120.00489 * 2 1 4 4 O 1.21274 * 120.00427 * 185.12256 * 3 2 1 5 5 C 1.50698 * 119.99631 * 5.11695 * 3 2 1 6 6 C 1.53000 * 110.34997 * 299.49313 * 5 3 2 7 7 C 1.51104 * 110.38749 * 61.77920 * 5 3 2 8 8 C 1.30796 * 110.94728 * 135.35769 * 7 5 3 9 9 C 1.51099 * 111.15379 * 359.95319 * 8 7 5 10 10 C 1.54633 * 110.38689 * 177.20089 * 5 3 2 11 11 C 1.46499 * 120.00076 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.27971 * 177.91272 * 11 2 1 13 13 C 1.54599 * 110.30849 * 55.71331 * 11 2 1 14 14 C 1.54931 * 102.92443 * 219.12806 * 13 11 2 15 15 N 1.48534 * 103.22673 * 37.41699 * 14 13 11 16 16 C 1.46900 * 110.99778 * 200.27764 * 15 14 13 17 17 C 1.50694 * 109.47547 * 287.39477 * 16 15 14 18 18 O 1.21297 * 119.99822 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00450 * 180.02562 * 17 16 15 20 20 C 1.37091 * 120.00017 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00462 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99911 * 179.97438 * 20 19 17 23 23 N 1.31419 * 120.00130 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00052 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47290 * 59.99980 * 24 22 20 26 26 H 1.48508 * 109.47241 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47320 * 299.99829 * 24 22 20 28 28 C 1.47903 * 105.81643 * 320.78971 * 15 14 13 29 29 H 1.08999 * 109.47511 * 93.39990 * 1 2 3 30 30 H 1.09004 * 109.47450 * 213.40739 * 1 2 3 31 31 H 1.09004 * 109.47402 * 333.40491 * 1 2 3 32 32 H 1.09002 * 109.46924 * 59.29416 * 6 5 3 33 33 H 1.09000 * 109.46774 * 299.29982 * 6 5 3 34 34 H 1.08995 * 109.47766 * 179.30071 * 6 5 3 35 35 H 1.08004 * 124.44838 * 315.36003 * 7 5 3 36 36 H 1.08008 * 124.39869 * 179.97438 * 8 7 5 37 37 H 1.09000 * 110.38952 * 224.78520 * 9 8 7 38 38 H 1.08998 * 110.48264 * 102.45236 * 9 8 7 39 39 H 1.09003 * 111.03865 * 334.47900 * 10 5 3 40 40 H 1.09003 * 111.03673 * 98.40951 * 10 5 3 41 41 H 1.09000 * 110.72301 * 337.48952 * 13 11 2 42 42 H 1.09005 * 110.72405 * 100.76777 * 13 11 2 43 43 H 1.09002 * 110.67233 * 278.97881 * 14 13 11 44 44 H 1.09008 * 110.80893 * 155.91629 * 14 13 11 45 45 H 1.09007 * 109.47340 * 47.39567 * 16 15 14 46 46 H 1.09002 * 109.47078 * 167.39103 * 16 15 14 47 47 H 0.96995 * 119.99691 * 359.97438 * 19 17 16 48 48 H 0.96993 * 119.99793 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.91711 * 265.97672 * 28 15 14 50 50 H 1.09004 * 110.07479 * 144.78013 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3480 1.1693 -0.0938 5 6 1.3899 2.4697 0.1164 6 6 0.4187 2.6314 -1.0546 7 6 0.6458 2.5334 1.4300 8 6 0.7989 3.7017 1.9978 9 6 1.6697 4.6065 1.1576 10 6 2.3790 3.6574 0.1640 11 6 2.1974 -1.2687 0.0006 12 1 3.2712 -1.0850 -0.0368 13 6 1.7584 -2.1423 -1.1970 14 6 1.7258 -3.5683 -0.5921 15 7 1.2062 -3.3432 0.7810 16 6 1.5443 -4.4684 1.6628 17 6 0.6962 -5.6610 1.3033 18 8 -0.1103 -5.5817 0.4008 19 7 0.8338 -6.8158 1.9844 20 6 0.0619 -7.9006 1.6575 21 1 -0.6562 -7.8300 0.8540 22 6 0.2042 -9.0913 2.3594 23 7 1.0783 -9.1775 3.3369 24 14 -0.8471 -10.5696 1.9136 25 1 -0.5900 -10.9523 0.5020 26 1 -0.5057 -11.7069 2.8054 27 1 -2.2820 -10.2248 2.0794 28 6 1.8393 -2.0921 1.2516 29 1 -0.3634 -0.0609 -1.0258 30 1 -0.3634 -0.8579 0.5658 31 1 -0.3634 0.9189 0.4601 32 1 -0.2885 1.8019 -1.0573 33 1 0.9764 2.6364 -1.9912 34 1 -0.1237 3.5710 -0.9498 35 1 0.0656 1.7218 1.8434 36 1 0.3601 3.9824 2.9440 37 1 2.4018 5.1171 1.7833 38 1 1.0591 5.3318 0.6199 39 1 3.3496 3.3432 0.5478 40 1 2.4798 4.1221 -0.8169 41 1 0.7684 -1.8487 -1.5462 42 1 2.4871 -2.0828 -2.0055 43 1 2.7281 -3.9953 -0.5590 44 1 1.0528 -4.2133 -1.1572 45 1 2.5976 -4.7216 1.5412 46 1 1.3556 -4.1875 2.6990 47 1 1.4790 -6.8794 2.7058 48 1 1.1779 -10.0088 3.8265 49 1 2.7430 -2.3227 1.8157 50 1 1.1436 -1.5332 1.8775 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714012482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:18 Heat of formation + Delta-G solvation = -26.261593 kcal Electronic energy + Delta-G solvation = -29537.562539 eV Core-core repulsion = 25565.803112 eV Total energy + Delta-G solvation = -3971.759428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.15900 -39.30722 -38.10450 -37.32899 -35.36776 -33.86464 -32.12052 -31.25819 -30.72650 -29.36743 -28.44657 -27.29543 -26.57347 -25.53878 -24.20659 -22.39539 -21.21861 -20.27034 -19.69247 -19.18718 -19.04404 -17.86314 -17.00299 -16.86554 -16.00300 -15.72913 -15.53599 -15.29222 -14.93784 -14.52327 -14.45197 -13.92807 -13.79503 -13.72556 -13.44703 -13.28415 -12.85257 -12.76904 -12.69189 -12.46053 -12.26515 -12.02422 -11.86208 -11.79740 -11.73406 -11.59685 -11.49095 -11.45264 -11.41590 -11.10843 -11.01705 -10.87732 -10.63801 -10.43559 -10.20411 -9.88855 -9.47387 -9.26409 -8.77900 -8.47141 -7.99877 -7.92893 -6.40379 -3.81200 1.78317 2.50162 2.82455 3.20506 3.26104 3.30351 3.92218 4.02783 4.07445 4.16780 4.26903 4.45289 4.61800 4.65141 4.76345 4.84176 4.95309 4.97639 5.08748 5.16998 5.21387 5.27221 5.28253 5.29806 5.34500 5.37188 5.39939 5.50188 5.53820 5.62275 5.68706 5.77844 5.79663 5.80131 5.83831 5.88254 5.93989 5.96114 6.09600 6.15363 6.28958 6.38053 6.42979 6.48186 7.10575 7.19310 7.28045 7.55964 8.01646 8.07257 8.63408 9.19422 9.56100 10.08157 10.77399 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029127 B = 0.002071 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.074725 B =13516.673051 C =13638.567965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.600 5.600 3 C 0.529 3.471 4 O -0.543 6.543 5 C -0.056 4.056 6 C -0.147 4.147 7 C -0.165 4.165 8 C -0.148 4.148 9 C -0.103 4.103 10 C -0.106 4.106 11 C 0.131 3.869 12 H 0.104 0.896 13 C -0.131 4.131 14 C 0.042 3.958 15 N -0.489 5.489 16 C 0.036 3.964 17 C 0.446 3.554 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.024 3.976 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.101 0.899 45 H 0.051 0.949 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.049 0.951 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 25.567 -4.066 25.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.331 5.331 3 C 0.317 3.683 4 O -0.420 6.420 5 C -0.059 4.059 6 C -0.205 4.205 7 C -0.183 4.183 8 C -0.166 4.166 9 C -0.140 4.140 10 C -0.143 4.143 11 C 0.027 3.973 12 H 0.122 0.878 13 C -0.170 4.170 14 C -0.086 4.086 15 N -0.213 5.213 16 C -0.096 4.096 17 C 0.231 3.769 18 O -0.461 6.461 19 N -0.203 5.203 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.105 4.105 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.119 0.881 45 H 0.069 0.931 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.779 25.478 -4.596 25.901 hybrid contribution 0.679 -1.105 0.515 1.395 sum 1.458 24.373 -4.081 24.755 Atomic orbital electron populations 1.22307 0.79386 1.04336 1.02429 1.47792 1.07136 1.05298 1.72914 1.20488 0.87620 0.85044 0.75178 1.90656 1.14327 1.87080 1.49934 1.20631 0.95989 0.93432 0.95873 1.22093 0.98797 1.03522 0.96041 1.23248 1.01135 0.98744 0.95172 1.23431 0.98715 0.95508 0.98985 1.21420 0.97960 0.97780 0.96873 1.22488 0.98576 0.93255 1.00018 1.21982 0.97576 0.82640 0.95127 0.87765 1.22862 1.02407 0.94801 0.96902 1.23257 0.98866 0.96175 0.90293 1.64485 1.54009 1.00919 1.01871 1.22074 0.97831 0.91892 0.97774 1.19682 0.87219 0.83958 0.86004 1.90501 1.39248 1.83613 1.32750 1.41855 1.36424 1.09791 1.32212 1.19633 1.17415 0.88689 1.17021 0.87999 1.25261 0.97589 0.99201 0.95971 1.69606 1.34986 1.28122 1.21705 0.85920 0.79925 0.80055 0.78322 1.19945 1.21014 1.19913 1.23259 0.98379 0.92181 0.96687 0.92290 0.89688 0.89640 0.90522 0.91931 0.91376 0.84724 0.85331 0.90794 0.90432 0.89354 0.90506 0.90080 0.90866 0.94109 0.88088 0.93129 0.89427 0.77533 0.91856 0.93224 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 7.24 59.84 0.43 0.94 16 2 N -0.60 -6.63 2.77 -172.39 -0.48 -7.11 16 3 C 0.53 6.33 6.53 -10.98 -0.07 6.26 16 4 O -0.54 -8.38 14.87 5.56 0.08 -8.29 16 5 C -0.06 -0.50 0.56 -155.76 -0.09 -0.59 16 6 C -0.15 -1.04 8.13 37.16 0.30 -0.74 16 7 C -0.17 -1.31 8.11 -35.77 -0.29 -1.60 16 8 C -0.15 -1.05 10.78 -35.77 -0.39 -1.43 16 9 C -0.10 -0.69 6.81 -26.83 -0.18 -0.87 16 10 C -0.11 -0.91 5.99 -25.01 -0.15 -1.06 16 11 C 0.13 1.63 3.40 -66.57 -0.23 1.40 16 12 H 0.10 1.42 6.97 -51.93 -0.36 1.06 16 13 C -0.13 -1.64 6.65 -24.87 -0.17 -1.81 16 14 C 0.04 0.65 5.94 -1.90 -0.01 0.64 16 15 N -0.49 -7.95 4.91 -231.89 -1.14 -9.09 16 16 C 0.04 0.64 5.19 -4.98 -0.03 0.62 16 17 C 0.45 10.47 7.61 -10.99 -0.08 10.38 16 18 O -0.58 -15.38 14.64 5.54 0.08 -15.30 16 19 N -0.57 -14.34 5.29 -10.97 -0.06 -14.39 16 20 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 23 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 24 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 28 C 0.02 0.32 5.85 -2.75 -0.02 0.30 16 29 H 0.06 0.48 7.01 -51.93 -0.36 0.12 16 30 H 0.08 0.86 6.93 -51.93 -0.36 0.50 16 31 H 0.09 0.60 3.27 -51.93 -0.17 0.43 16 32 H 0.08 0.50 4.49 -51.93 -0.23 0.27 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.14 0.98 6.41 -52.48 -0.34 0.65 16 36 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.94 7.04 -51.93 -0.37 0.58 16 40 H 0.08 0.59 7.90 -51.93 -0.41 0.18 16 41 H 0.08 1.00 6.75 -51.93 -0.35 0.65 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.62 7.81 -51.93 -0.41 0.21 16 44 H 0.10 1.84 7.10 -51.92 -0.37 1.47 16 45 H 0.05 0.83 7.83 -51.93 -0.41 0.43 16 46 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 47 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.05 0.64 7.77 -51.93 -0.40 0.23 16 50 H 0.08 1.05 7.06 -51.93 -0.37 0.68 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -32.54 384.92 -8.90 -41.44 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.69 Total: 10.29 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -1.20 Total: 4.50 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.95 Total: -54.48 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.16 Total: -23.59 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.54 -8.90 -41.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714012482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.177 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds