Wall clock time and date at job start Tue Mar 31 2020 18:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34781 * 120.00489 * 2 1 4 4 O 1.21274 * 120.00427 * 185.12256 * 3 2 1 5 5 C 1.50698 * 119.99631 * 5.11695 * 3 2 1 6 6 C 1.53000 * 110.34997 * 299.49313 * 5 3 2 7 7 C 1.51104 * 110.38749 * 61.77920 * 5 3 2 8 8 C 1.30796 * 110.94728 * 135.35769 * 7 5 3 9 9 C 1.51099 * 111.15379 * 359.95319 * 8 7 5 10 10 C 1.54633 * 110.38689 * 177.20089 * 5 3 2 11 11 C 1.46499 * 120.00076 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.27971 * 177.91272 * 11 2 1 13 13 C 1.54599 * 110.30849 * 55.71331 * 11 2 1 14 14 C 1.54931 * 102.92443 * 219.12806 * 13 11 2 15 15 N 1.48534 * 103.22673 * 37.41699 * 14 13 11 16 16 C 1.46900 * 110.99778 * 200.27764 * 15 14 13 17 17 C 1.50694 * 109.47547 * 287.39477 * 16 15 14 18 18 O 1.21297 * 119.99822 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00450 * 180.02562 * 17 16 15 20 20 C 1.37091 * 120.00017 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00462 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99911 * 179.97438 * 20 19 17 23 23 N 1.31419 * 120.00130 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00052 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47290 * 59.99980 * 24 22 20 26 26 H 1.48508 * 109.47241 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47320 * 299.99829 * 24 22 20 28 28 C 1.47903 * 105.81643 * 320.78971 * 15 14 13 29 29 H 1.08999 * 109.47511 * 93.39990 * 1 2 3 30 30 H 1.09004 * 109.47450 * 213.40739 * 1 2 3 31 31 H 1.09004 * 109.47402 * 333.40491 * 1 2 3 32 32 H 1.09002 * 109.46924 * 59.29416 * 6 5 3 33 33 H 1.09000 * 109.46774 * 299.29982 * 6 5 3 34 34 H 1.08995 * 109.47766 * 179.30071 * 6 5 3 35 35 H 1.08004 * 124.44838 * 315.36003 * 7 5 3 36 36 H 1.08008 * 124.39869 * 179.97438 * 8 7 5 37 37 H 1.09000 * 110.38952 * 224.78520 * 9 8 7 38 38 H 1.08998 * 110.48264 * 102.45236 * 9 8 7 39 39 H 1.09003 * 111.03865 * 334.47900 * 10 5 3 40 40 H 1.09003 * 111.03673 * 98.40951 * 10 5 3 41 41 H 1.09000 * 110.72301 * 337.48952 * 13 11 2 42 42 H 1.09005 * 110.72405 * 100.76777 * 13 11 2 43 43 H 1.09002 * 110.67233 * 278.97881 * 14 13 11 44 44 H 1.09008 * 110.80893 * 155.91629 * 14 13 11 45 45 H 1.09007 * 109.47340 * 47.39567 * 16 15 14 46 46 H 1.09002 * 109.47078 * 167.39103 * 16 15 14 47 47 H 0.96995 * 119.99691 * 359.97438 * 19 17 16 48 48 H 0.96993 * 119.99793 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.91711 * 265.97672 * 28 15 14 50 50 H 1.09004 * 110.07479 * 144.78013 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3480 1.1693 -0.0938 5 6 1.3899 2.4697 0.1164 6 6 0.4187 2.6314 -1.0546 7 6 0.6458 2.5334 1.4300 8 6 0.7989 3.7017 1.9978 9 6 1.6697 4.6065 1.1576 10 6 2.3790 3.6574 0.1640 11 6 2.1974 -1.2687 0.0006 12 1 3.2712 -1.0850 -0.0368 13 6 1.7584 -2.1423 -1.1970 14 6 1.7258 -3.5683 -0.5921 15 7 1.2062 -3.3432 0.7810 16 6 1.5443 -4.4684 1.6628 17 6 0.6962 -5.6610 1.3033 18 8 -0.1103 -5.5817 0.4008 19 7 0.8338 -6.8158 1.9844 20 6 0.0619 -7.9006 1.6575 21 1 -0.6562 -7.8300 0.8540 22 6 0.2042 -9.0913 2.3594 23 7 1.0783 -9.1775 3.3369 24 14 -0.8471 -10.5696 1.9136 25 1 -0.5900 -10.9523 0.5020 26 1 -0.5057 -11.7069 2.8054 27 1 -2.2820 -10.2248 2.0794 28 6 1.8393 -2.0921 1.2516 29 1 -0.3634 -0.0609 -1.0258 30 1 -0.3634 -0.8579 0.5658 31 1 -0.3634 0.9189 0.4601 32 1 -0.2885 1.8019 -1.0573 33 1 0.9764 2.6364 -1.9912 34 1 -0.1237 3.5710 -0.9498 35 1 0.0656 1.7218 1.8434 36 1 0.3601 3.9824 2.9440 37 1 2.4018 5.1171 1.7833 38 1 1.0591 5.3318 0.6199 39 1 3.3496 3.3432 0.5478 40 1 2.4798 4.1221 -0.8169 41 1 0.7684 -1.8487 -1.5462 42 1 2.4871 -2.0828 -2.0055 43 1 2.7281 -3.9953 -0.5590 44 1 1.0528 -4.2133 -1.1572 45 1 2.5976 -4.7216 1.5412 46 1 1.3556 -4.1875 2.6990 47 1 1.4790 -6.8794 2.7058 48 1 1.1779 -10.0088 3.8265 49 1 2.7430 -2.3227 1.8157 50 1 1.1436 -1.5332 1.8775 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714012482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:17 Heat of formation + Delta-G solvation = -48.270870 kcal Electronic energy + Delta-G solvation = -29538.516933 eV Core-core repulsion = 25565.803112 eV Total energy + Delta-G solvation = -3972.713822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.99585 -40.59917 -39.48740 -38.45301 -36.45756 -35.83298 -33.36820 -32.94429 -31.71190 -30.05884 -29.48816 -28.35304 -27.83172 -26.36575 -25.85507 -23.27177 -22.51216 -21.08443 -20.98425 -20.38910 -19.93046 -19.81438 -18.01836 -17.71929 -17.58738 -16.83762 -16.55004 -16.39854 -16.20427 -15.93614 -15.79802 -15.54881 -15.12457 -14.63509 -14.34243 -14.30721 -14.04939 -13.87981 -13.59264 -13.41047 -13.38397 -13.22300 -13.13038 -12.95382 -12.76940 -12.67959 -12.59853 -12.48773 -12.42138 -12.25917 -12.16259 -12.12176 -12.05002 -11.79095 -11.59881 -11.46248 -10.74724 -10.32543 -9.99879 -9.86308 -9.68354 -9.36569 -8.45384 -5.93990 1.20021 1.40203 1.41763 1.52707 1.62730 1.94522 2.06863 2.28967 2.78114 3.21025 3.35463 3.38896 3.51798 3.62406 3.67701 3.86558 4.01973 4.07467 4.19864 4.22506 4.24796 4.33003 4.37426 4.41687 4.43558 4.50787 4.59437 4.62126 4.67556 4.73964 4.76934 4.77403 4.88661 4.94631 4.98467 5.01624 5.03847 5.10607 5.19305 5.22886 5.32963 5.41567 5.51547 5.56227 5.81841 5.88447 5.91791 6.06740 6.38094 6.61715 7.10700 7.14038 7.57757 8.13490 8.71891 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029127 B = 0.002071 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.074725 B =13516.673051 C =13638.567965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.597 5.597 3 C 0.524 3.476 4 O -0.584 6.584 5 C -0.053 4.053 6 C -0.145 4.145 7 C -0.182 4.182 8 C -0.141 4.141 9 C -0.101 4.101 10 C -0.110 4.110 11 C 0.136 3.864 12 H 0.094 0.906 13 C -0.118 4.118 14 C 0.042 3.958 15 N -0.503 5.503 16 C 0.048 3.952 17 C 0.445 3.555 18 O -0.613 6.613 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.271 1.271 28 C 0.031 3.969 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.108 0.892 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.057 0.943 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 27.060 -3.599 27.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.327 5.327 3 C 0.313 3.687 4 O -0.464 6.464 5 C -0.056 4.056 6 C -0.202 4.202 7 C -0.200 4.200 8 C -0.158 4.158 9 C -0.137 4.137 10 C -0.148 4.148 11 C 0.031 3.969 12 H 0.112 0.888 13 C -0.157 4.157 14 C -0.086 4.086 15 N -0.228 5.228 16 C -0.084 4.084 17 C 0.232 3.768 18 O -0.498 6.498 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.098 4.098 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.126 0.874 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.043 26.988 -4.117 27.301 hybrid contribution 0.930 -1.505 0.358 1.805 sum 0.974 25.483 -3.759 25.778 Atomic orbital electron populations 1.22449 0.77875 1.04961 1.03149 1.47840 1.07966 1.04615 1.72315 1.21124 0.87323 0.86095 0.74131 1.90635 1.16211 1.87712 1.51855 1.20680 0.96141 0.91477 0.97338 1.22099 0.98437 1.04696 0.94919 1.23269 1.02117 0.99553 0.95040 1.23678 0.97762 0.95106 0.99286 1.21447 0.98120 0.97612 0.96569 1.22491 0.97541 0.93840 1.00909 1.21795 0.97210 0.83254 0.94626 0.88828 1.22761 1.02999 0.92788 0.97124 1.23159 0.97972 0.97436 0.90034 1.64422 1.55033 1.01357 1.01943 1.21939 0.97334 0.90092 0.99039 1.20657 0.86775 0.84730 0.84644 1.90476 1.40859 1.84394 1.34086 1.41931 1.36596 1.10088 1.32781 1.19611 1.18432 0.90400 1.17562 0.90230 1.26050 0.98538 1.01303 0.95588 1.69673 1.35615 1.28999 1.22022 0.84988 0.78251 0.76876 0.78222 1.19720 1.19622 1.19645 1.23241 0.98699 0.90735 0.97089 0.91301 0.90785 0.87509 0.89908 0.92488 0.89686 0.84149 0.83551 0.90192 0.88605 0.92002 0.89844 0.89749 0.89702 0.93841 0.91292 0.91370 0.87359 0.77130 0.91372 0.92433 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 7.24 127.77 0.92 1.84 16 2 N -0.60 -12.53 2.77 -817.70 -2.27 -14.80 16 3 C 0.52 12.18 6.53 87.66 0.57 12.76 16 4 O -0.58 -18.19 14.87 -3.01 -0.04 -18.23 16 5 C -0.05 -0.87 0.56 -52.99 -0.03 -0.90 16 6 C -0.14 -1.74 8.13 71.98 0.59 -1.15 16 7 C -0.18 -2.48 8.11 25.98 0.21 -2.27 16 8 C -0.14 -1.61 10.78 25.98 0.28 -1.33 16 9 C -0.10 -1.11 6.81 30.53 0.21 -0.90 16 10 C -0.11 -1.78 5.99 31.71 0.19 -1.59 16 11 C 0.14 3.27 3.40 45.87 0.16 3.43 16 12 H 0.09 2.52 6.97 -2.39 -0.02 2.50 16 13 C -0.12 -2.88 6.65 31.80 0.21 -2.67 16 14 C 0.04 1.31 5.94 86.65 0.51 1.82 16 15 N -0.50 -16.05 4.91 -887.56 -4.35 -20.41 16 16 C 0.05 1.66 5.19 85.56 0.44 2.10 16 17 C 0.44 21.16 7.61 87.66 0.67 21.83 16 18 O -0.61 -33.52 14.64 -3.08 -0.05 -33.56 16 19 N -0.58 -29.70 5.29 -307.00 -1.62 -31.33 16 20 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 23 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 24 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 C 0.03 0.78 5.85 86.45 0.51 1.28 16 29 H 0.07 0.99 7.01 -2.39 -0.02 0.97 16 30 H 0.07 1.39 6.93 -2.39 -0.02 1.38 16 31 H 0.11 1.26 3.27 -2.38 -0.01 1.26 16 32 H 0.08 0.88 4.49 -2.39 -0.01 0.87 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.14 1.71 6.41 -2.91 -0.02 1.70 16 36 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 1.34 7.04 -2.39 -0.02 1.32 16 40 H 0.08 1.19 7.90 -2.39 -0.02 1.17 16 41 H 0.08 2.01 6.75 -2.39 -0.02 1.99 16 42 H 0.08 1.88 8.14 -2.38 -0.02 1.87 16 43 H 0.04 1.31 7.81 -2.39 -0.02 1.29 16 44 H 0.07 2.60 7.10 -2.38 -0.02 2.58 16 45 H 0.07 2.17 7.83 -2.38 -0.02 2.15 16 46 H 0.11 3.35 8.08 -2.39 -0.02 3.33 16 47 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 48 H 0.28 14.13 8.31 -92.71 -0.77 13.35 16 49 H 0.06 1.38 7.77 -2.39 -0.02 1.36 16 50 H 0.09 2.15 7.06 -2.38 -0.02 2.14 16 Total: -1.00 -71.47 384.92 0.93 -70.54 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: 0.23 Total: 36.57 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 6.72 Total: 15.92 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -7.96 Total: -116.32 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -0.09 Total: -51.80 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.47 0.93 -70.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714012482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.272 kcal (2) G-P(sol) polarization free energy of solvation -71.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds