Wall clock time and date at job start Tue Mar 31 2020 18:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 110.91134 * 2 1 4 4 O 1.21280 * 120.00050 * 239.30182 * 3 2 1 5 5 N 1.34772 * 119.99881 * 59.29766 * 3 2 1 6 6 C 1.46508 * 119.99789 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47065 * 180.02562 * 6 5 3 8 8 H 1.08998 * 110.35246 * 307.14296 * 7 6 5 9 9 C 1.54597 * 110.31107 * 69.28110 * 7 6 5 10 10 C 1.54936 * 102.91999 * 140.87425 * 9 7 6 11 11 N 1.48542 * 103.23034 * 322.58734 * 10 9 7 12 12 C 1.46893 * 111.00222 * 159.72082 * 11 10 9 13 13 C 1.50708 * 109.47146 * 52.60642 * 12 11 10 14 14 O 1.21288 * 119.99815 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99719 * 180.02562 * 13 12 11 16 16 C 1.37101 * 119.99349 * 180.02562 * 15 13 12 17 17 H 1.07991 * 120.00515 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99490 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00236 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99845 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48502 * 109.47194 * 300.00675 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00238 * 20 18 16 24 24 C 1.47906 * 105.81487 * 39.20545 * 11 10 9 25 25 C 1.54633 * 111.03981 * 123.96323 * 2 1 3 26 26 C 1.51205 * 104.66996 * 142.69302 * 25 2 1 27 27 C 1.30525 * 111.11920 * 343.55839 * 26 25 2 28 28 C 1.51107 * 111.10074 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47487 * 60.69972 * 1 2 3 30 30 H 1.09004 * 109.46794 * 180.70164 * 1 2 3 31 31 H 1.09000 * 109.47028 * 300.70081 * 1 2 3 32 32 H 0.96999 * 120.00709 * 0.02562 * 5 3 2 33 33 H 1.08995 * 109.46996 * 60.00602 * 6 5 3 34 34 H 1.09004 * 109.47311 * 300.00130 * 6 5 3 35 35 H 1.08998 * 110.72504 * 259.23418 * 9 7 6 36 36 H 1.09003 * 110.72153 * 22.51904 * 9 7 6 37 37 H 1.09001 * 110.66896 * 204.15732 * 10 9 7 38 38 H 1.08998 * 110.66946 * 81.02629 * 10 9 7 39 39 H 1.09002 * 109.47091 * 292.60813 * 12 11 10 40 40 H 1.09000 * 109.47343 * 172.60431 * 12 11 10 41 41 H 0.96996 * 120.00564 * 359.97438 * 15 13 12 42 42 H 0.97001 * 119.99781 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.91096 * 94.02703 * 24 11 10 44 44 H 1.08997 * 109.91366 * 215.31942 * 24 11 10 45 45 H 1.08997 * 110.38682 * 261.51918 * 25 2 1 46 46 H 1.09003 * 110.38551 * 23.89962 * 25 2 1 47 47 H 1.08007 * 124.43436 * 163.58288 * 26 25 2 48 48 H 1.08002 * 124.44886 * 180.02562 * 27 26 25 49 49 H 1.08994 * 110.38526 * 257.61845 * 28 27 26 50 50 H 1.08999 * 110.38367 * 135.24572 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0679 1.4078 0.0000 4 8 2.7852 1.7829 -0.9031 5 7 1.7517 2.2499 1.0036 6 6 2.2751 3.6183 1.0038 7 6 1.7696 4.3574 2.2444 8 1 0.6842 4.2850 2.3128 9 6 2.4271 3.7794 3.5186 10 6 2.6899 5.0427 4.3763 11 7 3.0833 6.0615 3.3694 12 6 2.9115 7.4202 3.9005 13 6 3.6272 7.5375 5.2216 14 8 4.2215 6.5828 5.6762 15 7 3.6061 8.7028 5.8983 16 6 4.2576 8.8095 7.0999 17 1 4.7874 7.9598 7.5043 18 6 4.2362 10.0111 7.7974 19 7 3.5919 11.0453 7.3051 20 14 5.1234 10.1565 9.4349 21 1 4.9503 11.5302 9.9715 22 1 4.5563 9.1746 10.3939 23 1 6.5694 9.8801 9.2406 24 6 2.2050 5.8339 2.2013 25 6 2.0852 -0.8063 1.1970 26 6 3.3086 -1.5079 0.6517 27 6 3.3081 -1.5078 -0.6535 28 6 2.0853 -0.8059 -1.1970 29 1 -0.3634 0.5029 -0.8961 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 1.1783 1.9499 1.7261 33 1 1.9354 4.1374 0.1077 34 1 3.3647 3.5906 1.0167 35 1 1.7452 3.1005 4.0305 36 1 3.3633 3.2767 3.2754 37 1 3.5014 4.8663 5.0823 38 1 1.7835 5.3482 4.8989 39 1 1.8501 7.6231 4.0431 40 1 3.3279 8.1408 3.1966 41 1 3.1305 9.4661 5.5350 42 1 3.5767 11.8840 7.7923 43 1 1.3302 6.4811 2.2630 44 1 2.7532 6.0326 1.2804 45 1 2.3621 -0.1359 2.0106 46 1 1.3496 -1.5350 1.5378 47 1 4.0812 -1.9514 1.2623 48 1 4.0803 -1.9511 -1.2648 49 1 1.3495 -1.5343 -1.5379 50 1 2.3625 -0.1357 -2.0107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714649367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:30 Heat of formation + Delta-G solvation = -52.237271 kcal Electronic energy + Delta-G solvation = -28681.311023 eV Core-core repulsion = 24708.425205 eV Total energy + Delta-G solvation = -3972.885818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.87450 -39.39853 -38.06898 -37.44891 -35.11665 -33.93418 -32.57997 -31.64331 -31.17483 -29.30134 -28.52132 -27.18105 -26.02469 -25.18301 -23.99266 -22.48628 -21.15283 -20.48971 -19.37650 -19.22660 -19.18351 -17.88579 -17.35289 -16.55626 -16.12263 -15.85469 -15.52809 -15.30024 -14.97679 -14.62919 -14.49629 -14.00156 -13.88626 -13.65268 -13.48037 -13.37136 -13.09841 -13.00781 -12.62110 -12.51298 -12.45518 -12.26207 -12.01291 -11.72410 -11.62034 -11.55013 -11.50447 -11.27063 -11.14861 -11.07330 -10.94483 -10.72484 -10.57074 -10.41228 -10.23306 -9.94482 -9.49582 -9.29082 -9.16589 -8.37303 -8.02543 -7.90274 -6.43553 -3.84519 1.97262 2.44191 2.92241 3.18611 3.24662 3.28887 3.87719 4.01184 4.07638 4.22313 4.29141 4.33834 4.53298 4.59769 4.69680 4.81521 4.89951 4.98746 5.08254 5.15980 5.23116 5.27960 5.29715 5.34603 5.37717 5.42385 5.48809 5.51461 5.60733 5.62499 5.66156 5.69645 5.77412 5.79711 5.87602 5.90098 5.99172 6.07649 6.20842 6.24787 6.26403 6.33722 6.56606 6.67984 7.23591 7.28289 7.30433 7.53327 8.02738 8.03917 8.59604 9.15841 9.51733 10.03449 10.73983 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.001819 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.786155 B =15389.230826 C =15822.960748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 C 0.529 3.471 4 O -0.535 6.535 5 N -0.726 5.726 6 C 0.130 3.870 7 C -0.110 4.110 8 H 0.078 0.922 9 C -0.122 4.122 10 C 0.038 3.962 11 N -0.495 5.495 12 C 0.036 3.964 13 C 0.442 3.558 14 O -0.581 6.581 15 N -0.561 5.561 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.284 1.284 22 H -0.274 1.274 23 H -0.273 1.273 24 C 0.041 3.959 25 C -0.087 4.087 26 C -0.176 4.176 27 C -0.155 4.155 28 C -0.085 4.085 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.399 0.601 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.035 0.965 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.126 0.874 48 H 0.125 0.875 49 H 0.082 0.918 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.833 -20.957 -14.555 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.094 4.094 3 C 0.314 3.686 4 O -0.412 6.412 5 N -0.377 5.377 6 C 0.007 3.993 7 C -0.130 4.130 8 H 0.097 0.903 9 C -0.161 4.161 10 C -0.089 4.089 11 N -0.219 5.219 12 C -0.095 4.095 13 C 0.227 3.773 14 O -0.466 6.466 15 N -0.198 5.198 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.210 1.210 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.088 4.088 25 C -0.125 4.125 26 C -0.194 4.194 27 C -0.173 4.173 28 C -0.123 4.123 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.233 0.767 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.136 0.864 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.144 0.856 48 H 0.143 0.857 49 H 0.100 0.900 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.386 -21.116 -14.960 27.203 hybrid contribution -0.995 0.788 1.186 1.737 sum -9.381 -20.328 -13.774 26.286 Atomic orbital electron populations 1.21772 0.91695 1.03033 1.02688 1.21646 0.96978 0.92431 0.98318 1.20211 0.80192 0.86566 0.81586 1.90691 1.36916 1.77393 1.36166 1.45977 1.52474 1.13297 1.25981 1.21489 0.99538 0.80758 0.97517 1.22254 1.00143 0.95563 0.95025 0.90346 1.22689 1.00552 0.98068 0.94745 1.23474 1.00948 0.89553 0.94906 1.64616 1.49500 1.02262 1.05573 1.22101 0.98834 0.91732 0.96874 1.19712 0.86376 0.84486 0.86696 1.90433 1.48061 1.37765 1.70332 1.41848 1.47155 1.11069 1.19684 1.19651 1.28919 0.98463 0.95915 0.87934 1.25275 0.97641 0.95014 1.00006 1.69606 1.42353 1.02516 1.39757 0.85910 0.79785 0.77166 0.81309 1.20973 1.19925 1.19861 1.22892 0.95543 0.94078 0.96252 1.21475 0.96233 0.98194 0.96551 1.23233 0.98452 1.01372 0.96329 1.23254 0.98207 0.99599 0.96230 1.21369 0.95540 0.97849 0.97498 0.91763 0.91146 0.91883 0.76654 0.91504 0.90709 0.91542 0.90602 0.86391 0.94692 0.93385 0.89203 0.77440 0.91793 0.93578 0.90148 0.90636 0.89518 0.85627 0.85693 0.90002 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.72 8.39 37.16 0.31 -0.41 16 2 C -0.09 -0.70 0.83 -153.95 -0.13 -0.83 16 3 C 0.53 5.68 6.52 -10.99 -0.07 5.61 16 4 O -0.54 -7.96 15.51 5.56 0.09 -7.88 16 5 N -0.73 -6.51 5.17 -60.29 -0.31 -6.82 16 6 C 0.13 1.36 4.76 -4.04 -0.02 1.34 16 7 C -0.11 -1.13 3.03 -89.27 -0.27 -1.40 16 8 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 9 C -0.12 -1.44 6.41 -24.87 -0.16 -1.60 16 10 C 0.04 0.62 5.30 -1.89 -0.01 0.61 16 11 N -0.50 -8.23 5.26 -231.88 -1.22 -9.45 16 12 C 0.04 0.65 5.52 -4.98 -0.03 0.62 16 13 C 0.44 10.33 7.49 -10.98 -0.08 10.25 16 14 O -0.58 -15.26 13.09 5.55 0.07 -15.19 16 15 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 16 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 17 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 20 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.04 0.51 6.36 -2.75 -0.02 0.50 16 25 C -0.09 -0.60 5.93 -26.78 -0.16 -0.76 16 26 C -0.18 -1.41 10.78 -35.65 -0.38 -1.80 16 27 C -0.16 -1.30 10.78 -35.69 -0.38 -1.68 16 28 C -0.09 -0.70 5.75 -26.83 -0.15 -0.85 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 31 H 0.06 0.27 7.64 -51.93 -0.40 -0.13 16 32 H 0.40 2.64 7.88 -40.82 -0.32 2.32 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.94 7.99 -51.93 -0.42 0.52 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.96 7.76 -51.93 -0.40 0.55 16 37 H 0.12 2.35 5.97 -51.93 -0.31 2.04 16 38 H 0.03 0.58 8.02 -51.93 -0.42 0.16 16 39 H 0.05 0.78 7.81 -51.93 -0.41 0.38 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 43 H 0.05 0.54 7.57 -51.93 -0.39 0.14 16 44 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 45 H 0.08 0.53 7.76 -51.93 -0.40 0.13 16 46 H 0.09 0.46 7.87 -51.93 -0.41 0.05 16 47 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 48 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 49 H 0.08 0.52 7.89 -51.93 -0.41 0.11 16 50 H 0.09 0.90 6.97 -51.93 -0.36 0.54 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -32.79 398.38 -9.78 -42.57 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -8.26 Total: 11.08 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.80 Total: 1.65 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.87 Total: -54.16 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.16 Total: -23.06 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.79 -9.78 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714649367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.670 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds