Wall clock time and date at job start Tue Mar 31 2020 18:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 110.91134 * 2 1 4 4 O 1.21280 * 120.00050 * 239.30182 * 3 2 1 5 5 N 1.34772 * 119.99881 * 59.29766 * 3 2 1 6 6 C 1.46508 * 119.99789 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47065 * 180.02562 * 6 5 3 8 8 H 1.08998 * 110.35246 * 307.14296 * 7 6 5 9 9 C 1.54597 * 110.31107 * 69.28110 * 7 6 5 10 10 C 1.54936 * 102.91999 * 140.87425 * 9 7 6 11 11 N 1.48542 * 103.23034 * 322.58734 * 10 9 7 12 12 C 1.46893 * 111.00222 * 159.72082 * 11 10 9 13 13 C 1.50708 * 109.47146 * 52.60642 * 12 11 10 14 14 O 1.21288 * 119.99815 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99719 * 180.02562 * 13 12 11 16 16 C 1.37101 * 119.99349 * 180.02562 * 15 13 12 17 17 H 1.07991 * 120.00515 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99490 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00236 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99845 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48502 * 109.47194 * 300.00675 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00238 * 20 18 16 24 24 C 1.47906 * 105.81487 * 39.20545 * 11 10 9 25 25 C 1.54633 * 111.03981 * 123.96323 * 2 1 3 26 26 C 1.51205 * 104.66996 * 142.69302 * 25 2 1 27 27 C 1.30525 * 111.11920 * 343.55839 * 26 25 2 28 28 C 1.51107 * 111.10074 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47487 * 60.69972 * 1 2 3 30 30 H 1.09004 * 109.46794 * 180.70164 * 1 2 3 31 31 H 1.09000 * 109.47028 * 300.70081 * 1 2 3 32 32 H 0.96999 * 120.00709 * 0.02562 * 5 3 2 33 33 H 1.08995 * 109.46996 * 60.00602 * 6 5 3 34 34 H 1.09004 * 109.47311 * 300.00130 * 6 5 3 35 35 H 1.08998 * 110.72504 * 259.23418 * 9 7 6 36 36 H 1.09003 * 110.72153 * 22.51904 * 9 7 6 37 37 H 1.09001 * 110.66896 * 204.15732 * 10 9 7 38 38 H 1.08998 * 110.66946 * 81.02629 * 10 9 7 39 39 H 1.09002 * 109.47091 * 292.60813 * 12 11 10 40 40 H 1.09000 * 109.47343 * 172.60431 * 12 11 10 41 41 H 0.96996 * 120.00564 * 359.97438 * 15 13 12 42 42 H 0.97001 * 119.99781 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.91096 * 94.02703 * 24 11 10 44 44 H 1.08997 * 109.91366 * 215.31942 * 24 11 10 45 45 H 1.08997 * 110.38682 * 261.51918 * 25 2 1 46 46 H 1.09003 * 110.38551 * 23.89962 * 25 2 1 47 47 H 1.08007 * 124.43436 * 163.58288 * 26 25 2 48 48 H 1.08002 * 124.44886 * 180.02562 * 27 26 25 49 49 H 1.08994 * 110.38526 * 257.61845 * 28 27 26 50 50 H 1.08999 * 110.38367 * 135.24572 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0679 1.4078 0.0000 4 8 2.7852 1.7829 -0.9031 5 7 1.7517 2.2499 1.0036 6 6 2.2751 3.6183 1.0038 7 6 1.7696 4.3574 2.2444 8 1 0.6842 4.2850 2.3128 9 6 2.4271 3.7794 3.5186 10 6 2.6899 5.0427 4.3763 11 7 3.0833 6.0615 3.3694 12 6 2.9115 7.4202 3.9005 13 6 3.6272 7.5375 5.2216 14 8 4.2215 6.5828 5.6762 15 7 3.6061 8.7028 5.8983 16 6 4.2576 8.8095 7.0999 17 1 4.7874 7.9598 7.5043 18 6 4.2362 10.0111 7.7974 19 7 3.5919 11.0453 7.3051 20 14 5.1234 10.1565 9.4349 21 1 4.9503 11.5302 9.9715 22 1 4.5563 9.1746 10.3939 23 1 6.5694 9.8801 9.2406 24 6 2.2050 5.8339 2.2013 25 6 2.0852 -0.8063 1.1970 26 6 3.3086 -1.5079 0.6517 27 6 3.3081 -1.5078 -0.6535 28 6 2.0853 -0.8059 -1.1970 29 1 -0.3634 0.5029 -0.8961 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8836 32 1 1.1783 1.9499 1.7261 33 1 1.9354 4.1374 0.1077 34 1 3.3647 3.5906 1.0167 35 1 1.7452 3.1005 4.0305 36 1 3.3633 3.2767 3.2754 37 1 3.5014 4.8663 5.0823 38 1 1.7835 5.3482 4.8989 39 1 1.8501 7.6231 4.0431 40 1 3.3279 8.1408 3.1966 41 1 3.1305 9.4661 5.5350 42 1 3.5767 11.8840 7.7923 43 1 1.3302 6.4811 2.2630 44 1 2.7532 6.0326 1.2804 45 1 2.3621 -0.1359 2.0106 46 1 1.3496 -1.5350 1.5378 47 1 4.0812 -1.9514 1.2623 48 1 4.0803 -1.9511 -1.2648 49 1 1.3495 -1.5343 -1.5379 50 1 2.3625 -0.1357 -2.0107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714649367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:29 Heat of formation + Delta-G solvation = -75.918541 kcal Electronic energy + Delta-G solvation = -28682.337920 eV Core-core repulsion = 24708.425205 eV Total energy + Delta-G solvation = -3973.912715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.62377 -40.76334 -39.37584 -38.48167 -36.26180 -35.77634 -33.55290 -33.22180 -32.36910 -30.35119 -29.13330 -28.59678 -26.78369 -26.36028 -25.43370 -23.27302 -22.40895 -21.40119 -21.05012 -20.10797 -19.87169 -19.81531 -18.05692 -17.81793 -17.29744 -16.88812 -16.59280 -16.49759 -16.26630 -15.90964 -15.84189 -15.60932 -15.18990 -14.69441 -14.55013 -14.13375 -13.95403 -13.79366 -13.66164 -13.54115 -13.46173 -13.18864 -13.15174 -13.06579 -12.91757 -12.82825 -12.43861 -12.36105 -12.20148 -12.14491 -12.13408 -12.08312 -11.83591 -11.62499 -11.55808 -11.44323 -10.79210 -10.18664 -10.08715 -10.00760 -9.79718 -9.28380 -8.47231 -5.95951 1.36525 1.38975 1.41146 1.52016 1.63723 2.03318 2.16020 2.28487 2.89333 3.19636 3.34717 3.43386 3.57336 3.64948 3.71531 3.80724 3.88634 4.10888 4.28438 4.33438 4.34079 4.40692 4.42754 4.49574 4.50889 4.60978 4.69547 4.70497 4.76313 4.79340 4.83022 4.90048 4.94616 4.95254 5.01272 5.05469 5.10886 5.14679 5.27532 5.31191 5.32243 5.41077 5.45923 5.64377 5.88289 5.96019 6.00478 6.14500 6.56045 6.59933 7.12017 7.26064 7.54640 8.10596 8.69887 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.001819 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.786155 B =15389.230826 C =15822.960748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C 0.524 3.476 4 O -0.584 6.584 5 N -0.713 5.713 6 C 0.138 3.862 7 C -0.093 4.093 8 H 0.109 0.891 9 C -0.110 4.110 10 C 0.037 3.963 11 N -0.518 5.518 12 C 0.048 3.952 13 C 0.438 3.562 14 O -0.614 6.614 15 N -0.572 5.572 16 C -0.333 4.333 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.920 5.920 20 Si 0.993 3.007 21 H -0.271 1.271 22 H -0.271 1.271 23 H -0.273 1.273 24 C 0.039 3.961 25 C -0.085 4.085 26 C -0.183 4.183 27 C -0.174 4.174 28 C -0.087 4.087 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.414 0.586 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.112 0.888 47 H 0.132 0.868 48 H 0.127 0.873 49 H 0.102 0.898 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.976 -21.843 -14.474 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 C 0.311 3.689 4 O -0.464 6.464 5 N -0.365 5.365 6 C 0.014 3.986 7 C -0.113 4.113 8 H 0.127 0.873 9 C -0.148 4.148 10 C -0.090 4.090 11 N -0.243 5.243 12 C -0.083 4.083 13 C 0.226 3.774 14 O -0.500 6.500 15 N -0.210 5.210 16 C -0.462 4.462 17 H 0.097 0.903 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.817 3.183 21 H -0.195 1.195 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.089 4.089 25 C -0.122 4.122 26 C -0.201 4.201 27 C -0.192 4.192 28 C -0.125 4.125 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.251 0.749 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.130 0.870 47 H 0.150 0.850 48 H 0.145 0.855 49 H 0.120 0.880 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.567 -22.006 -14.874 28.585 hybrid contribution -0.284 1.027 1.116 1.543 sum -10.851 -20.979 -13.758 27.334 Atomic orbital electron populations 1.21806 0.89413 1.04479 1.03196 1.21671 0.98612 0.90226 0.98434 1.20829 0.79365 0.87780 0.80947 1.90673 1.39166 1.78488 1.38088 1.45853 1.52047 1.12554 1.26003 1.21298 0.98077 0.81607 0.97657 1.22154 1.01605 0.93767 0.93730 0.87296 1.22601 1.00996 0.96398 0.94837 1.23291 0.98953 0.91780 0.94997 1.64568 1.51643 1.01430 1.06698 1.21986 0.99260 0.93299 0.93794 1.20737 0.85426 0.83252 0.88022 1.90436 1.49258 1.38712 1.71631 1.41923 1.47619 1.11877 1.19538 1.19621 1.30494 0.98496 0.97631 0.90254 1.26053 0.97987 0.94291 1.03017 1.69669 1.42703 1.02821 1.40894 0.84985 0.78408 0.77686 0.77234 1.19501 1.19576 1.19853 1.22987 0.95604 0.95931 0.94392 1.21535 0.96245 0.98455 0.95955 1.23500 0.99115 1.01124 0.96374 1.23430 0.98732 1.00304 0.96750 1.21400 0.96115 0.97863 0.97072 0.92322 0.89294 0.90313 0.74866 0.91436 0.93280 0.88577 0.91771 0.90838 0.95035 0.91114 0.87624 0.77038 0.91297 0.91791 0.89724 0.90555 0.87028 0.84978 0.85477 0.88007 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 8.39 71.98 0.60 -0.39 16 2 C -0.09 -1.17 0.83 -51.82 -0.04 -1.22 16 3 C 0.52 10.71 6.52 87.66 0.57 11.28 16 4 O -0.58 -17.65 15.51 -3.03 -0.05 -17.69 16 5 N -0.71 -11.28 5.17 -463.05 -2.39 -13.67 16 6 C 0.14 2.64 4.76 86.38 0.41 3.05 16 7 C -0.09 -1.65 3.03 -9.92 -0.03 -1.68 16 8 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 9 C -0.11 -2.40 6.41 31.80 0.20 -2.19 16 10 C 0.04 1.20 5.30 86.65 0.46 1.66 16 11 N -0.52 -16.84 5.26 -887.55 -4.67 -21.51 16 12 C 0.05 1.68 5.52 85.56 0.47 2.15 16 13 C 0.44 20.90 7.49 87.66 0.66 21.56 16 14 O -0.61 -33.50 13.09 -3.05 -0.04 -33.54 16 15 N -0.57 -29.47 5.29 -306.98 -1.62 -31.09 16 16 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 17 H 0.08 4.78 7.16 -2.92 -0.02 4.76 16 18 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 19 N -0.92 -49.67 13.05 21.66 0.28 -49.39 16 20 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.04 0.88 6.36 86.44 0.55 1.43 16 25 C -0.08 -0.97 5.93 30.56 0.18 -0.79 16 26 C -0.18 -2.72 10.78 26.30 0.28 -2.44 16 27 C -0.17 -2.85 10.78 26.27 0.28 -2.56 16 28 C -0.09 -1.37 5.75 30.53 0.18 -1.19 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 0.38 8.12 -2.38 -0.02 0.36 16 31 H 0.08 0.36 7.64 -2.39 -0.02 0.34 16 32 H 0.41 4.03 7.88 -92.71 -0.73 3.30 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.22 7.99 -2.38 -0.02 1.20 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.56 7.76 -2.39 -0.02 1.54 16 37 H 0.07 3.05 5.97 -2.39 -0.01 3.03 16 38 H 0.03 1.02 8.02 -2.39 -0.02 1.00 16 39 H 0.07 2.17 7.81 -2.39 -0.02 2.15 16 40 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 41 H 0.40 19.39 7.90 -92.71 -0.73 18.65 16 42 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 43 H 0.06 1.26 7.57 -2.39 -0.02 1.24 16 44 H 0.08 1.86 7.68 -2.39 -0.02 1.84 16 45 H 0.08 0.87 7.76 -2.39 -0.02 0.86 16 46 H 0.11 0.75 7.87 -2.39 -0.02 0.73 16 47 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 48 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 49 H 0.10 1.12 7.89 -2.39 -0.02 1.10 16 50 H 0.06 1.34 6.97 -2.39 -0.02 1.32 16 Total: -1.00 -74.49 398.38 -0.92 -75.41 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -0.51 Total: 36.21 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.06 Total: 10.32 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -8.40 Total: -115.66 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -0.09 Total: -51.23 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -74.49 -0.92 -75.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714649367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.509 kcal (2) G-P(sol) polarization free energy of solvation -74.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds