Wall clock time and date at job start Tue Mar 31 2020 19:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35924 * 117.00351 * 2 1 4 4 C 1.38847 * 120.40661 * 0.02562 * 3 2 1 5 5 N 1.31878 * 121.00408 * 180.27779 * 4 3 2 6 6 C 1.31686 * 121.93646 * 359.46837 * 5 4 3 7 7 C 1.39525 * 120.69089 * 0.52519 * 6 5 4 8 8 C 1.47858 * 120.52734 * 179.76159 * 7 6 5 9 9 O 1.21554 * 119.99792 * 184.35981 * 8 7 6 10 10 N 1.34776 * 120.00276 * 4.37050 * 8 7 6 11 11 C 1.46501 * 119.99870 * 185.13895 * 10 8 7 12 12 H 1.08996 * 109.47071 * 321.94658 * 11 10 8 13 13 C 1.52998 * 109.46937 * 201.93916 * 11 10 8 14 14 N 1.46500 * 109.46757 * 55.00704 * 13 11 10 15 15 C 1.36940 * 119.99684 * 179.97438 * 14 13 11 16 16 H 1.07994 * 120.00378 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99841 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00103 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00161 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47251 * 59.99874 * 19 17 15 21 21 H 1.48495 * 109.47403 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47231 * 300.00678 * 19 17 15 23 23 C 1.53000 * 109.46745 * 81.94706 * 11 10 8 24 24 C 1.53009 * 109.46903 * 183.39601 * 23 11 10 25 25 C 1.52999 * 109.47130 * 65.02095 * 24 23 11 26 26 C 1.53000 * 109.47032 * 185.02441 * 24 23 11 27 27 C 1.38844 * 120.40403 * 180.02562 * 3 2 1 28 28 C 1.50696 * 120.88275 * 0.02562 * 27 3 2 29 29 H 1.09005 * 109.46834 * 59.99946 * 1 2 3 30 30 H 1.08991 * 109.47232 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46743 * 300.00400 * 1 2 3 32 32 H 1.07998 * 119.49612 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.65282 * 180.25264 * 6 5 4 34 34 H 0.96998 * 119.99472 * 5.13554 * 10 8 7 35 35 H 1.08998 * 109.47284 * 174.99876 * 13 11 10 36 36 H 1.08996 * 109.47337 * 295.00602 * 13 11 10 37 37 H 0.97001 * 120.00363 * 359.97438 * 14 13 11 38 38 H 0.96994 * 120.00022 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47127 * 303.39063 * 23 11 10 40 40 H 1.08995 * 109.48034 * 63.39068 * 23 11 10 41 41 H 1.08995 * 109.46720 * 305.02311 * 24 23 11 42 42 H 1.08998 * 109.46742 * 184.02402 * 25 24 23 43 43 H 1.08998 * 109.47301 * 304.02731 * 25 24 23 44 44 H 1.08999 * 109.46955 * 64.02195 * 25 24 23 45 45 H 1.08997 * 109.47281 * 59.99840 * 26 24 23 46 46 H 1.08999 * 109.47294 * 179.97438 * 26 24 23 47 47 H 1.09006 * 109.46926 * 299.99859 * 26 24 23 48 48 H 1.09000 * 109.47349 * 97.01053 * 28 27 3 49 49 H 1.08997 * 109.47365 * 217.00795 * 28 27 3 50 50 H 1.08995 * 109.47221 * 337.00492 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2983 2.3809 0.0005 5 7 1.8848 3.5621 -0.0049 6 6 3.1955 3.6890 -0.0008 7 6 4.0200 2.5635 -0.0012 8 6 5.4913 2.7102 -0.0018 9 8 6.2001 1.7260 -0.0823 10 7 6.0464 3.9351 0.0870 11 6 7.4986 4.0911 -0.0267 12 1 7.9937 3.2592 0.4741 13 6 7.9231 5.4068 0.6289 14 7 7.4382 5.4423 2.0109 15 6 7.6998 6.5301 2.8005 16 1 8.2638 7.3617 2.4046 17 6 7.2399 6.5641 4.1099 18 7 6.5530 5.5504 4.5926 19 14 7.5973 8.0476 5.1872 20 1 7.0080 9.2622 4.5684 21 1 7.0023 7.8380 6.5315 22 1 9.0662 8.2220 5.3181 23 6 7.8957 4.1063 -1.5042 24 6 9.4193 4.1841 -1.6220 25 6 10.0408 2.9087 -1.0494 26 6 9.8103 4.3255 -3.0944 27 6 3.4321 1.2934 -0.0005 28 6 4.2810 0.0483 -0.0017 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2199 2.3226 0.0005 33 1 3.6368 4.6747 -0.0014 34 1 5.4843 4.7133 0.2262 35 1 9.0105 5.4812 0.6235 36 1 7.4987 6.2430 0.0734 37 1 6.9320 4.6953 2.3667 38 1 6.2314 5.5743 5.5074 39 1 7.5402 3.1952 -1.9853 40 1 7.4489 4.9727 -1.9917 41 1 9.7831 5.0473 -1.0649 42 1 11.1273 2.9941 -1.0677 43 1 9.7045 2.7702 -0.0219 44 1 9.7334 2.0531 -1.6506 45 1 9.3675 5.2341 -3.5023 46 1 10.8956 4.3813 -3.1784 47 1 9.4464 3.4621 -3.6515 48 1 4.5889 -0.1807 -1.0220 49 1 5.1640 0.2099 0.6166 50 1 3.7042 -0.7851 0.3994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715389362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:51 Heat of formation + Delta-G solvation = -38.971388 kcal Electronic energy + Delta-G solvation = -29688.703512 eV Core-core repulsion = 25716.392946 eV Total energy + Delta-G solvation = -3972.310566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.07272 -39.59072 -38.13619 -37.19133 -34.89931 -33.84532 -33.45063 -31.56502 -30.50914 -28.97605 -27.88988 -27.65098 -27.01717 -25.56639 -24.18400 -22.81977 -22.38993 -21.36799 -20.48034 -19.37210 -18.40067 -17.51394 -17.14695 -16.39742 -16.31518 -16.18390 -15.81352 -15.31880 -14.81524 -14.46641 -14.37384 -14.13050 -13.76267 -13.55553 -13.38472 -13.22623 -13.00261 -12.78745 -12.73967 -12.69212 -12.29319 -12.27547 -12.16011 -12.00434 -11.76890 -11.70999 -11.60941 -11.10650 -10.86653 -10.77531 -10.76058 -10.45338 -10.26773 -10.04923 -9.94096 -9.74240 -9.51982 -9.26071 -8.91310 -8.64386 -8.57833 -6.96744 -5.78233 -3.08375 0.57874 1.13944 2.83528 2.97585 3.42312 3.44872 3.47850 3.48767 3.79504 4.24300 4.39271 4.56688 4.65555 4.69766 4.82421 4.84331 4.98081 5.01687 5.08521 5.12113 5.16800 5.23785 5.41762 5.53238 5.54428 5.56027 5.72000 5.74702 5.77100 5.82698 5.84368 5.92720 6.00843 6.09312 6.11059 6.17935 6.19164 6.21334 6.34908 6.40836 6.48949 6.52454 6.59845 6.72706 6.92393 6.96144 7.67284 7.74232 7.79098 8.39083 8.42656 9.51149 10.06622 10.41777 11.43815 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007989 B = 0.003823 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3503.824041 B = 7322.212374 C = 9954.174666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.061 3.939 4 C 0.039 3.961 5 N -0.457 5.457 6 C 0.108 3.892 7 C -0.149 4.149 8 C 0.565 3.435 9 O -0.532 6.532 10 N -0.704 5.704 11 C 0.136 3.864 12 H 0.093 0.907 13 C 0.144 3.856 14 N -0.731 5.731 15 C -0.244 4.244 16 H 0.070 0.930 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.120 4.120 24 C -0.096 4.096 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.012 4.012 28 C -0.112 4.112 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.404 0.596 35 H 0.037 0.963 36 H 0.024 0.976 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.077 0.923 49 H 0.101 0.899 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 -9.372 -14.809 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.219 6.219 3 C 0.014 3.986 4 C -0.119 4.119 5 N -0.166 5.166 6 C -0.051 4.051 7 C -0.154 4.154 8 C 0.351 3.649 9 O -0.410 6.410 10 N -0.354 5.354 11 C 0.032 3.968 12 H 0.110 0.890 13 C 0.016 3.984 14 N -0.376 5.376 15 C -0.375 4.375 16 H 0.088 0.912 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.159 4.159 24 C -0.115 4.115 25 C -0.205 4.205 26 C -0.202 4.202 27 C -0.021 4.021 28 C -0.168 4.168 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.177 0.823 33 H 0.181 0.819 34 H 0.240 0.760 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.119 0.881 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.456 -9.372 -14.810 19.046 hybrid contribution -0.185 0.472 0.942 1.070 sum -7.640 -8.900 -13.868 18.163 Atomic orbital electron populations 1.23126 0.78124 1.04343 1.01559 1.86085 1.21396 1.25627 1.88775 1.19748 0.92367 0.85967 1.00560 1.23044 1.00596 0.87161 1.01066 1.67538 1.11977 1.25856 1.11207 1.22912 0.88649 0.98362 0.95222 1.20788 0.95148 0.93671 1.05817 1.17843 0.86507 0.83742 0.76817 1.90708 1.62992 1.37241 1.50075 1.45916 1.08903 1.08414 1.72180 1.21392 0.79371 1.00541 0.95504 0.88956 1.21021 0.97562 0.92656 0.87158 1.42356 1.65986 1.21782 1.07522 1.19153 1.29010 0.96251 0.93123 0.91194 1.24742 1.00698 0.97900 0.97300 1.69654 1.41486 1.30777 1.15884 0.86280 0.77758 0.82282 0.79904 1.21243 1.21722 1.21278 1.21967 0.95641 1.02127 0.96146 1.21131 0.94838 0.99222 0.96353 1.21879 0.99933 0.97089 1.01648 1.21824 1.00896 1.01355 0.96083 1.19826 0.90703 0.95950 0.95597 1.20908 0.99680 0.92448 1.03790 0.92463 0.87892 0.92334 0.82292 0.81930 0.75982 0.94493 0.95830 0.78017 0.93428 0.91663 0.91829 0.90357 0.93135 0.91929 0.92939 0.92890 0.92902 0.93029 0.90440 0.88085 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 101.05 0.99 1.14 16 2 O -0.31 -3.36 9.56 -19.50 -0.19 -3.55 16 3 C 0.06 0.78 6.68 -39.13 -0.26 0.52 16 4 C 0.04 0.47 10.21 -17.31 -0.18 0.29 16 5 N -0.46 -6.48 10.34 -12.80 -0.13 -6.61 16 6 C 0.11 1.54 10.69 -17.13 -0.18 1.36 16 7 C -0.15 -2.25 5.89 -104.84 -0.62 -2.87 16 8 C 0.56 9.29 7.65 -12.32 -0.09 9.19 16 9 O -0.53 -9.65 13.17 5.32 0.07 -9.58 16 10 N -0.70 -11.16 4.49 -54.75 -0.25 -11.41 16 11 C 0.14 2.21 2.06 -67.93 -0.14 2.07 16 12 H 0.09 1.69 5.79 -51.93 -0.30 1.39 16 13 C 0.14 2.71 5.40 -4.04 -0.02 2.68 16 14 N -0.73 -17.72 5.43 -59.91 -0.33 -18.05 16 15 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 18 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 19 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C -0.12 -1.61 4.42 -26.73 -0.12 -1.72 16 24 C -0.10 -1.19 2.76 -90.62 -0.25 -1.44 16 25 C -0.15 -1.89 9.04 37.16 0.34 -1.55 16 26 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16 27 C -0.01 -0.17 5.97 -103.76 -0.62 -0.79 16 28 C -0.11 -1.53 8.70 36.00 0.31 -1.22 16 29 H 0.06 0.30 7.68 -51.93 -0.40 -0.10 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 32 H 0.16 1.41 6.30 -52.49 -0.33 1.08 16 33 H 0.16 2.07 6.48 -52.49 -0.34 1.73 16 34 H 0.40 6.16 6.70 -40.82 -0.27 5.89 16 35 H 0.04 0.70 6.66 -51.93 -0.35 0.36 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.39 10.06 7.33 -40.82 -0.30 9.76 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.02 6.39 -51.93 -0.33 0.69 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.90 6.32 -51.93 -0.33 0.57 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.10 1.57 5.96 -51.93 -0.31 1.26 16 50 H 0.06 0.81 7.42 -51.93 -0.39 0.42 16 LS Contribution 399.14 15.07 6.02 6.02 Total: -1.00 -32.19 399.14 -7.66 -39.85 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -7.81 Total: 13.97 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -0.75 Total: -0.66 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 0.02 Total: -63.17 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.12 Total: -13.13 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.19 -7.66 -39.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715389362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.881 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds