Wall clock time and date at job start Tue Mar 31 2020 19:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35924 * 117.00351 * 2 1 4 4 C 1.38847 * 120.40661 * 0.02562 * 3 2 1 5 5 N 1.31878 * 121.00408 * 180.27779 * 4 3 2 6 6 C 1.31686 * 121.93646 * 359.46837 * 5 4 3 7 7 C 1.39525 * 120.69089 * 0.52519 * 6 5 4 8 8 C 1.47858 * 120.52734 * 179.76159 * 7 6 5 9 9 O 1.21554 * 119.99792 * 184.35981 * 8 7 6 10 10 N 1.34776 * 120.00276 * 4.37050 * 8 7 6 11 11 C 1.46501 * 119.99870 * 185.13895 * 10 8 7 12 12 H 1.08996 * 109.47071 * 321.94658 * 11 10 8 13 13 C 1.52998 * 109.46937 * 201.93916 * 11 10 8 14 14 N 1.46500 * 109.46757 * 55.00704 * 13 11 10 15 15 C 1.36940 * 119.99684 * 179.97438 * 14 13 11 16 16 H 1.07994 * 120.00378 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99841 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00103 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00161 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47251 * 59.99874 * 19 17 15 21 21 H 1.48495 * 109.47403 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47231 * 300.00678 * 19 17 15 23 23 C 1.53000 * 109.46745 * 81.94706 * 11 10 8 24 24 C 1.53009 * 109.46903 * 183.39601 * 23 11 10 25 25 C 1.52999 * 109.47130 * 65.02095 * 24 23 11 26 26 C 1.53000 * 109.47032 * 185.02441 * 24 23 11 27 27 C 1.38844 * 120.40403 * 180.02562 * 3 2 1 28 28 C 1.50696 * 120.88275 * 0.02562 * 27 3 2 29 29 H 1.09005 * 109.46834 * 59.99946 * 1 2 3 30 30 H 1.08991 * 109.47232 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46743 * 300.00400 * 1 2 3 32 32 H 1.07998 * 119.49612 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.65282 * 180.25264 * 6 5 4 34 34 H 0.96998 * 119.99472 * 5.13554 * 10 8 7 35 35 H 1.08998 * 109.47284 * 174.99876 * 13 11 10 36 36 H 1.08996 * 109.47337 * 295.00602 * 13 11 10 37 37 H 0.97001 * 120.00363 * 359.97438 * 14 13 11 38 38 H 0.96994 * 120.00022 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47127 * 303.39063 * 23 11 10 40 40 H 1.08995 * 109.48034 * 63.39068 * 23 11 10 41 41 H 1.08995 * 109.46720 * 305.02311 * 24 23 11 42 42 H 1.08998 * 109.46742 * 184.02402 * 25 24 23 43 43 H 1.08998 * 109.47301 * 304.02731 * 25 24 23 44 44 H 1.08999 * 109.46955 * 64.02195 * 25 24 23 45 45 H 1.08997 * 109.47281 * 59.99840 * 26 24 23 46 46 H 1.08999 * 109.47294 * 179.97438 * 26 24 23 47 47 H 1.09006 * 109.46926 * 299.99859 * 26 24 23 48 48 H 1.09000 * 109.47349 * 97.01053 * 28 27 3 49 49 H 1.08997 * 109.47365 * 217.00795 * 28 27 3 50 50 H 1.08995 * 109.47221 * 337.00492 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2983 2.3809 0.0005 5 7 1.8848 3.5621 -0.0049 6 6 3.1955 3.6890 -0.0008 7 6 4.0200 2.5635 -0.0012 8 6 5.4913 2.7102 -0.0018 9 8 6.2001 1.7260 -0.0823 10 7 6.0464 3.9351 0.0870 11 6 7.4986 4.0911 -0.0267 12 1 7.9937 3.2592 0.4741 13 6 7.9231 5.4068 0.6289 14 7 7.4382 5.4423 2.0109 15 6 7.6998 6.5301 2.8005 16 1 8.2638 7.3617 2.4046 17 6 7.2399 6.5641 4.1099 18 7 6.5530 5.5504 4.5926 19 14 7.5973 8.0476 5.1872 20 1 7.0080 9.2622 4.5684 21 1 7.0023 7.8380 6.5315 22 1 9.0662 8.2220 5.3181 23 6 7.8957 4.1063 -1.5042 24 6 9.4193 4.1841 -1.6220 25 6 10.0408 2.9087 -1.0494 26 6 9.8103 4.3255 -3.0944 27 6 3.4321 1.2934 -0.0005 28 6 4.2810 0.0483 -0.0017 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2199 2.3226 0.0005 33 1 3.6368 4.6747 -0.0014 34 1 5.4843 4.7133 0.2262 35 1 9.0105 5.4812 0.6235 36 1 7.4987 6.2430 0.0734 37 1 6.9320 4.6953 2.3667 38 1 6.2314 5.5743 5.5074 39 1 7.5402 3.1952 -1.9853 40 1 7.4489 4.9727 -1.9917 41 1 9.7831 5.0473 -1.0649 42 1 11.1273 2.9941 -1.0677 43 1 9.7045 2.7702 -0.0219 44 1 9.7334 2.0531 -1.6506 45 1 9.3675 5.2341 -3.5023 46 1 10.8956 4.3813 -3.1784 47 1 9.4464 3.4621 -3.6515 48 1 4.5889 -0.1807 -1.0220 49 1 5.1640 0.2099 0.6166 50 1 3.7042 -0.7851 0.3994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715389362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:50 Heat of formation + Delta-G solvation = -60.051909 kcal Electronic energy + Delta-G solvation = -29689.617632 eV Core-core repulsion = 25716.392946 eV Total energy + Delta-G solvation = -3973.224686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.12710 -40.77179 -39.10267 -38.43084 -36.34283 -35.31846 -34.66396 -33.16836 -31.89955 -30.27446 -28.80103 -28.46456 -27.98648 -27.20807 -25.32150 -24.46437 -23.58005 -22.59825 -21.68736 -20.53918 -19.55673 -19.00736 -18.53074 -17.53162 -17.38162 -17.10796 -16.95981 -16.76832 -16.17001 -15.89673 -15.38792 -15.25878 -15.13047 -15.04138 -14.66290 -14.41867 -14.20645 -14.05460 -13.87307 -13.79169 -13.65021 -13.42447 -13.12306 -13.10025 -12.92009 -12.74202 -12.69617 -12.62142 -12.36336 -12.25518 -12.02300 -11.87959 -11.75449 -11.52566 -11.33465 -11.12825 -10.91520 -10.65612 -10.42506 -9.94504 -9.52915 -8.98914 -7.92478 -5.21924 -0.50368 0.08545 1.49135 1.51452 1.57483 1.75975 1.91029 2.33588 2.57588 2.68633 3.26181 3.41758 3.42063 3.62047 3.64488 3.75457 3.87266 4.03923 4.08422 4.12591 4.20931 4.21678 4.36497 4.40626 4.43332 4.53898 4.60833 4.64475 4.72983 4.76909 4.77954 4.83786 4.91684 4.95994 5.01750 5.04848 5.07119 5.13225 5.15362 5.18848 5.36693 5.40584 5.50803 5.52012 5.54743 5.60645 6.13424 6.27623 6.48270 6.71708 7.13795 7.35336 8.08948 8.32438 9.30228 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007989 B = 0.003823 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3503.824041 B = 7322.212374 C = 9954.174666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.317 6.317 3 C 0.068 3.932 4 C 0.044 3.956 5 N -0.471 5.471 6 C 0.101 3.899 7 C -0.163 4.163 8 C 0.563 3.437 9 O -0.555 6.555 10 N -0.702 5.702 11 C 0.146 3.854 12 H 0.068 0.932 13 C 0.147 3.853 14 N -0.743 5.743 15 C -0.243 4.243 16 H 0.079 0.921 17 C -0.072 4.072 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.275 1.275 21 H -0.300 1.300 22 H -0.280 1.280 23 C -0.108 4.108 24 C -0.096 4.096 25 C -0.146 4.146 26 C -0.139 4.139 27 C -0.032 4.032 28 C -0.103 4.103 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.068 0.932 32 H 0.196 0.804 33 H 0.171 0.829 34 H 0.407 0.593 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.373 0.627 38 H 0.249 0.751 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.488 -8.753 -16.239 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.230 6.230 3 C 0.020 3.980 4 C -0.113 4.113 5 N -0.180 5.180 6 C -0.058 4.058 7 C -0.168 4.168 8 C 0.350 3.650 9 O -0.435 6.435 10 N -0.352 5.352 11 C 0.041 3.959 12 H 0.086 0.914 13 C 0.020 3.980 14 N -0.386 5.386 15 C -0.375 4.375 16 H 0.097 0.903 17 C -0.264 4.264 18 N -0.619 5.619 19 Si 0.800 3.200 20 H -0.201 1.201 21 H -0.226 1.226 22 H -0.206 1.206 23 C -0.147 4.147 24 C -0.115 4.115 25 C -0.204 4.204 26 C -0.196 4.196 27 C -0.041 4.041 28 C -0.159 4.159 29 H 0.092 0.908 30 H 0.143 0.857 31 H 0.087 0.913 32 H 0.212 0.788 33 H 0.188 0.812 34 H 0.244 0.756 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.205 0.795 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.337 -8.729 -16.288 20.273 hybrid contribution 0.022 0.185 1.332 1.345 sum -8.315 -8.545 -14.956 19.127 Atomic orbital electron populations 1.23516 0.75588 1.06379 1.02825 1.86087 1.23960 1.24620 1.88291 1.19732 0.91793 0.86999 0.99513 1.23596 1.02166 0.86291 0.99270 1.67593 1.11722 1.26927 1.11746 1.23019 0.88917 0.98455 0.95427 1.20694 0.94178 0.94516 1.07429 1.18102 0.87237 0.83407 0.76245 1.90693 1.63719 1.37863 1.51255 1.45891 1.08753 1.08523 1.72054 1.21231 0.79488 0.98148 0.97003 0.91387 1.21149 0.97628 0.94415 0.84793 1.42529 1.65959 1.20700 1.09387 1.19586 1.27583 0.96856 0.93443 0.90262 1.25522 1.01462 1.00595 0.98857 1.69825 1.43410 1.32883 1.15746 0.85252 0.77654 0.79428 0.77648 1.20135 1.22626 1.20598 1.21875 0.96629 1.02461 0.93720 1.21135 0.93784 0.98624 0.97912 1.21857 1.00798 0.97525 1.00192 1.21775 1.01692 1.01939 0.94235 1.20012 0.91955 0.95762 0.96396 1.20776 0.98824 0.92817 1.03488 0.90824 0.85665 0.91325 0.78786 0.81202 0.75638 0.94025 0.94376 0.79474 0.94225 0.92196 0.90379 0.90843 0.91810 0.94339 0.92821 0.92006 0.91846 0.92732 0.90186 0.90482 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.82 113.37 1.11 1.22 16 2 O -0.32 -6.35 9.56 -92.69 -0.89 -7.24 16 3 C 0.07 1.64 6.68 22.56 0.15 1.79 16 4 C 0.04 0.99 10.21 84.83 0.87 1.86 16 5 N -0.47 -12.88 10.34 -194.40 -2.01 -14.89 16 6 C 0.10 2.88 10.69 85.03 0.91 3.78 16 7 C -0.16 -5.03 5.89 -20.01 -0.12 -5.15 16 8 C 0.56 19.22 7.65 86.79 0.66 19.89 16 9 O -0.56 -21.14 13.17 -3.89 -0.05 -21.19 16 10 N -0.70 -22.85 4.49 -445.40 -2.00 -24.85 16 11 C 0.15 4.80 2.06 44.99 0.09 4.89 16 12 H 0.07 2.61 5.79 -2.39 -0.01 2.59 16 13 C 0.15 5.48 5.40 86.38 0.47 5.95 16 14 N -0.74 -36.38 5.43 -343.46 -1.87 -38.24 16 15 C -0.24 -13.16 9.99 84.03 0.84 -12.32 16 16 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 17 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 18 N -0.97 -59.14 13.06 21.65 0.28 -58.86 16 19 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 C -0.11 -2.83 4.42 30.60 0.14 -2.69 16 24 C -0.10 -2.26 2.76 -10.79 -0.03 -2.29 16 25 C -0.15 -3.70 9.04 71.98 0.65 -3.05 16 26 C -0.14 -2.61 9.19 71.98 0.66 -1.95 16 27 C -0.03 -0.93 5.97 -19.31 -0.12 -1.05 16 28 C -0.10 -2.88 8.70 71.23 0.62 -2.26 16 29 H 0.07 0.52 7.68 -2.38 -0.02 0.50 16 30 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.58 7.67 -2.39 -0.02 0.56 16 32 H 0.20 2.80 6.30 -2.91 -0.02 2.78 16 33 H 0.17 4.38 6.48 -2.91 -0.02 4.37 16 34 H 0.41 12.66 6.70 -92.71 -0.62 12.04 16 35 H 0.04 1.55 6.66 -2.39 -0.02 1.54 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.37 20.04 7.33 -92.71 -0.68 19.36 16 38 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 40 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.07 1.82 6.39 -2.39 -0.02 1.80 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.04 1.14 6.32 -2.39 -0.02 1.13 16 44 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 48 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.08 2.54 5.96 -2.39 -0.01 2.52 16 50 H 0.08 1.91 7.42 -2.39 -0.02 1.89 16 Total: -1.00 -69.82 399.14 2.54 -67.28 By element: Atomic # 1 Polarization: 45.58 SS G_CDS: -0.33 Total: 45.25 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 7.37 Total: 5.03 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -5.59 Total: -136.85 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.94 Total: -28.43 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -69.82 2.54 -67.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715389362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.230 kcal (2) G-P(sol) polarization free energy of solvation -69.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds