Wall clock time and date at job start Tue Mar 31 2020 19:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 110.28705 * 2 1 4 4 C 1.34779 * 120.00099 * 299.32369 * 3 2 1 5 5 O 1.21281 * 119.99865 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00164 * 180.02562 * 4 3 2 7 7 H 1.09001 * 115.55686 * 325.73396 * 6 4 3 8 8 C 1.53120 * 117.51182 * 111.53759 * 6 4 3 9 9 C 1.52465 * 117.51069 * 180.02562 * 6 4 3 10 10 C 1.53247 * 128.58417 * 134.95298 * 9 6 4 11 11 C 1.53888 * 86.88415 * 194.88444 * 10 9 6 12 12 C 1.53257 * 128.58715 * 10.14891 * 9 6 4 13 13 C 1.54253 * 110.32540 * 237.86786 * 2 1 3 14 14 C 1.54372 * 105.06284 * 241.00350 * 13 2 1 15 15 N 1.48560 * 104.59615 * 336.14677 * 14 13 2 16 16 C 1.46895 * 111.00118 * 159.03757 * 15 14 13 17 17 C 1.50700 * 109.47048 * 69.87587 * 16 15 14 18 18 O 1.21292 * 119.99931 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99961 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99504 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00446 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99362 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99820 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00230 * 359.71778 * 22 20 19 25 25 H 1.48501 * 109.46922 * 90.00204 * 24 22 20 26 26 H 1.48496 * 109.47354 * 210.00401 * 24 22 20 27 27 H 1.48501 * 109.47428 * 330.00509 * 24 22 20 28 28 C 1.48561 * 104.21729 * 39.48264 * 15 14 13 29 29 H 1.08996 * 109.47184 * 180.67347 * 1 2 3 30 30 H 1.09004 * 109.47079 * 300.68054 * 1 2 3 31 31 H 1.09006 * 109.46952 * 60.67575 * 1 2 3 32 32 H 0.97001 * 120.00198 * 119.32390 * 3 2 1 33 33 H 1.09006 * 117.51040 * 214.89220 * 8 6 4 34 34 H 1.08998 * 117.51790 * 359.97438 * 8 6 4 35 35 H 1.08998 * 113.64816 * 309.38630 * 10 9 6 36 36 H 1.09006 * 113.65023 * 80.38475 * 10 9 6 37 37 H 1.09006 * 113.58444 * 270.39306 * 11 10 9 38 38 H 1.09002 * 113.58813 * 139.57203 * 11 10 9 39 39 H 1.09001 * 113.64383 * 279.61262 * 12 9 6 40 40 H 1.08990 * 113.64418 * 50.61584 * 12 9 6 41 41 H 1.09000 * 110.32347 * 122.10644 * 13 2 1 42 42 H 1.09005 * 110.41151 * 359.94651 * 13 2 1 43 43 H 1.09000 * 110.41150 * 217.36660 * 14 13 2 44 44 H 1.08997 * 110.41363 * 94.92799 * 14 13 2 45 45 H 1.09004 * 109.47549 * 309.87603 * 16 15 14 46 46 H 1.09005 * 109.47114 * 189.87679 * 16 15 14 47 47 H 0.96999 * 120.00044 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00377 * 179.97438 * 23 22 20 49 49 H 1.09005 * 110.41231 * 79.30047 * 28 15 14 50 50 H 1.09000 * 110.40710 * 201.73519 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3741 0.0000 4 6 1.7355 2.2044 -1.0176 5 8 1.0423 1.8141 -1.9332 6 6 2.2584 3.6178 -1.0180 7 1 2.3424 4.0883 -0.0383 8 6 3.3075 3.9835 -2.0716 9 6 1.8809 4.5081 -2.1966 10 6 1.3917 5.9603 -2.1792 11 6 0.9530 5.7417 -3.6380 12 6 0.8582 4.2419 -3.3066 13 6 2.0658 -0.7693 -1.2249 14 6 2.8828 -1.9400 -0.6375 15 7 3.2721 -1.4806 0.7206 16 6 3.6118 -2.6192 1.5843 17 6 4.9066 -3.2339 1.1189 18 8 5.4893 -2.7690 0.1621 19 7 5.4177 -4.2998 1.7665 20 6 6.5959 -4.8587 1.3433 21 1 7.1143 -4.4452 0.4908 22 6 7.1225 -5.9579 2.0106 23 7 8.2521 -6.4934 1.6053 24 14 6.2292 -6.6691 3.4889 25 1 5.2760 -7.7138 3.0358 26 1 7.2161 -7.2704 4.4215 27 1 5.4852 -5.5886 4.1848 28 6 2.0683 -0.7706 1.2246 29 1 -0.3633 -1.0275 0.0121 30 1 -0.3633 0.5244 0.8838 31 1 -0.3633 0.5033 -0.8960 32 1 2.5920 1.6864 0.7324 33 1 4.0822 4.6949 -1.7851 34 1 3.6196 3.2018 -2.7641 35 1 0.5617 6.1339 -1.4944 36 1 2.1934 6.6905 -2.0685 37 1 1.7280 5.9793 -4.3668 38 1 -0.0080 6.1971 -3.8774 39 1 1.2324 3.5945 -4.0996 40 1 -0.1202 3.9372 -2.9356 41 1 2.7068 -0.1246 -1.8263 42 1 1.2399 -1.1485 -1.8268 43 1 3.7689 -2.1273 -1.2440 44 1 2.2683 -2.8380 -0.5734 45 1 2.8172 -3.3636 1.5336 46 1 3.7220 -2.2750 2.6127 47 1 4.9523 -4.6710 2.5323 48 1 8.6199 -7.2605 2.0713 49 1 1.3263 -1.4856 1.5802 50 1 2.3412 -0.0773 2.0202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716849267.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:15 Heat of formation + Delta-G solvation = -5.854707 kcal Electronic energy + Delta-G solvation = -29224.448635 eV Core-core repulsion = 25253.574116 eV Total energy + Delta-G solvation = -3970.874519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.78960 -39.66173 -38.50284 -37.49619 -34.62040 -33.92321 -33.81969 -31.75158 -31.42817 -29.57724 -27.75979 -25.92284 -25.56549 -24.49649 -23.60165 -23.30995 -21.44720 -20.65348 -19.59384 -19.25518 -18.60356 -18.22638 -17.24299 -16.53394 -16.01842 -15.51480 -15.46406 -15.38039 -14.88327 -14.80161 -14.63943 -14.31204 -14.07199 -13.41677 -13.22525 -13.06211 -12.93372 -12.69376 -12.56129 -12.46048 -12.32357 -12.19514 -12.01632 -11.92043 -11.78240 -11.69743 -11.55001 -11.21771 -11.02262 -11.01013 -10.68672 -10.59481 -10.56694 -10.31668 -10.01928 -9.97695 -9.59020 -9.55586 -9.09617 -8.63008 -8.19468 -8.11380 -6.30888 -3.82237 2.44194 2.98635 3.01854 3.05916 3.14377 3.54072 3.73981 3.95199 4.10093 4.12384 4.33893 4.35833 4.52320 4.53520 4.63232 4.69483 4.85369 4.90199 5.00721 5.10930 5.20926 5.29547 5.31116 5.33701 5.42515 5.45803 5.46255 5.54606 5.54989 5.60724 5.62018 5.64145 5.71445 5.72800 5.75931 5.91188 5.92062 5.96895 6.05646 6.11570 6.15764 6.23908 6.42266 6.55322 7.00818 7.06247 7.49867 7.58477 8.14549 8.22284 8.60502 8.95618 9.42625 9.83899 10.82287 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025624 B = 0.002129 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.444435 B =13150.423393 C =13655.487280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.175 3.825 3 N -0.710 5.710 4 C 0.546 3.454 5 O -0.533 6.533 6 C -0.180 4.180 7 H 0.120 0.880 8 C -0.120 4.120 9 C -0.127 4.127 10 C -0.099 4.099 11 C -0.143 4.143 12 C -0.081 4.081 13 C -0.117 4.117 14 C 0.035 3.965 15 N -0.483 5.483 16 C 0.031 3.969 17 C 0.454 3.546 18 O -0.558 6.558 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.028 3.972 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.401 0.599 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.039 0.961 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.057 0.943 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.131 21.031 -1.554 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.088 3.912 3 N -0.362 5.362 4 C 0.332 3.668 5 O -0.410 6.410 6 C -0.201 4.201 7 H 0.138 0.862 8 C -0.157 4.157 9 C -0.127 4.127 10 C -0.137 4.137 11 C -0.180 4.180 12 C -0.118 4.118 13 C -0.156 4.156 14 C -0.093 4.093 15 N -0.206 5.206 16 C -0.101 4.101 17 C 0.239 3.761 18 O -0.439 6.439 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.101 4.101 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.236 0.764 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.575 21.215 -2.841 27.696 hybrid contribution -0.823 -1.279 1.994 2.508 sum -18.398 19.936 -0.848 27.142 Atomic orbital electron populations 1.22190 0.93717 1.02348 1.03225 1.20970 0.93412 0.81217 0.95571 1.46059 1.53388 1.11861 1.24857 1.19547 0.79792 0.85699 0.81720 1.90655 1.37917 1.76918 1.35501 1.22163 1.06989 0.94242 0.96722 0.86203 1.22807 0.90883 1.02526 0.99513 1.22289 0.97642 0.95471 0.97345 1.22505 1.00497 0.93300 0.97360 1.22820 1.01466 0.97414 0.96341 1.22304 0.98147 0.95325 0.96050 1.22663 0.99479 0.96867 0.96611 1.23234 0.99757 0.95355 0.90919 1.65170 1.30763 1.22673 1.02021 1.22105 0.97161 0.92793 0.98039 1.19581 0.87392 0.82753 0.86326 1.90553 1.61949 1.62649 1.28772 1.42204 1.23164 1.28585 1.29259 1.19421 0.97522 1.11051 1.15211 0.86295 1.25040 0.96205 0.96796 0.98199 1.69621 1.18541 1.23246 1.40791 0.86673 0.80004 0.79796 0.82904 1.19691 1.20187 1.19518 1.23435 0.92454 0.97830 0.96365 0.91821 0.92707 0.90225 0.76381 0.87641 0.87894 0.89734 0.91296 0.90153 0.91347 0.91238 0.89531 0.90597 0.90808 0.88078 0.94266 0.93045 0.89164 0.79779 0.91639 0.92461 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.17 37.16 0.30 -1.32 16 2 C 0.17 2.00 1.01 -130.44 -0.13 1.87 16 3 N -0.71 -7.52 5.10 -46.33 -0.24 -7.75 16 4 C 0.55 6.27 6.78 -10.99 -0.07 6.20 16 5 O -0.53 -7.50 12.43 5.56 0.07 -7.43 16 6 C -0.18 -1.64 6.19 -91.98 -0.57 -2.21 16 7 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 8 C -0.12 -1.05 10.24 -26.92 -0.28 -1.32 16 9 C -0.13 -1.12 2.88 -154.77 -0.45 -1.57 16 10 C -0.10 -0.69 8.10 -26.14 -0.21 -0.91 16 11 C -0.14 -1.02 8.08 -25.81 -0.21 -1.23 16 12 C -0.08 -0.76 6.47 -26.14 -0.17 -0.93 16 13 C -0.12 -1.61 5.48 -25.36 -0.14 -1.75 16 14 C 0.04 0.56 5.80 -2.19 -0.01 0.54 16 15 N -0.48 -7.53 5.06 -231.42 -1.17 -8.71 16 16 C 0.03 0.51 5.30 -4.98 -0.03 0.48 16 17 C 0.45 10.26 7.58 -10.98 -0.08 10.17 16 18 O -0.56 -14.88 14.42 5.55 0.08 -14.80 16 19 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 20 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 24 Si 0.88 19.31 27.73 -169.99 -4.71 14.60 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.27 -5.38 6.53 56.52 0.37 -5.01 16 28 C 0.03 0.32 5.69 -2.18 -0.01 0.31 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.96 6.31 -51.93 -0.33 0.63 16 32 H 0.40 3.56 8.27 -40.82 -0.34 3.23 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 41 H 0.08 1.17 7.31 -51.93 -0.38 0.79 16 42 H 0.07 0.97 7.72 -51.93 -0.40 0.56 16 43 H 0.10 1.95 6.91 -51.93 -0.36 1.59 16 44 H 0.04 0.59 7.82 -51.93 -0.41 0.18 16 45 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 46 H 0.09 1.29 8.13 -51.93 -0.42 0.86 16 47 H 0.37 7.68 5.77 -40.82 -0.24 7.45 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.06 0.59 7.71 -51.93 -0.40 0.19 16 50 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 LS Contribution 394.66 15.07 5.95 5.95 Total: -1.00 -33.49 394.66 -9.89 -43.38 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -8.28 Total: 13.26 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.30 Total: 0.63 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.69 Total: -55.58 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.15 Total: -22.23 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.49 -9.89 -43.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716849267.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.527 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds