Wall clock time and date at job start Tue Mar 31 2020 19:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 110.28705 * 2 1 4 4 C 1.34779 * 120.00099 * 299.32369 * 3 2 1 5 5 O 1.21281 * 119.99865 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00164 * 180.02562 * 4 3 2 7 7 H 1.09001 * 115.55686 * 325.73396 * 6 4 3 8 8 C 1.53120 * 117.51182 * 111.53759 * 6 4 3 9 9 C 1.52465 * 117.51069 * 180.02562 * 6 4 3 10 10 C 1.53247 * 128.58417 * 134.95298 * 9 6 4 11 11 C 1.53888 * 86.88415 * 194.88444 * 10 9 6 12 12 C 1.53257 * 128.58715 * 10.14891 * 9 6 4 13 13 C 1.54253 * 110.32540 * 237.86786 * 2 1 3 14 14 C 1.54372 * 105.06284 * 241.00350 * 13 2 1 15 15 N 1.48560 * 104.59615 * 336.14677 * 14 13 2 16 16 C 1.46895 * 111.00118 * 159.03757 * 15 14 13 17 17 C 1.50700 * 109.47048 * 69.87587 * 16 15 14 18 18 O 1.21292 * 119.99931 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99961 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99504 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00446 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99362 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99820 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00230 * 359.71778 * 22 20 19 25 25 H 1.48501 * 109.46922 * 90.00204 * 24 22 20 26 26 H 1.48496 * 109.47354 * 210.00401 * 24 22 20 27 27 H 1.48501 * 109.47428 * 330.00509 * 24 22 20 28 28 C 1.48561 * 104.21729 * 39.48264 * 15 14 13 29 29 H 1.08996 * 109.47184 * 180.67347 * 1 2 3 30 30 H 1.09004 * 109.47079 * 300.68054 * 1 2 3 31 31 H 1.09006 * 109.46952 * 60.67575 * 1 2 3 32 32 H 0.97001 * 120.00198 * 119.32390 * 3 2 1 33 33 H 1.09006 * 117.51040 * 214.89220 * 8 6 4 34 34 H 1.08998 * 117.51790 * 359.97438 * 8 6 4 35 35 H 1.08998 * 113.64816 * 309.38630 * 10 9 6 36 36 H 1.09006 * 113.65023 * 80.38475 * 10 9 6 37 37 H 1.09006 * 113.58444 * 270.39306 * 11 10 9 38 38 H 1.09002 * 113.58813 * 139.57203 * 11 10 9 39 39 H 1.09001 * 113.64383 * 279.61262 * 12 9 6 40 40 H 1.08990 * 113.64418 * 50.61584 * 12 9 6 41 41 H 1.09000 * 110.32347 * 122.10644 * 13 2 1 42 42 H 1.09005 * 110.41151 * 359.94651 * 13 2 1 43 43 H 1.09000 * 110.41150 * 217.36660 * 14 13 2 44 44 H 1.08997 * 110.41363 * 94.92799 * 14 13 2 45 45 H 1.09004 * 109.47549 * 309.87603 * 16 15 14 46 46 H 1.09005 * 109.47114 * 189.87679 * 16 15 14 47 47 H 0.96999 * 120.00044 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00377 * 179.97438 * 23 22 20 49 49 H 1.09005 * 110.41231 * 79.30047 * 28 15 14 50 50 H 1.09000 * 110.40710 * 201.73519 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3741 0.0000 4 6 1.7355 2.2044 -1.0176 5 8 1.0423 1.8141 -1.9332 6 6 2.2584 3.6178 -1.0180 7 1 2.3424 4.0883 -0.0383 8 6 3.3075 3.9835 -2.0716 9 6 1.8809 4.5081 -2.1966 10 6 1.3917 5.9603 -2.1792 11 6 0.9530 5.7417 -3.6380 12 6 0.8582 4.2419 -3.3066 13 6 2.0658 -0.7693 -1.2249 14 6 2.8828 -1.9400 -0.6375 15 7 3.2721 -1.4806 0.7206 16 6 3.6118 -2.6192 1.5843 17 6 4.9066 -3.2339 1.1189 18 8 5.4893 -2.7690 0.1621 19 7 5.4177 -4.2998 1.7665 20 6 6.5959 -4.8587 1.3433 21 1 7.1143 -4.4452 0.4908 22 6 7.1225 -5.9579 2.0106 23 7 8.2521 -6.4934 1.6053 24 14 6.2292 -6.6691 3.4889 25 1 5.2760 -7.7138 3.0358 26 1 7.2161 -7.2704 4.4215 27 1 5.4852 -5.5886 4.1848 28 6 2.0683 -0.7706 1.2246 29 1 -0.3633 -1.0275 0.0121 30 1 -0.3633 0.5244 0.8838 31 1 -0.3633 0.5033 -0.8960 32 1 2.5920 1.6864 0.7324 33 1 4.0822 4.6949 -1.7851 34 1 3.6196 3.2018 -2.7641 35 1 0.5617 6.1339 -1.4944 36 1 2.1934 6.6905 -2.0685 37 1 1.7280 5.9793 -4.3668 38 1 -0.0080 6.1971 -3.8774 39 1 1.2324 3.5945 -4.0996 40 1 -0.1202 3.9372 -2.9356 41 1 2.7068 -0.1246 -1.8263 42 1 1.2399 -1.1485 -1.8268 43 1 3.7689 -2.1273 -1.2440 44 1 2.2683 -2.8380 -0.5734 45 1 2.8172 -3.3636 1.5336 46 1 3.7220 -2.2750 2.6127 47 1 4.9523 -4.6710 2.5323 48 1 8.6199 -7.2605 2.0713 49 1 1.3263 -1.4856 1.5802 50 1 2.3412 -0.0773 2.0202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716849267.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:14 Heat of formation + Delta-G solvation = -31.050643 kcal Electronic energy + Delta-G solvation = -29225.541213 eV Core-core repulsion = 25253.574116 eV Total energy + Delta-G solvation = -3971.967096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.68389 -40.71535 -39.90890 -38.66746 -36.09934 -35.44102 -34.62877 -33.75548 -32.54893 -30.64553 -29.07556 -26.93071 -26.56418 -25.68942 -24.84143 -23.93413 -22.68609 -21.50822 -21.24859 -20.52135 -20.06486 -19.28051 -18.09687 -17.71479 -17.47602 -16.90916 -16.36964 -16.30046 -16.10226 -15.96848 -15.80540 -15.37447 -15.32072 -15.04785 -14.60986 -14.44772 -14.11654 -13.88400 -13.68526 -13.46426 -13.27670 -13.16364 -13.06114 -12.98038 -12.90688 -12.71912 -12.42923 -12.41072 -12.31912 -12.20322 -11.99648 -11.94500 -11.83126 -11.47960 -11.23261 -10.99080 -10.73536 -10.48492 -10.38184 -10.23999 -10.00378 -9.39284 -8.40755 -6.01661 1.30221 1.35985 1.45028 1.58307 1.97410 2.16547 2.23570 2.63615 2.82507 3.15086 3.22054 3.37244 3.49573 3.68028 3.74011 3.83550 3.91077 3.97997 3.99855 4.11473 4.15293 4.23107 4.38346 4.40879 4.48078 4.51457 4.63556 4.65021 4.67187 4.77625 4.80935 4.81378 4.86292 4.87299 4.90935 5.02279 5.09825 5.10678 5.13645 5.17969 5.29299 5.41149 5.52265 5.52948 5.63475 5.83833 5.89036 6.00955 6.60483 6.67223 6.89460 7.36747 7.40769 7.99060 8.77043 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025624 B = 0.002129 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.444435 B =13150.423393 C =13655.487280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.177 3.823 3 N -0.705 5.705 4 C 0.539 3.461 5 O -0.565 6.565 6 C -0.181 4.181 7 H 0.147 0.853 8 C -0.122 4.122 9 C -0.134 4.134 10 C -0.088 4.088 11 C -0.136 4.136 12 C -0.091 4.091 13 C -0.110 4.110 14 C 0.039 3.961 15 N -0.507 5.507 16 C 0.043 3.957 17 C 0.451 3.549 18 O -0.609 6.609 19 N -0.592 5.592 20 C -0.326 4.326 21 H 0.052 0.948 22 C -0.018 4.018 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.258 1.258 26 H -0.276 1.276 27 H -0.228 1.228 28 C 0.035 3.965 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.412 0.588 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.084 0.916 46 H 0.127 0.873 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.083 0.917 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.149 22.283 2.271 30.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.091 3.909 3 N -0.357 5.357 4 C 0.327 3.673 5 O -0.444 6.444 6 C -0.202 4.202 7 H 0.164 0.836 8 C -0.159 4.159 9 C -0.135 4.135 10 C -0.125 4.125 11 C -0.173 4.173 12 C -0.129 4.129 13 C -0.149 4.149 14 C -0.089 4.089 15 N -0.231 5.231 16 C -0.088 4.088 17 C 0.238 3.762 18 O -0.493 6.493 19 N -0.234 5.234 20 C -0.456 4.456 21 H 0.071 0.929 22 C -0.216 4.216 23 N -0.577 5.577 24 Si 0.786 3.214 25 H -0.182 1.182 26 H -0.201 1.201 27 H -0.152 1.152 28 C -0.093 4.093 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.248 0.752 33 H 0.146 0.854 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.145 0.855 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.611 22.499 1.005 30.529 hybrid contribution 0.185 -1.640 0.614 1.761 sum -20.426 20.859 1.619 29.239 Atomic orbital electron populations 1.22105 0.92365 1.03110 1.03049 1.20950 0.94284 0.81365 0.94349 1.46034 1.53236 1.11436 1.24985 1.20018 0.79311 0.86714 0.81302 1.90646 1.39414 1.77710 1.36645 1.22245 1.06906 0.92936 0.98076 0.83560 1.22834 0.91550 1.02443 0.99097 1.22448 0.97274 0.96807 0.96922 1.22494 1.01052 0.91976 0.96976 1.22807 1.02252 0.95265 0.96991 1.22298 0.97786 0.96734 0.96033 1.22548 0.98733 0.96086 0.97513 1.23046 0.98022 0.96652 0.91223 1.65075 1.33628 1.22667 1.01721 1.22047 0.93750 0.93669 0.99356 1.20921 0.88832 0.81548 0.84858 1.90547 1.63928 1.63850 1.30942 1.42019 1.22037 1.29158 1.30232 1.18975 0.99625 1.12449 1.14529 0.92943 1.26154 0.96933 0.96426 1.02123 1.69813 1.20863 1.24059 1.42967 0.85342 0.78813 0.79843 0.77364 1.18231 1.20113 1.15155 1.23531 0.91203 0.98139 0.96404 0.90651 0.90841 0.92339 0.75166 0.85403 0.90123 0.88853 0.89779 0.89757 0.90251 0.93488 0.90747 0.93373 0.90537 0.92933 0.93193 0.89823 0.85519 0.77471 0.91199 0.89870 0.87283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.17 71.98 0.59 -2.10 16 2 C 0.18 3.71 1.01 4.50 0.00 3.72 16 3 N -0.71 -13.84 5.10 -418.89 -2.13 -15.98 16 4 C 0.54 12.18 6.78 87.66 0.59 12.78 16 5 O -0.57 -16.37 12.43 -3.03 -0.04 -16.41 16 6 C -0.18 -3.08 6.19 -11.68 -0.07 -3.15 16 7 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 8 C -0.12 -2.08 10.24 30.47 0.31 -1.77 16 9 C -0.13 -2.26 2.88 -52.35 -0.15 -2.41 16 10 C -0.09 -1.04 8.10 30.98 0.25 -0.79 16 11 C -0.14 -1.80 8.08 31.19 0.25 -1.55 16 12 C -0.09 -1.77 6.47 30.98 0.20 -1.56 16 13 C -0.11 -3.05 5.48 31.48 0.17 -2.88 16 14 C 0.04 1.24 5.80 86.45 0.50 1.74 16 15 N -0.51 -14.81 5.06 -886.06 -4.49 -19.30 16 16 C 0.04 1.27 5.30 85.56 0.45 1.73 16 17 C 0.45 20.30 7.58 87.66 0.66 20.97 16 18 O -0.61 -34.14 14.42 -3.07 -0.04 -34.18 16 19 N -0.59 -27.79 5.09 -306.97 -1.56 -29.35 16 20 C -0.33 -19.22 10.16 84.04 0.85 -18.37 16 21 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 22 C -0.02 -1.01 5.50 84.93 0.47 -0.54 16 23 N -0.94 -56.82 13.96 21.66 0.30 -56.52 16 24 Si 0.97 38.53 27.73 68.60 1.90 40.43 16 25 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 26 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 27 H -0.23 -7.53 6.53 99.48 0.65 -6.88 16 28 C 0.03 0.66 5.69 86.45 0.49 1.15 16 29 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.35 6.31 -2.38 -0.02 1.34 16 32 H 0.41 6.30 8.27 -92.71 -0.77 5.53 16 33 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.60 8.05 -2.39 -0.02 1.58 16 41 H 0.05 1.59 7.31 -2.39 -0.02 1.57 16 42 H 0.08 2.04 7.72 -2.38 -0.02 2.02 16 43 H 0.05 2.18 6.91 -2.39 -0.02 2.16 16 44 H 0.05 1.46 7.82 -2.39 -0.02 1.44 16 45 H 0.08 2.00 7.88 -2.38 -0.02 1.99 16 46 H 0.13 2.91 8.13 -2.38 -0.02 2.89 16 47 H 0.39 14.93 5.77 -92.71 -0.53 14.40 16 48 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 49 H 0.08 1.23 7.71 -2.38 -0.02 1.21 16 50 H 0.11 1.60 7.75 -2.39 -0.02 1.58 16 Total: -1.00 -81.81 394.66 -0.88 -82.69 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: -0.40 Total: 41.66 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.58 Total: 6.96 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -7.88 Total: -121.15 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.08 Total: -50.59 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 1.90 Total: 40.43 kcal Total: -81.81 -0.88 -82.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716849267.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.639 kcal (2) G-P(sol) polarization free energy of solvation -81.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds