Wall clock time and date at job start Tue Mar 31 2020 19:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 110.28789 * 2 1 4 4 C 1.34779 * 120.00324 * 60.66988 * 3 2 1 5 5 O 1.21281 * 119.99741 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00436 * 180.02562 * 4 3 2 7 7 H 1.09000 * 115.55700 * 325.73792 * 6 4 3 8 8 C 1.53123 * 117.51409 * 111.53781 * 6 4 3 9 9 C 1.52458 * 117.51365 * 180.02562 * 6 4 3 10 10 C 1.53257 * 128.58416 * 134.95208 * 9 6 4 11 11 C 1.53885 * 86.88467 * 194.88487 * 10 9 6 12 12 C 1.53257 * 128.58774 * 10.15458 * 9 6 4 13 13 C 1.54261 * 110.32293 * 122.12657 * 2 1 3 14 14 C 1.54378 * 105.06273 * 118.89520 * 13 2 1 15 15 N 1.48560 * 104.59243 * 23.85410 * 14 13 2 16 16 C 1.46902 * 111.00011 * 200.95847 * 15 14 13 17 17 C 1.50699 * 109.47237 * 176.47236 * 16 15 14 18 18 O 1.21294 * 120.00107 * 6.03758 * 17 16 15 19 19 N 1.34779 * 120.00311 * 186.03790 * 17 16 15 20 20 C 1.37092 * 120.00050 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00169 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99441 * 179.97438 * 20 19 17 23 23 N 1.31422 * 119.99513 * 180.02562 * 22 20 19 24 24 Si 1.86791 * 120.00432 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47226 * 89.99896 * 24 22 20 26 26 H 1.48500 * 109.47297 * 209.99865 * 24 22 20 27 27 H 1.48500 * 109.47002 * 329.99990 * 24 22 20 28 28 C 1.48560 * 104.22233 * 320.51475 * 15 14 13 29 29 H 1.08996 * 109.47005 * 299.32822 * 1 2 3 30 30 H 1.08997 * 109.46831 * 59.32765 * 1 2 3 31 31 H 1.09000 * 109.46924 * 179.32522 * 1 2 3 32 32 H 0.97007 * 120.00342 * 240.67232 * 3 2 1 33 33 H 1.09005 * 117.51377 * 214.90076 * 8 6 4 34 34 H 1.08996 * 117.51472 * 0.02562 * 8 6 4 35 35 H 1.08994 * 113.64922 * 309.38821 * 10 9 6 36 36 H 1.09008 * 113.64442 * 80.38732 * 10 9 6 37 37 H 1.09002 * 113.59102 * 270.39672 * 11 10 9 38 38 H 1.08999 * 113.65828 * 139.58336 * 11 10 9 39 39 H 1.09002 * 113.63917 * 279.60706 * 12 9 6 40 40 H 1.08992 * 113.64582 * 50.52095 * 12 9 6 41 41 H 1.09004 * 110.32555 * 359.97438 * 13 2 1 42 42 H 1.09000 * 110.32248 * 237.79633 * 13 2 1 43 43 H 1.08990 * 110.41477 * 265.07473 * 14 13 2 44 44 H 1.09006 * 110.41113 * 142.62531 * 14 13 2 45 45 H 1.08993 * 109.47018 * 56.47255 * 16 15 14 46 46 H 1.08998 * 109.46874 * 296.47367 * 16 15 14 47 47 H 0.97002 * 119.99418 * 359.97438 * 19 17 16 48 48 H 0.97000 * 119.99502 * 179.97438 * 23 22 20 49 49 H 1.09003 * 110.40863 * 158.25997 * 28 15 14 50 50 H 1.08995 * 110.41428 * 280.70252 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3741 0.0000 4 6 1.7354 2.2044 1.0176 5 8 1.0429 1.8139 1.9335 6 6 2.2574 3.6181 1.0173 7 1 3.2464 3.7541 0.5797 8 6 1.2402 4.7478 0.8334 9 6 1.8809 4.5081 2.1964 10 6 2.7780 5.4479 3.0094 11 6 1.6494 5.4844 4.0549 12 6 1.2053 4.1137 3.5143 13 6 2.0658 -0.7693 1.2251 14 6 2.8806 -1.9416 0.6377 15 7 3.2694 -1.4836 -0.7210 16 6 3.6069 -2.6233 -1.5842 17 6 3.9113 -2.1276 -2.9744 18 8 3.9604 -0.9362 -3.1963 19 7 4.1291 -3.0082 -3.9713 20 6 4.4055 -2.5573 -5.2361 21 1 4.4492 -1.4964 -5.4336 22 6 4.6305 -3.4652 -6.2636 23 7 4.8959 -3.0330 -7.4759 24 14 4.5556 -5.3001 -5.9218 25 1 3.1681 -5.7863 -6.1306 26 1 5.4743 -6.0135 -6.8449 27 1 4.9648 -5.5592 -4.5180 28 6 2.0662 -0.7723 -1.2245 29 1 -0.3633 0.5033 0.8959 30 1 -0.3633 0.5242 -0.8839 31 1 -0.3633 -1.0276 -0.0121 32 1 2.5921 1.6864 -0.7324 33 1 1.5600 5.6272 0.2743 34 1 0.1936 4.4683 0.7130 35 1 3.6924 4.9766 3.3693 36 1 2.9571 6.4083 2.5257 37 1 0.9215 6.2775 3.8836 38 1 2.0058 5.4526 5.0845 39 1 0.1237 4.0045 3.4355 40 1 1.6811 3.2701 4.0141 41 1 1.2388 -1.1465 1.8267 42 1 2.7081 -0.1250 1.8254 43 1 2.2649 -2.8387 0.5748 44 1 3.7671 -2.1296 1.2436 45 1 2.7640 -3.3133 -1.6210 46 1 4.4800 -3.1373 -1.1824 47 1 4.0902 -3.9610 -3.7937 48 1 5.0534 -3.6668 -8.1931 49 1 2.3395 -0.0798 -2.0208 50 1 1.3230 -1.4863 -1.5790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716849268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:19 Heat of formation + Delta-G solvation = -6.642066 kcal Electronic energy + Delta-G solvation = -29425.115619 eV Core-core repulsion = 25454.206958 eV Total energy + Delta-G solvation = -3970.908661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.71830 -39.64649 -38.49718 -37.44946 -34.55877 -33.92068 -33.84624 -31.75372 -31.38381 -29.58206 -27.55997 -25.87754 -25.61309 -24.46603 -23.67492 -23.27107 -21.36204 -20.59018 -19.41021 -19.34580 -18.54568 -18.28134 -17.12973 -16.57682 -15.73224 -15.60787 -15.42938 -15.28722 -14.98108 -14.95156 -14.62496 -14.37885 -13.79246 -13.46075 -13.15571 -13.04700 -12.81173 -12.63092 -12.53617 -12.47950 -12.23205 -12.19010 -12.02975 -11.89252 -11.74461 -11.64481 -11.51390 -11.33348 -11.04588 -10.84875 -10.77517 -10.61940 -10.52293 -10.28257 -10.01212 -9.95291 -9.58711 -9.50762 -8.98981 -8.61718 -8.24210 -8.14040 -6.34817 -3.86241 2.51200 2.99942 3.03882 3.11894 3.12559 3.58394 3.69104 3.98691 4.07301 4.19126 4.40774 4.48700 4.55117 4.58417 4.61350 4.67801 4.88824 5.02873 5.11241 5.14689 5.17632 5.23318 5.36590 5.40924 5.45436 5.50210 5.55823 5.59867 5.64309 5.66711 5.68192 5.73600 5.75705 5.76935 5.84505 5.90353 5.93794 5.97116 6.08962 6.09979 6.20105 6.21452 6.33706 6.66381 6.99404 7.06974 7.54409 7.64109 8.10122 8.31910 8.55952 8.91059 9.38437 9.78462 10.78147 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.002275 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.495810 B =12305.195740 C =12908.347811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 N -0.707 5.707 4 C 0.546 3.454 5 O -0.539 6.539 6 C -0.179 4.179 7 H 0.123 0.877 8 C -0.122 4.122 9 C -0.127 4.127 10 C -0.100 4.100 11 C -0.143 4.143 12 C -0.080 4.080 13 C -0.116 4.116 14 C 0.027 3.973 15 N -0.484 5.484 16 C 0.031 3.969 17 C 0.452 3.548 18 O -0.562 6.562 19 N -0.590 5.590 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.880 5.880 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.034 3.966 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.406 0.594 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.043 0.957 44 H 0.081 0.919 45 H 0.049 0.951 46 H 0.093 0.907 47 H 0.370 0.630 48 H 0.274 0.726 49 H 0.110 0.890 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.653 9.468 20.611 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.086 3.914 3 N -0.358 5.358 4 C 0.332 3.668 5 O -0.416 6.416 6 C -0.200 4.200 7 H 0.141 0.859 8 C -0.159 4.159 9 C -0.127 4.127 10 C -0.137 4.137 11 C -0.180 4.180 12 C -0.117 4.117 13 C -0.155 4.155 14 C -0.101 4.101 15 N -0.208 5.208 16 C -0.101 4.101 17 C 0.237 3.763 18 O -0.444 6.444 19 N -0.229 5.229 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.094 4.094 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.242 0.758 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.111 0.889 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.128 0.872 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.578 10.264 20.866 24.457 hybrid contribution -0.206 -2.159 -0.603 2.252 sum -7.783 8.104 20.263 23.170 Atomic orbital electron populations 1.22184 0.93852 1.02249 1.03239 1.21013 0.93475 0.81426 0.95524 1.46115 1.53303 1.11815 1.24608 1.19540 0.79747 0.85731 0.81761 1.90633 1.38395 1.76943 1.35671 1.22193 1.01318 0.90206 1.06324 0.85947 1.22785 0.97866 0.97956 0.97316 1.22272 1.01495 0.99617 0.89336 1.22507 0.96988 0.98175 0.96011 1.22817 0.98464 0.98340 0.98422 1.22296 1.00387 0.96375 0.92675 1.22618 0.99472 0.96509 0.96880 1.23233 0.98985 0.96542 0.91358 1.65200 1.33091 1.21598 1.00921 1.22126 1.01373 0.92795 0.93807 1.19598 0.84281 0.87095 0.85297 1.90515 1.55161 1.15618 1.83128 1.42218 1.64261 1.07095 1.09329 1.19414 1.45069 0.96670 0.82152 0.86251 1.25048 0.97497 0.98520 0.95125 1.69625 1.46892 1.35034 1.00470 0.86676 0.78924 0.85344 0.78484 1.19652 1.20137 1.19480 1.23491 0.90970 0.98349 0.96567 0.90409 0.92462 0.91977 0.75821 0.87693 0.88149 0.89615 0.91297 0.90254 0.91353 0.91406 0.89470 0.90732 0.90641 0.93894 0.90083 0.93255 0.88851 0.79706 0.91591 0.87168 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.16 37.16 0.30 -1.60 16 2 C 0.17 2.24 1.01 -130.44 -0.13 2.11 16 3 N -0.71 -8.85 5.10 -46.33 -0.24 -9.09 16 4 C 0.55 6.81 6.78 -10.99 -0.07 6.74 16 5 O -0.54 -7.80 12.43 5.56 0.07 -7.73 16 6 C -0.18 -1.83 6.19 -91.99 -0.57 -2.40 16 7 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 8 C -0.12 -1.07 10.24 -26.92 -0.28 -1.35 16 9 C -0.13 -1.19 2.88 -154.77 -0.45 -1.64 16 10 C -0.10 -0.77 8.10 -26.14 -0.21 -0.99 16 11 C -0.14 -1.08 8.08 -25.81 -0.21 -1.29 16 12 C -0.08 -0.78 6.47 -26.13 -0.17 -0.95 16 13 C -0.12 -1.46 5.48 -25.35 -0.14 -1.60 16 14 C 0.03 0.34 6.49 -2.18 -0.01 0.33 16 15 N -0.48 -7.59 5.18 -231.41 -1.20 -8.79 16 16 C 0.03 0.51 5.39 -4.98 -0.03 0.48 16 17 C 0.45 9.93 7.43 -10.99 -0.08 9.85 16 18 O -0.56 -14.28 14.00 5.55 0.08 -14.20 16 19 N -0.59 -13.74 5.09 -10.96 -0.06 -13.79 16 20 C -0.30 -8.43 10.16 -14.93 -0.15 -8.58 16 21 H 0.12 3.77 7.39 -52.49 -0.39 3.39 16 22 C 0.04 1.11 5.50 -17.46 -0.10 1.02 16 23 N -0.88 -25.39 13.96 55.50 0.77 -24.61 16 24 Si 0.88 19.12 27.74 -169.99 -4.71 14.40 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 28 C 0.03 0.52 4.78 -2.18 -0.01 0.51 16 29 H 0.08 1.02 6.31 -51.93 -0.33 0.69 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 32 H 0.41 4.96 8.27 -40.82 -0.34 4.62 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 41 H 0.07 0.88 7.71 -51.93 -0.40 0.48 16 42 H 0.07 1.04 7.31 -51.93 -0.38 0.66 16 43 H 0.04 0.49 7.92 -51.93 -0.41 0.08 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.05 0.71 7.98 -51.93 -0.41 0.30 16 46 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 48 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.11 1.97 6.15 -51.93 -0.32 1.65 16 50 H 0.05 0.79 7.66 -51.93 -0.40 0.39 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -31.93 393.86 -9.92 -41.85 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -8.27 Total: 15.38 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -2.30 Total: 0.65 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.72 Total: -56.29 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.15 Total: -21.93 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.93 -9.92 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716849268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.204 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds