Wall clock time and date at job start Tue Mar 31 2020 19:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 110.28789 * 2 1 4 4 C 1.34779 * 120.00324 * 60.66988 * 3 2 1 5 5 O 1.21281 * 119.99741 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00436 * 180.02562 * 4 3 2 7 7 H 1.09000 * 115.55700 * 325.73792 * 6 4 3 8 8 C 1.53123 * 117.51409 * 111.53781 * 6 4 3 9 9 C 1.52458 * 117.51365 * 180.02562 * 6 4 3 10 10 C 1.53257 * 128.58416 * 134.95208 * 9 6 4 11 11 C 1.53885 * 86.88467 * 194.88487 * 10 9 6 12 12 C 1.53257 * 128.58774 * 10.15458 * 9 6 4 13 13 C 1.54261 * 110.32293 * 122.12657 * 2 1 3 14 14 C 1.54378 * 105.06273 * 118.89520 * 13 2 1 15 15 N 1.48560 * 104.59243 * 23.85410 * 14 13 2 16 16 C 1.46902 * 111.00011 * 200.95847 * 15 14 13 17 17 C 1.50699 * 109.47237 * 176.47236 * 16 15 14 18 18 O 1.21294 * 120.00107 * 6.03758 * 17 16 15 19 19 N 1.34779 * 120.00311 * 186.03790 * 17 16 15 20 20 C 1.37092 * 120.00050 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00169 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99441 * 179.97438 * 20 19 17 23 23 N 1.31422 * 119.99513 * 180.02562 * 22 20 19 24 24 Si 1.86791 * 120.00432 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47226 * 89.99896 * 24 22 20 26 26 H 1.48500 * 109.47297 * 209.99865 * 24 22 20 27 27 H 1.48500 * 109.47002 * 329.99990 * 24 22 20 28 28 C 1.48560 * 104.22233 * 320.51475 * 15 14 13 29 29 H 1.08996 * 109.47005 * 299.32822 * 1 2 3 30 30 H 1.08997 * 109.46831 * 59.32765 * 1 2 3 31 31 H 1.09000 * 109.46924 * 179.32522 * 1 2 3 32 32 H 0.97007 * 120.00342 * 240.67232 * 3 2 1 33 33 H 1.09005 * 117.51377 * 214.90076 * 8 6 4 34 34 H 1.08996 * 117.51472 * 0.02562 * 8 6 4 35 35 H 1.08994 * 113.64922 * 309.38821 * 10 9 6 36 36 H 1.09008 * 113.64442 * 80.38732 * 10 9 6 37 37 H 1.09002 * 113.59102 * 270.39672 * 11 10 9 38 38 H 1.08999 * 113.65828 * 139.58336 * 11 10 9 39 39 H 1.09002 * 113.63917 * 279.60706 * 12 9 6 40 40 H 1.08992 * 113.64582 * 50.52095 * 12 9 6 41 41 H 1.09004 * 110.32555 * 359.97438 * 13 2 1 42 42 H 1.09000 * 110.32248 * 237.79633 * 13 2 1 43 43 H 1.08990 * 110.41477 * 265.07473 * 14 13 2 44 44 H 1.09006 * 110.41113 * 142.62531 * 14 13 2 45 45 H 1.08993 * 109.47018 * 56.47255 * 16 15 14 46 46 H 1.08998 * 109.46874 * 296.47367 * 16 15 14 47 47 H 0.97002 * 119.99418 * 359.97438 * 19 17 16 48 48 H 0.97000 * 119.99502 * 179.97438 * 23 22 20 49 49 H 1.09003 * 110.40863 * 158.25997 * 28 15 14 50 50 H 1.08995 * 110.41428 * 280.70252 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3741 0.0000 4 6 1.7354 2.2044 1.0176 5 8 1.0429 1.8139 1.9335 6 6 2.2574 3.6181 1.0173 7 1 3.2464 3.7541 0.5797 8 6 1.2402 4.7478 0.8334 9 6 1.8809 4.5081 2.1964 10 6 2.7780 5.4479 3.0094 11 6 1.6494 5.4844 4.0549 12 6 1.2053 4.1137 3.5143 13 6 2.0658 -0.7693 1.2251 14 6 2.8806 -1.9416 0.6377 15 7 3.2694 -1.4836 -0.7210 16 6 3.6069 -2.6233 -1.5842 17 6 3.9113 -2.1276 -2.9744 18 8 3.9604 -0.9362 -3.1963 19 7 4.1291 -3.0082 -3.9713 20 6 4.4055 -2.5573 -5.2361 21 1 4.4492 -1.4964 -5.4336 22 6 4.6305 -3.4652 -6.2636 23 7 4.8959 -3.0330 -7.4759 24 14 4.5556 -5.3001 -5.9218 25 1 3.1681 -5.7863 -6.1306 26 1 5.4743 -6.0135 -6.8449 27 1 4.9648 -5.5592 -4.5180 28 6 2.0662 -0.7723 -1.2245 29 1 -0.3633 0.5033 0.8959 30 1 -0.3633 0.5242 -0.8839 31 1 -0.3633 -1.0276 -0.0121 32 1 2.5921 1.6864 -0.7324 33 1 1.5600 5.6272 0.2743 34 1 0.1936 4.4683 0.7130 35 1 3.6924 4.9766 3.3693 36 1 2.9571 6.4083 2.5257 37 1 0.9215 6.2775 3.8836 38 1 2.0058 5.4526 5.0845 39 1 0.1237 4.0045 3.4355 40 1 1.6811 3.2701 4.0141 41 1 1.2388 -1.1465 1.8267 42 1 2.7081 -0.1250 1.8254 43 1 2.2649 -2.8387 0.5748 44 1 3.7671 -2.1296 1.2436 45 1 2.7640 -3.3133 -1.6210 46 1 4.4800 -3.1373 -1.1824 47 1 4.0902 -3.9610 -3.7937 48 1 5.0534 -3.6668 -8.1931 49 1 2.3395 -0.0798 -2.0208 50 1 1.3230 -1.4863 -1.5790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716849268.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:18 Heat of formation + Delta-G solvation = -29.718477 kcal Electronic energy + Delta-G solvation = -29426.116287 eV Core-core repulsion = 25454.206958 eV Total energy + Delta-G solvation = -3971.909329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.69725 -40.75048 -39.88161 -38.64867 -36.07311 -35.48331 -34.62467 -33.74477 -32.52605 -30.66542 -28.93426 -27.04698 -26.56580 -25.66705 -24.96370 -23.92435 -22.50027 -21.56376 -21.23668 -20.39714 -20.16110 -19.28910 -18.05120 -17.87413 -17.20490 -16.89578 -16.57624 -16.30493 -16.09295 -16.05696 -15.79322 -15.40630 -15.14977 -15.04634 -14.70753 -14.35199 -14.13038 -13.84241 -13.67651 -13.46504 -13.35146 -13.19421 -13.03773 -13.01733 -12.93430 -12.65094 -12.42555 -12.40992 -12.32521 -12.28063 -11.98311 -11.91012 -11.82571 -11.46818 -11.22940 -11.00199 -10.72535 -10.46575 -10.36539 -10.23281 -10.01549 -9.40461 -8.40819 -6.01075 1.30330 1.34994 1.44090 1.57038 1.95347 2.17226 2.22897 2.65091 2.80264 3.15519 3.18425 3.35967 3.48754 3.70382 3.75397 3.82073 3.91232 3.98024 4.03846 4.13281 4.19410 4.22301 4.29503 4.40075 4.50830 4.52440 4.61878 4.66332 4.72384 4.72851 4.77646 4.79496 4.86410 4.91100 4.94051 5.01844 5.04192 5.09944 5.17414 5.18450 5.23877 5.41082 5.52595 5.53010 5.62232 5.81589 5.89911 6.01516 6.59796 6.63139 6.89004 7.32024 7.40305 7.96622 8.76567 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.002275 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.495810 B =12305.195740 C =12908.347811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.173 3.827 3 N -0.709 5.709 4 C 0.544 3.456 5 O -0.561 6.561 6 C -0.192 4.192 7 H 0.132 0.868 8 C -0.111 4.111 9 C -0.133 4.133 10 C -0.094 4.094 11 C -0.133 4.133 12 C -0.088 4.088 13 C -0.109 4.109 14 C 0.033 3.967 15 N -0.506 5.506 16 C 0.042 3.958 17 C 0.452 3.548 18 O -0.603 6.603 19 N -0.592 5.592 20 C -0.324 4.324 21 H 0.057 0.943 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.962 3.038 25 H -0.258 1.258 26 H -0.277 1.277 27 H -0.231 1.231 28 C 0.039 3.961 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.405 0.595 33 H 0.126 0.874 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.121 0.879 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.075 0.925 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 7.614 22.955 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.087 3.913 3 N -0.360 5.360 4 C 0.331 3.669 5 O -0.440 6.440 6 C -0.213 4.213 7 H 0.150 0.850 8 C -0.149 4.149 9 C -0.134 4.134 10 C -0.131 4.131 11 C -0.170 4.170 12 C -0.125 4.125 13 C -0.148 4.148 14 C -0.094 4.094 15 N -0.230 5.230 16 C -0.090 4.090 17 C 0.239 3.761 18 O -0.487 6.487 19 N -0.234 5.234 20 C -0.453 4.453 21 H 0.076 0.924 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.783 3.217 25 H -0.182 1.182 26 H -0.202 1.202 27 H -0.155 1.155 28 C -0.089 4.089 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.241 0.759 33 H 0.144 0.856 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.100 0.900 46 H 0.138 0.862 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.923 8.416 23.246 25.961 hybrid contribution -0.121 -1.436 -1.325 1.957 sum -8.043 6.980 21.921 24.371 Atomic orbital electron populations 1.22118 0.93133 1.03029 1.02514 1.21007 0.93933 0.81537 0.94840 1.46167 1.53260 1.11884 1.24682 1.19913 0.79259 0.86505 0.81176 1.90616 1.39467 1.77542 1.36385 1.22222 1.02143 0.89161 1.07811 0.85049 1.22858 0.97136 0.97800 0.97070 1.22477 1.01983 0.99649 0.89264 1.22518 0.96756 0.98313 0.95542 1.22794 0.98375 0.96900 0.98924 1.22279 0.99470 0.97295 0.93451 1.22554 0.99534 0.96331 0.96368 1.23278 0.99841 0.97033 0.89276 1.65159 1.33706 1.21935 1.02233 1.22072 1.03758 0.93348 0.89795 1.20776 0.81694 0.86435 0.87175 1.90513 1.56029 1.17802 1.84322 1.42046 1.65106 1.08239 1.08003 1.18981 1.47014 0.94372 0.84918 0.92442 1.26097 0.96149 1.05058 0.94185 1.69807 1.48131 1.37596 1.01967 0.85394 0.79518 0.76497 0.80318 1.18232 1.20180 1.15476 1.23333 0.91044 0.98058 0.96479 0.91366 0.92838 0.90461 0.75910 0.85561 0.88867 0.89532 0.89839 0.89269 0.90373 0.92641 0.91079 0.89684 0.92066 0.91599 0.88907 0.90033 0.86154 0.77601 0.91223 0.90621 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.16 71.98 0.59 -2.93 16 2 C 0.17 4.42 1.01 4.50 0.00 4.42 16 3 N -0.71 -18.07 5.10 -418.88 -2.13 -20.20 16 4 C 0.54 13.74 6.78 87.66 0.59 14.33 16 5 O -0.56 -16.42 12.43 -3.03 -0.04 -16.46 16 6 C -0.19 -3.88 6.19 -11.68 -0.07 -3.95 16 7 H 0.13 2.36 8.14 -2.39 -0.02 2.35 16 8 C -0.11 -1.87 10.24 30.47 0.31 -1.56 16 9 C -0.13 -2.41 2.88 -52.35 -0.15 -2.56 16 10 C -0.09 -1.31 8.10 30.98 0.25 -1.06 16 11 C -0.13 -1.80 8.08 31.19 0.25 -1.55 16 12 C -0.09 -1.69 6.47 30.98 0.20 -1.49 16 13 C -0.11 -2.56 5.48 31.49 0.17 -2.39 16 14 C 0.03 0.73 6.49 86.45 0.56 1.29 16 15 N -0.51 -14.92 5.18 -886.06 -4.59 -19.51 16 16 C 0.04 1.25 5.39 85.56 0.46 1.71 16 17 C 0.45 19.69 7.43 87.66 0.65 20.34 16 18 O -0.60 -31.76 14.00 -3.07 -0.04 -31.80 16 19 N -0.59 -27.21 5.09 -306.98 -1.56 -28.77 16 20 C -0.32 -18.57 10.16 84.04 0.85 -17.72 16 21 H 0.06 3.93 7.39 -2.91 -0.02 3.90 16 22 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 23 N -0.93 -55.78 13.96 21.67 0.30 -55.48 16 24 Si 0.96 38.27 27.74 68.60 1.90 40.17 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 28 C 0.04 1.17 4.78 86.45 0.41 1.59 16 29 H 0.07 1.76 6.31 -2.39 -0.02 1.75 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.56 8.12 -2.39 -0.02 1.54 16 32 H 0.41 10.37 8.27 -92.70 -0.77 9.60 16 33 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.58 8.05 -2.39 -0.02 1.57 16 41 H 0.08 1.83 7.71 -2.39 -0.02 1.81 16 42 H 0.06 1.62 7.31 -2.39 -0.02 1.61 16 43 H 0.07 1.19 7.92 -2.39 -0.02 1.17 16 44 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 45 H 0.08 1.98 7.98 -2.39 -0.02 1.96 16 46 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 47 H 0.39 14.81 5.76 -92.71 -0.53 14.28 16 48 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 49 H 0.08 2.81 6.15 -2.39 -0.01 2.80 16 50 H 0.06 1.61 7.66 -2.39 -0.02 1.60 16 Total: -1.00 -74.51 393.86 -1.01 -75.52 By element: Atomic # 1 Polarization: 48.91 SS G_CDS: -0.40 Total: 48.50 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 5.56 Total: 8.03 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -7.99 Total: -123.96 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -0.08 Total: -48.26 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.90 Total: 40.17 kcal Total: -74.51 -1.01 -75.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716849268.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.804 kcal (2) G-P(sol) polarization free energy of solvation -74.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds