Wall clock time and date at job start Tue Mar 31 2020 19:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 110.28514 * 2 1 4 4 C 1.34782 * 119.99995 * 60.67813 * 3 2 1 5 5 O 1.21275 * 119.99504 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99746 * 180.02562 * 4 3 2 7 7 H 1.09001 * 115.56436 * 34.41262 * 6 4 3 8 8 C 1.53128 * 117.51069 * 248.67778 * 6 4 3 9 9 C 1.52464 * 117.51256 * 180.15160 * 6 4 3 10 10 C 1.53255 * 128.58207 * 349.84736 * 9 6 4 11 11 C 1.53883 * 86.88406 * 194.88622 * 10 9 6 12 12 C 1.53251 * 128.58904 * 225.04785 * 9 6 4 13 13 C 1.54250 * 110.32555 * 122.12817 * 2 1 3 14 14 C 1.54386 * 105.06151 * 118.89711 * 13 2 1 15 15 N 1.48558 * 104.69623 * 23.78999 * 14 13 2 16 16 C 1.46900 * 110.99989 * 201.01870 * 15 14 13 17 17 C 1.50701 * 109.47086 * 176.48407 * 16 15 14 18 18 O 1.21297 * 120.00020 * 6.04854 * 17 16 15 19 19 N 1.34773 * 120.00161 * 186.05668 * 17 16 15 20 20 C 1.37094 * 120.00371 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00091 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00048 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00272 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99820 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46897 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47046 * 120.00322 * 24 22 20 27 27 H 1.48502 * 109.47104 * 240.00321 * 24 22 20 28 28 C 1.48669 * 104.17023 * 320.67969 * 15 14 13 29 29 H 1.08995 * 109.47174 * 299.32292 * 1 2 3 30 30 H 1.08993 * 109.47156 * 59.32903 * 1 2 3 31 31 H 1.09005 * 109.47011 * 179.32666 * 1 2 3 32 32 H 0.97004 * 120.00435 * 240.67086 * 3 2 1 33 33 H 1.09005 * 117.51242 * 359.97438 * 8 6 4 34 34 H 1.08998 * 117.51418 * 145.10760 * 8 6 4 35 35 H 1.09005 * 113.64397 * 309.38370 * 10 9 6 36 36 H 1.09000 * 113.64792 * 80.39020 * 10 9 6 37 37 H 1.09000 * 113.59375 * 270.39322 * 11 10 9 38 38 H 1.09003 * 113.66588 * 139.58005 * 11 10 9 39 39 H 1.09000 * 113.64452 * 279.60944 * 12 9 6 40 40 H 1.09006 * 113.64590 * 50.60926 * 12 9 6 41 41 H 1.09007 * 110.32931 * 0.02562 * 13 2 1 42 42 H 1.08996 * 110.41390 * 237.83518 * 13 2 1 43 43 H 1.08992 * 110.41395 * 142.63403 * 14 13 2 44 44 H 1.09003 * 110.40693 * 264.95821 * 14 13 2 45 45 H 1.09006 * 109.47004 * 296.47994 * 16 15 14 46 46 H 1.08993 * 109.47108 * 56.48251 * 16 15 14 47 47 H 0.97003 * 119.99732 * 359.97438 * 19 17 16 48 48 H 0.96998 * 120.00600 * 179.97438 * 23 22 20 49 49 H 1.09000 * 110.29839 * 280.54678 * 28 15 14 50 50 H 1.08995 * 110.44108 * 158.16353 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0379 1.3741 0.0000 4 6 1.7354 2.2044 1.0177 5 8 1.0424 1.8140 1.9331 6 6 2.2574 3.6181 1.0174 7 1 2.3382 4.0894 0.0379 8 6 3.3106 3.9834 2.0671 9 6 1.8834 4.5072 2.1981 10 6 0.8648 4.2394 3.3113 11 6 0.9596 5.7389 3.6437 12 6 1.3931 5.9591 2.1837 13 6 2.0658 -0.7692 1.2249 14 6 2.8808 -1.9416 0.6375 15 7 3.2694 -1.4864 -0.7222 16 6 3.6051 -2.6280 -1.5836 17 6 3.9097 -2.1351 -2.9747 18 8 3.9605 -0.9441 -3.1986 19 7 4.1256 -3.0177 -3.9702 20 6 4.4022 -2.5693 -5.2359 21 1 4.4475 -1.5089 -5.4352 22 6 4.6253 -3.4793 -6.2620 23 7 4.5707 -4.7696 -6.0194 24 14 5.0029 -2.8683 -7.9865 25 1 5.0073 -1.3834 -7.9955 26 1 6.3355 -3.3695 -8.4084 27 1 3.9664 -3.3664 -8.9261 28 6 2.0662 -0.7721 -1.2246 29 1 -0.3633 0.5033 0.8959 30 1 -0.3633 0.5242 -0.8838 31 1 -0.3633 -1.0276 -0.0121 32 1 2.5921 1.6865 -0.7324 33 1 3.6254 3.2012 2.7581 34 1 4.0836 4.6955 1.7783 35 1 -0.1149 3.9342 2.9433 36 1 1.2420 3.5915 4.1025 37 1 1.7369 5.9764 4.3701 38 1 -0.0002 6.1946 3.8872 39 1 2.1940 6.6899 2.0709 40 1 0.5606 6.1327 1.5018 41 1 1.2389 -1.1473 1.8261 42 1 2.7078 -0.1261 1.8268 43 1 3.7671 -2.1297 1.2433 44 1 2.2654 -2.8392 0.5764 45 1 4.4779 -3.1425 -1.1812 46 1 2.7614 -3.3170 -1.6188 47 1 4.0853 -3.9702 -3.7910 48 1 4.7260 -5.4049 -6.7357 49 1 1.3230 -1.4863 -1.5790 50 1 2.3394 -0.0798 -2.0209 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716849269.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:23 Heat of formation + Delta-G solvation = -13.897992 kcal Electronic energy + Delta-G solvation = -29385.541343 eV Core-core repulsion = 25414.318041 eV Total energy + Delta-G solvation = -3971.223302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.68776 -39.58108 -38.37585 -37.34321 -34.50193 -33.87383 -33.81879 -31.48582 -31.14327 -29.50259 -27.40376 -25.87386 -25.56394 -24.49579 -23.74234 -23.27039 -21.33870 -20.56054 -19.32995 -19.17945 -18.53143 -17.88036 -17.13583 -16.52664 -15.74053 -15.44650 -15.42336 -15.28809 -14.93202 -14.72432 -14.54803 -14.30429 -13.76428 -13.64416 -13.17954 -12.97490 -12.86288 -12.60818 -12.38946 -12.33422 -12.14859 -11.98730 -11.89748 -11.74181 -11.68442 -11.54646 -11.39776 -11.21654 -10.95305 -10.79236 -10.72440 -10.51356 -10.37056 -10.26121 -10.25799 -9.95409 -9.53125 -9.48199 -8.96197 -8.48653 -8.08011 -7.97269 -6.44964 -3.85853 2.53514 3.13183 3.13886 3.24536 3.31251 3.60118 3.86750 4.03238 4.20275 4.24711 4.41133 4.51383 4.58845 4.61936 4.68720 4.75112 5.02345 5.04171 5.14996 5.19154 5.24399 5.29543 5.38295 5.45517 5.48762 5.50600 5.59615 5.66404 5.70346 5.72540 5.74412 5.77919 5.81488 5.83999 5.94712 5.97016 6.01753 6.10306 6.14239 6.20190 6.23502 6.25297 6.38862 6.70298 7.07961 7.19443 7.52095 7.66450 8.02803 8.34041 8.57857 9.14606 9.50814 10.01973 10.72763 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.002271 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.927128 B =12328.174343 C =13136.654302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 N -0.707 5.707 4 C 0.545 3.455 5 O -0.539 6.539 6 C -0.179 4.179 7 H 0.121 0.879 8 C -0.121 4.121 9 C -0.127 4.127 10 C -0.080 4.080 11 C -0.143 4.143 12 C -0.100 4.100 13 C -0.115 4.115 14 C 0.027 3.973 15 N -0.484 5.484 16 C 0.034 3.966 17 C 0.443 3.557 18 O -0.581 6.581 19 N -0.563 5.563 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.036 3.964 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.406 0.594 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.043 0.957 45 H 0.092 0.908 46 H 0.049 0.951 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.052 0.948 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.694 13.263 17.029 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.085 3.915 3 N -0.358 5.358 4 C 0.332 3.668 5 O -0.416 6.416 6 C -0.200 4.200 7 H 0.139 0.861 8 C -0.158 4.158 9 C -0.128 4.128 10 C -0.117 4.117 11 C -0.180 4.180 12 C -0.137 4.137 13 C -0.154 4.154 14 C -0.102 4.102 15 N -0.208 5.208 16 C -0.098 4.098 17 C 0.228 3.772 18 O -0.465 6.465 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.092 4.092 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.241 0.759 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.061 0.939 45 H 0.110 0.890 46 H 0.067 0.933 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.070 0.930 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.644 13.936 17.380 23.247 hybrid contribution -0.069 -1.048 -1.455 1.794 sum -6.713 12.887 15.926 21.559 Atomic orbital electron populations 1.22184 0.93881 1.02266 1.03190 1.21021 0.93434 0.81368 0.95633 1.46119 1.53084 1.11858 1.24751 1.19539 0.79810 0.85678 0.81804 1.90632 1.38168 1.76995 1.35819 1.22184 1.06652 0.94377 0.96790 0.86077 1.22796 0.90878 1.02476 0.99650 1.22289 0.97552 0.95521 0.97418 1.22294 0.98258 0.95219 0.95948 1.22818 1.01428 0.97449 0.96352 1.22507 1.00553 0.93344 0.97289 1.22609 0.99440 0.96540 0.96841 1.23226 0.98938 0.96496 0.91495 1.65199 1.33009 1.21733 1.00881 1.22088 1.01271 0.92509 0.93916 1.19698 0.84721 0.87151 0.85600 1.90474 1.56744 1.15911 1.83374 1.41878 1.61616 1.08431 1.08035 1.19734 1.44523 0.94603 0.83907 0.87853 1.25273 0.97461 0.94942 1.00324 1.69615 1.49785 1.00763 1.34054 0.85804 0.77920 0.79101 0.81538 1.19225 1.20734 1.20768 1.23476 0.91049 0.98261 0.96403 0.90411 0.92525 0.91947 0.75879 0.88096 0.87703 0.89499 0.91358 0.90241 0.91372 0.91313 0.89676 0.90789 0.90748 0.90170 0.93920 0.89017 0.93342 0.77480 0.91896 0.93010 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.16 37.16 0.30 -1.67 16 2 C 0.17 2.31 1.01 -130.44 -0.13 2.18 16 3 N -0.71 -9.04 5.10 -46.34 -0.24 -9.27 16 4 C 0.55 6.92 6.78 -10.98 -0.07 6.84 16 5 O -0.54 -7.92 12.43 5.56 0.07 -7.85 16 6 C -0.18 -1.84 6.19 -91.98 -0.57 -2.41 16 7 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 8 C -0.12 -1.10 10.24 -26.87 -0.28 -1.38 16 9 C -0.13 -1.21 2.88 -154.73 -0.45 -1.65 16 10 C -0.08 -0.78 6.47 -26.14 -0.17 -0.95 16 11 C -0.14 -1.08 8.08 -25.81 -0.21 -1.29 16 12 C -0.10 -0.77 8.10 -26.14 -0.21 -0.98 16 13 C -0.12 -1.51 5.48 -25.35 -0.14 -1.65 16 14 C 0.03 0.36 6.49 -2.18 -0.01 0.34 16 15 N -0.48 -7.97 5.18 -231.32 -1.20 -9.17 16 16 C 0.03 0.60 5.39 -4.98 -0.03 0.57 16 17 C 0.44 10.17 7.43 -10.99 -0.08 10.09 16 18 O -0.58 -14.96 14.01 5.54 0.08 -14.88 16 19 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 20 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 24 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 28 C 0.04 0.57 4.79 -2.12 -0.01 0.56 16 29 H 0.08 1.05 6.31 -51.93 -0.33 0.72 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.41 5.04 8.27 -40.82 -0.34 4.70 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.94 8.05 -51.93 -0.42 0.53 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 42 H 0.07 1.05 7.32 -51.93 -0.38 0.67 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.04 0.53 7.92 -51.93 -0.41 0.11 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.05 0.78 7.98 -51.93 -0.41 0.37 16 47 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.05 0.82 7.66 -51.93 -0.40 0.42 16 50 H 0.11 1.99 6.16 -51.93 -0.32 1.67 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -30.75 397.03 -10.27 -41.02 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -8.31 Total: 15.23 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.30 Total: 0.78 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.77 Total: -56.04 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.15 Total: -22.73 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.75 -10.27 -41.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716849269.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.120 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds