Wall clock time and date at job start Tue Mar 31 2020 19:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 110.28514 * 2 1 4 4 C 1.34782 * 119.99995 * 60.67813 * 3 2 1 5 5 O 1.21275 * 119.99504 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99746 * 180.02562 * 4 3 2 7 7 H 1.09001 * 115.56436 * 34.41262 * 6 4 3 8 8 C 1.53128 * 117.51069 * 248.67778 * 6 4 3 9 9 C 1.52464 * 117.51256 * 180.15160 * 6 4 3 10 10 C 1.53255 * 128.58207 * 349.84736 * 9 6 4 11 11 C 1.53883 * 86.88406 * 194.88622 * 10 9 6 12 12 C 1.53251 * 128.58904 * 225.04785 * 9 6 4 13 13 C 1.54250 * 110.32555 * 122.12817 * 2 1 3 14 14 C 1.54386 * 105.06151 * 118.89711 * 13 2 1 15 15 N 1.48558 * 104.69623 * 23.78999 * 14 13 2 16 16 C 1.46900 * 110.99989 * 201.01870 * 15 14 13 17 17 C 1.50701 * 109.47086 * 176.48407 * 16 15 14 18 18 O 1.21297 * 120.00020 * 6.04854 * 17 16 15 19 19 N 1.34773 * 120.00161 * 186.05668 * 17 16 15 20 20 C 1.37094 * 120.00371 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00091 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00048 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00272 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99820 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46897 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47046 * 120.00322 * 24 22 20 27 27 H 1.48502 * 109.47104 * 240.00321 * 24 22 20 28 28 C 1.48669 * 104.17023 * 320.67969 * 15 14 13 29 29 H 1.08995 * 109.47174 * 299.32292 * 1 2 3 30 30 H 1.08993 * 109.47156 * 59.32903 * 1 2 3 31 31 H 1.09005 * 109.47011 * 179.32666 * 1 2 3 32 32 H 0.97004 * 120.00435 * 240.67086 * 3 2 1 33 33 H 1.09005 * 117.51242 * 359.97438 * 8 6 4 34 34 H 1.08998 * 117.51418 * 145.10760 * 8 6 4 35 35 H 1.09005 * 113.64397 * 309.38370 * 10 9 6 36 36 H 1.09000 * 113.64792 * 80.39020 * 10 9 6 37 37 H 1.09000 * 113.59375 * 270.39322 * 11 10 9 38 38 H 1.09003 * 113.66588 * 139.58005 * 11 10 9 39 39 H 1.09000 * 113.64452 * 279.60944 * 12 9 6 40 40 H 1.09006 * 113.64590 * 50.60926 * 12 9 6 41 41 H 1.09007 * 110.32931 * 0.02562 * 13 2 1 42 42 H 1.08996 * 110.41390 * 237.83518 * 13 2 1 43 43 H 1.08992 * 110.41395 * 142.63403 * 14 13 2 44 44 H 1.09003 * 110.40693 * 264.95821 * 14 13 2 45 45 H 1.09006 * 109.47004 * 296.47994 * 16 15 14 46 46 H 1.08993 * 109.47108 * 56.48251 * 16 15 14 47 47 H 0.97003 * 119.99732 * 359.97438 * 19 17 16 48 48 H 0.96998 * 120.00600 * 179.97438 * 23 22 20 49 49 H 1.09000 * 110.29839 * 280.54678 * 28 15 14 50 50 H 1.08995 * 110.44108 * 158.16353 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0379 1.3741 0.0000 4 6 1.7354 2.2044 1.0177 5 8 1.0424 1.8140 1.9331 6 6 2.2574 3.6181 1.0174 7 1 2.3382 4.0894 0.0379 8 6 3.3106 3.9834 2.0671 9 6 1.8834 4.5072 2.1981 10 6 0.8648 4.2394 3.3113 11 6 0.9596 5.7389 3.6437 12 6 1.3931 5.9591 2.1837 13 6 2.0658 -0.7692 1.2249 14 6 2.8808 -1.9416 0.6375 15 7 3.2694 -1.4864 -0.7222 16 6 3.6051 -2.6280 -1.5836 17 6 3.9097 -2.1351 -2.9747 18 8 3.9605 -0.9441 -3.1986 19 7 4.1256 -3.0177 -3.9702 20 6 4.4022 -2.5693 -5.2359 21 1 4.4475 -1.5089 -5.4352 22 6 4.6253 -3.4793 -6.2620 23 7 4.5707 -4.7696 -6.0194 24 14 5.0029 -2.8683 -7.9865 25 1 5.0073 -1.3834 -7.9955 26 1 6.3355 -3.3695 -8.4084 27 1 3.9664 -3.3664 -8.9261 28 6 2.0662 -0.7721 -1.2246 29 1 -0.3633 0.5033 0.8959 30 1 -0.3633 0.5242 -0.8838 31 1 -0.3633 -1.0276 -0.0121 32 1 2.5921 1.6865 -0.7324 33 1 3.6254 3.2012 2.7581 34 1 4.0836 4.6955 1.7783 35 1 -0.1149 3.9342 2.9433 36 1 1.2420 3.5915 4.1025 37 1 1.7369 5.9764 4.3701 38 1 -0.0002 6.1946 3.8872 39 1 2.1940 6.6899 2.0709 40 1 0.5606 6.1327 1.5018 41 1 1.2389 -1.1473 1.8261 42 1 2.7078 -0.1261 1.8268 43 1 3.7671 -2.1297 1.2433 44 1 2.2654 -2.8392 0.5764 45 1 4.4779 -3.1425 -1.1812 46 1 2.7614 -3.3170 -1.6188 47 1 4.0853 -3.9702 -3.7910 48 1 4.7260 -5.4049 -6.7357 49 1 1.3230 -1.4863 -1.5790 50 1 2.3394 -0.0798 -2.0209 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716849269.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:22 Heat of formation + Delta-G solvation = -34.630986 kcal Electronic energy + Delta-G solvation = -29386.440393 eV Core-core repulsion = 25414.318041 eV Total energy + Delta-G solvation = -3972.122352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.68498 -40.68779 -39.79748 -38.61744 -36.04058 -35.45815 -34.61706 -33.28645 -32.48381 -30.64556 -28.82889 -27.06448 -26.55963 -25.79062 -24.97842 -23.92251 -22.54208 -21.56126 -20.96910 -20.38125 -19.85843 -19.28253 -18.06864 -17.87749 -17.21011 -16.73169 -16.47405 -16.32500 -16.09735 -16.03641 -15.77603 -15.56630 -15.25683 -15.08905 -14.66563 -14.12431 -13.87162 -13.73591 -13.56106 -13.41318 -13.31652 -13.18947 -13.03340 -12.96900 -12.91916 -12.65351 -12.41949 -12.39753 -12.33990 -12.26235 -12.11186 -11.91149 -11.83032 -11.46566 -11.22234 -10.98574 -10.73216 -10.45208 -10.27870 -10.01758 -9.99953 -9.40173 -8.46365 -5.94556 1.36388 1.41990 1.55723 1.58080 2.04913 2.16889 2.28248 2.80515 2.81709 3.20730 3.30413 3.37166 3.49582 3.70327 3.78627 3.82711 3.91938 3.98740 4.05004 4.15542 4.21466 4.29430 4.30538 4.45302 4.52361 4.54005 4.63251 4.66504 4.72003 4.73014 4.77150 4.80870 4.86839 4.91566 4.93319 5.01700 5.04211 5.10315 5.16704 5.19037 5.23095 5.41671 5.41854 5.53326 5.62200 5.80106 5.89004 6.07375 6.60367 6.64387 7.13381 7.32872 7.56745 8.11710 8.71276 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.002271 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.927128 B =12328.174343 C =13136.654302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.175 3.825 3 N -0.708 5.708 4 C 0.543 3.457 5 O -0.561 6.561 6 C -0.191 4.191 7 H 0.135 0.865 8 C -0.112 4.112 9 C -0.133 4.133 10 C -0.088 4.088 11 C -0.133 4.133 12 C -0.093 4.093 13 C -0.108 4.108 14 C 0.031 3.969 15 N -0.502 5.502 16 C 0.045 3.955 17 C 0.442 3.558 18 O -0.612 6.612 19 N -0.574 5.574 20 C -0.328 4.328 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.272 1.272 28 C 0.041 3.959 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.406 0.594 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.111 0.889 46 H 0.070 0.930 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.051 0.949 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.622 13.721 17.595 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.088 3.912 3 N -0.359 5.359 4 C 0.331 3.669 5 O -0.441 6.441 6 C -0.212 4.212 7 H 0.152 0.848 8 C -0.150 4.150 9 C -0.133 4.133 10 C -0.126 4.126 11 C -0.170 4.170 12 C -0.130 4.130 13 C -0.147 4.147 14 C -0.096 4.096 15 N -0.226 5.226 16 C -0.086 4.086 17 C 0.229 3.771 18 O -0.498 6.498 19 N -0.212 5.212 20 C -0.458 4.458 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.197 1.197 28 C -0.087 4.087 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.242 0.758 33 H 0.109 0.891 34 H 0.145 0.855 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.129 0.871 46 H 0.088 0.912 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.069 0.931 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.573 14.382 17.965 23.933 hybrid contribution -0.109 -1.188 -1.564 1.967 sum -6.683 13.194 16.401 22.085 Atomic orbital electron populations 1.22119 0.93136 1.02932 1.02625 1.20975 0.93898 0.81605 0.94710 1.46149 1.53075 1.11759 1.24921 1.19943 0.79295 0.86503 0.81169 1.90617 1.39213 1.77646 1.36579 1.22226 1.07894 0.93073 0.97963 0.84765 1.22863 0.91160 1.02402 0.98543 1.22487 0.97655 0.96570 0.96627 1.22284 0.97592 0.96773 0.95919 1.22795 1.02303 0.95307 0.96639 1.22516 1.00984 0.92251 0.97270 1.22544 0.99476 0.96231 0.96424 1.23276 0.99777 0.97041 0.89540 1.65170 1.33731 1.21681 1.02054 1.21972 1.02909 0.93111 0.90614 1.20655 0.82678 0.86542 0.87207 1.90459 1.57491 1.17428 1.84388 1.41942 1.62507 1.08807 1.07911 1.19676 1.46529 0.93873 0.85677 0.90164 1.26034 0.96795 0.95061 1.03564 1.69675 1.49849 1.01425 1.35285 0.84883 0.78173 0.78239 0.77126 1.19683 1.19767 1.19736 1.23325 0.90899 0.97908 0.96549 0.91255 0.92687 0.90703 0.75822 0.89066 0.85547 0.91063 0.92732 0.89327 0.90375 0.89806 0.89426 0.89776 0.91865 0.89040 0.92137 0.87106 0.91233 0.77098 0.91383 0.93076 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 8.16 71.98 0.59 -3.09 16 2 C 0.17 4.63 1.01 4.50 0.00 4.63 16 3 N -0.71 -18.20 5.10 -418.90 -2.14 -20.34 16 4 C 0.54 13.79 6.78 87.65 0.59 14.38 16 5 O -0.56 -16.64 12.43 -3.02 -0.04 -16.68 16 6 C -0.19 -3.80 6.19 -11.68 -0.07 -3.87 16 7 H 0.13 2.27 8.14 -2.39 -0.02 2.26 16 8 C -0.11 -1.92 10.24 30.50 0.31 -1.61 16 9 C -0.13 -2.39 2.88 -52.33 -0.15 -2.54 16 10 C -0.09 -1.71 6.47 30.98 0.20 -1.51 16 11 C -0.13 -1.80 8.08 31.19 0.25 -1.55 16 12 C -0.09 -1.26 8.10 30.98 0.25 -1.01 16 13 C -0.11 -2.69 5.48 31.49 0.17 -2.52 16 14 C 0.03 0.76 6.49 86.45 0.56 1.33 16 15 N -0.50 -15.98 5.18 -885.75 -4.59 -20.57 16 16 C 0.05 1.54 5.39 85.56 0.46 2.00 16 17 C 0.44 20.43 7.43 87.66 0.65 21.08 16 18 O -0.61 -32.26 14.01 -3.08 -0.04 -32.30 16 19 N -0.57 -28.90 5.29 -306.99 -1.62 -30.52 16 20 C -0.33 -18.28 9.68 84.04 0.81 -17.47 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.02 -0.79 5.50 84.93 0.47 -0.33 16 23 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 24 Si 0.99 42.48 29.55 68.60 2.03 44.51 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 C 0.04 1.30 4.79 86.43 0.41 1.72 16 29 H 0.07 1.85 6.31 -2.39 -0.02 1.83 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.63 8.12 -2.38 -0.02 1.61 16 32 H 0.41 10.31 8.27 -92.71 -0.77 9.54 16 33 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.59 8.05 -2.38 -0.02 1.57 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.08 1.94 7.71 -2.38 -0.02 1.92 16 42 H 0.06 1.73 7.32 -2.39 -0.02 1.71 16 43 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.06 1.30 7.92 -2.39 -0.02 1.28 16 45 H 0.11 3.37 8.14 -2.38 -0.02 3.35 16 46 H 0.07 2.09 7.98 -2.39 -0.02 2.08 16 47 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 48 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 49 H 0.05 1.59 7.66 -2.39 -0.02 1.57 16 50 H 0.08 2.98 6.16 -2.39 -0.01 2.97 16 Total: -1.00 -66.58 397.03 -1.15 -67.72 By element: Atomic # 1 Polarization: 48.09 SS G_CDS: -0.54 Total: 47.55 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 5.52 Total: 9.65 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -8.07 Total: -120.46 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -0.08 Total: -48.98 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -66.58 -1.15 -67.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716849269.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.093 kcal (2) G-P(sol) polarization free energy of solvation -66.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds