Wall clock time and date at job start Tue Mar 31 2020 19:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46741 * 2 1 4 4 C 1.52996 * 109.46877 * 120.00282 * 2 1 3 5 5 C 1.50699 * 109.46906 * 240.00161 * 2 1 3 6 6 O 1.34250 * 126.52387 * 242.46781 * 5 2 1 7 7 C 1.34056 * 108.22862 * 180.02562 * 6 5 2 8 8 N 1.29931 * 109.24266 * 359.97438 * 7 6 5 9 9 C 1.36069 * 108.47496 * 359.73786 * 8 7 6 10 10 C 1.47424 * 126.44940 * 180.29951 * 9 8 7 11 11 O 1.21616 * 120.00193 * 174.59286 * 10 9 8 12 12 N 1.34779 * 119.99678 * 354.58982 * 10 9 8 13 13 C 1.47422 * 125.64895 * 359.69471 * 12 10 9 14 14 C 1.55131 * 104.72052 * 155.81396 * 13 12 10 15 15 C 1.55160 * 101.48624 * 37.29372 * 14 13 12 16 16 C 1.53002 * 110.87177 * 82.76526 * 15 14 13 17 17 C 1.52996 * 110.72173 * 205.96848 * 15 14 13 18 18 N 1.46494 * 109.47176 * 174.97649 * 17 15 14 19 19 C 1.36941 * 119.99963 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00372 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00263 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99390 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00429 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47254 * 59.99749 * 23 21 19 25 25 H 1.48494 * 109.47509 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46857 * 300.00111 * 23 21 19 27 27 C 1.47020 * 125.64422 * 179.97438 * 12 10 9 28 28 H 1.08997 * 109.46976 * 55.00387 * 1 2 3 29 29 H 1.09003 * 109.47057 * 174.99934 * 1 2 3 30 30 H 1.08999 * 109.47564 * 294.99794 * 1 2 3 31 31 H 1.09000 * 109.47271 * 65.14535 * 3 2 1 32 32 H 1.09000 * 109.46627 * 185.14005 * 3 2 1 33 33 H 1.08990 * 109.47594 * 305.14019 * 3 2 1 34 34 H 1.08995 * 109.47262 * 59.99893 * 4 2 1 35 35 H 1.09004 * 109.47037 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47295 * 299.99708 * 4 2 1 37 37 H 1.07996 * 125.37570 * 179.97438 * 7 6 5 38 38 H 1.09001 * 110.36696 * 274.73883 * 13 12 10 39 39 H 1.09000 * 110.36812 * 37.06672 * 13 12 10 40 40 H 1.08998 * 111.19074 * 279.19056 * 14 13 12 41 41 H 1.08998 * 110.94206 * 155.28548 * 14 13 12 42 42 H 1.09004 * 109.47009 * 304.93963 * 16 15 14 43 43 H 1.09007 * 109.46786 * 64.93764 * 16 15 14 44 44 H 1.09001 * 109.47110 * 184.93625 * 16 15 14 45 45 H 1.09001 * 109.47018 * 294.97868 * 17 15 14 46 46 H 1.09005 * 109.47173 * 54.97456 * 17 15 14 47 47 H 0.96991 * 120.00385 * 0.02562 * 18 17 15 48 48 H 0.97007 * 119.99157 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.88765 * 300.44215 * 27 12 10 50 50 H 1.09004 * 109.88379 * 61.61185 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0323 -0.7104 -1.2305 6 8 2.7688 -1.8324 -1.2606 7 6 3.0101 -2.1413 -2.5426 8 7 2.4509 -1.2540 -3.3095 9 6 1.8205 -0.3401 -2.5228 10 6 1.0550 0.8326 -2.9836 11 8 0.4548 1.5209 -2.1805 12 7 1.0204 1.1419 -4.2950 13 6 1.7040 0.4011 -5.3707 14 6 0.8919 0.7273 -6.6516 15 6 0.5252 2.2161 -6.4142 16 6 1.6770 3.1340 -6.8285 17 6 -0.7554 2.5847 -7.1659 18 7 -1.1419 3.9569 -6.8284 19 6 -2.2645 4.5087 -7.3857 20 1 -2.8647 3.9325 -8.0743 21 6 -2.6310 5.8088 -7.0656 22 7 -1.8993 6.5112 -6.2268 23 14 -4.1627 6.5613 -7.8253 24 1 -5.3499 5.7514 -7.4512 25 1 -4.3324 7.9493 -7.3255 26 1 -4.0232 6.5815 -9.3036 27 6 0.2994 2.2772 -4.8888 28 1 -0.3633 0.5894 -0.8418 29 1 -0.3633 -1.0238 -0.0896 30 1 -0.3634 0.4343 0.9314 31 1 1.7538 1.9291 0.9325 32 1 3.1260 1.4439 -0.0921 33 1 1.6034 1.9822 -0.8403 34 1 1.6766 -1.7489 1.2492 35 1 3.1300 -0.7209 1.2494 36 1 1.6767 -0.2075 2.1392 37 1 3.5794 -2.9932 -2.8840 38 1 2.7332 0.7451 -5.4735 39 1 1.6794 -0.6698 -5.1689 40 1 -0.0040 0.1100 -6.7180 41 1 1.5086 0.6143 -7.5432 42 1 2.5854 2.8361 -6.3049 43 1 1.8352 3.0555 -7.9041 44 1 1.4309 4.1644 -6.5717 45 1 -0.5809 2.5099 -8.2392 46 1 -1.5546 1.9012 -6.8791 47 1 -0.6023 4.4748 -6.2109 48 1 -2.1553 7.4198 -6.0034 49 1 -0.7650 2.1969 -4.6680 50 1 0.6925 3.2138 -4.4933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716879279.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:04 Heat of formation + Delta-G solvation = 6.166789 kcal Electronic energy + Delta-G solvation = -30361.870705 eV Core-core repulsion = 26391.517477 eV Total energy + Delta-G solvation = -3970.353227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.70646 -40.04207 -38.29221 -36.83151 -35.10164 -34.62605 -32.63007 -30.49079 -29.92761 -28.97259 -27.49370 -27.32463 -26.77126 -25.78476 -23.99844 -23.18301 -22.93944 -21.83161 -20.49188 -19.20691 -18.75471 -17.75451 -17.05791 -16.98472 -16.36976 -15.94797 -15.45752 -15.27672 -14.67010 -14.62504 -14.41828 -13.98925 -13.89007 -13.61991 -13.54175 -13.10843 -13.04077 -12.54679 -12.45357 -12.34308 -12.13987 -12.05649 -11.85797 -11.75388 -11.65642 -11.58375 -11.24165 -11.19712 -11.09363 -10.98150 -10.78828 -10.68327 -10.43638 -10.30216 -10.22628 -9.92548 -9.70864 -9.57408 -9.11919 -8.83471 -8.37186 -6.87946 -5.72145 -3.00705 0.95499 1.87527 2.30534 3.03551 3.26465 3.47319 3.51618 3.52690 3.81811 4.23780 4.44532 4.61369 4.69909 4.73005 4.79979 4.87459 4.96813 5.12136 5.29424 5.38115 5.45762 5.46736 5.48084 5.50096 5.62255 5.67618 5.68341 5.71815 5.77560 5.83587 5.88536 5.94667 5.97928 6.03685 6.11734 6.14700 6.20469 6.23433 6.31736 6.40663 6.42748 6.51031 6.63708 6.67574 6.78442 6.87892 7.23897 7.65186 7.73459 8.24825 8.46558 9.57831 10.15103 10.49898 11.50552 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.002883 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.048602 B = 9709.532909 C =10842.328909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.024 3.976 3 C -0.161 4.161 4 C -0.145 4.145 5 C 0.056 3.944 6 O -0.197 6.197 7 C 0.164 3.836 8 N -0.458 5.458 9 C -0.066 4.066 10 C 0.606 3.394 11 O -0.521 6.521 12 N -0.596 5.596 13 C 0.101 3.899 14 C -0.124 4.124 15 C -0.078 4.078 16 C -0.131 4.131 17 C 0.169 3.831 18 N -0.730 5.730 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.122 3.878 28 H 0.106 0.894 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.253 0.747 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.024 0.976 46 H 0.020 0.980 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.079 0.921 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.412 -19.490 10.408 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.023 3.977 3 C -0.217 4.217 4 C -0.202 4.202 5 C -0.001 4.001 6 O -0.083 6.083 7 C -0.064 4.064 8 N -0.187 5.187 9 C -0.186 4.186 10 C 0.395 3.605 11 O -0.400 6.400 12 N -0.327 5.327 13 C -0.021 4.021 14 C -0.163 4.163 15 C -0.079 4.079 16 C -0.188 4.188 17 C 0.041 3.959 18 N -0.375 5.375 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.214 1.214 27 C 0.001 3.999 28 H 0.124 0.876 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.268 0.732 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.038 0.962 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.097 0.903 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.973 -19.106 10.154 25.228 hybrid contribution -0.423 0.304 0.314 0.608 sum 12.550 -18.803 10.468 24.912 Atomic orbital electron populations 1.22281 0.91470 1.02526 1.05425 1.19241 0.96883 0.94394 0.87193 1.22268 1.00422 0.93655 1.05381 1.21933 1.01287 1.00393 0.96625 1.23853 0.93038 0.85600 0.97580 1.84363 1.54879 1.36476 1.32563 1.28051 1.01326 1.01084 0.75917 1.70812 1.10668 1.03341 1.33929 1.21397 1.07256 1.00160 0.89806 1.16305 0.80392 0.82600 0.81222 1.90585 1.45497 1.51865 1.52088 1.48296 1.49482 1.29530 1.05390 1.22603 0.95547 0.98302 0.85696 1.22931 1.00349 0.95891 0.97116 1.21834 0.97696 0.94709 0.93649 1.21747 0.95954 1.00165 1.00938 1.20638 0.91158 0.88232 0.95844 1.42362 1.30193 1.10024 1.54919 1.19166 1.01316 0.95988 1.20646 0.91302 1.24726 0.99141 0.97001 1.00008 1.69653 1.39904 1.10534 1.37996 0.86277 0.83061 0.78288 0.78597 1.21315 1.21735 1.21352 1.22139 0.97420 0.88157 0.92216 0.87607 0.93400 0.91490 0.91391 0.93367 0.87873 0.92281 0.92334 0.91350 0.73159 0.91762 0.88377 0.90540 0.89911 0.93552 0.92426 0.91220 0.95827 0.96188 0.78103 0.93482 0.90282 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 8.25 37.16 0.31 -1.55 16 2 C 0.02 0.26 0.75 -155.66 -0.12 0.14 16 3 C -0.16 -1.86 8.19 37.16 0.30 -1.55 16 4 C -0.15 -1.23 8.07 37.16 0.30 -0.93 16 5 C 0.06 0.67 5.73 -35.08 -0.20 0.47 16 6 O -0.20 -1.96 10.19 6.51 0.07 -1.89 16 7 C 0.16 1.35 13.19 51.96 0.69 2.03 16 8 N -0.46 -5.29 8.41 -11.48 -0.10 -5.39 16 9 C -0.07 -0.90 6.65 -83.02 -0.55 -1.45 16 10 C 0.61 9.63 7.54 -12.52 -0.09 9.54 16 11 O -0.52 -9.09 10.20 5.26 0.05 -9.04 16 12 N -0.60 -9.23 3.32 -171.64 -0.57 -9.81 16 13 C 0.10 1.30 5.92 -2.41 -0.01 1.28 16 14 C -0.12 -1.59 6.04 -24.46 -0.15 -1.74 16 15 C -0.08 -1.25 0.61 -152.67 -0.09 -1.34 16 16 C -0.13 -2.03 8.25 37.16 0.31 -1.72 16 17 C 0.17 3.36 5.07 -4.05 -0.02 3.34 16 18 N -0.73 -18.26 5.15 -59.91 -0.31 -18.57 16 19 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 23 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.12 2.13 5.47 -3.07 -0.02 2.11 16 28 H 0.11 1.54 4.65 -51.93 -0.24 1.29 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 1.49 4.55 -51.93 -0.24 1.25 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.25 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.06 0.79 7.71 -51.93 -0.40 0.39 16 39 H 0.10 1.21 6.01 -51.93 -0.31 0.90 16 40 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 41 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 42 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 1.26 7.11 -51.93 -0.37 0.89 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 47 H 0.38 10.11 6.37 -40.82 -0.26 9.85 16 48 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.08 1.57 7.82 -51.93 -0.41 1.16 16 50 H 0.07 1.37 7.84 -51.93 -0.41 0.96 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -32.53 387.62 -6.96 -39.49 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.05 Total: 8.08 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 0.40 Total: 1.28 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.25 Total: -61.37 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.12 Total: -10.93 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.53 -6.96 -39.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716879279.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.659 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds