Wall clock time and date at job start Tue Mar 31 2020 19:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46741 * 2 1 4 4 C 1.52996 * 109.46877 * 120.00282 * 2 1 3 5 5 C 1.50699 * 109.46906 * 240.00161 * 2 1 3 6 6 O 1.34250 * 126.52387 * 242.46781 * 5 2 1 7 7 C 1.34056 * 108.22862 * 180.02562 * 6 5 2 8 8 N 1.29931 * 109.24266 * 359.97438 * 7 6 5 9 9 C 1.36069 * 108.47496 * 359.73786 * 8 7 6 10 10 C 1.47424 * 126.44940 * 180.29951 * 9 8 7 11 11 O 1.21616 * 120.00193 * 174.59286 * 10 9 8 12 12 N 1.34779 * 119.99678 * 354.58982 * 10 9 8 13 13 C 1.47422 * 125.64895 * 359.69471 * 12 10 9 14 14 C 1.55131 * 104.72052 * 155.81396 * 13 12 10 15 15 C 1.55160 * 101.48624 * 37.29372 * 14 13 12 16 16 C 1.53002 * 110.87177 * 82.76526 * 15 14 13 17 17 C 1.52996 * 110.72173 * 205.96848 * 15 14 13 18 18 N 1.46494 * 109.47176 * 174.97649 * 17 15 14 19 19 C 1.36941 * 119.99963 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00372 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00263 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99390 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00429 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47254 * 59.99749 * 23 21 19 25 25 H 1.48494 * 109.47509 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46857 * 300.00111 * 23 21 19 27 27 C 1.47020 * 125.64422 * 179.97438 * 12 10 9 28 28 H 1.08997 * 109.46976 * 55.00387 * 1 2 3 29 29 H 1.09003 * 109.47057 * 174.99934 * 1 2 3 30 30 H 1.08999 * 109.47564 * 294.99794 * 1 2 3 31 31 H 1.09000 * 109.47271 * 65.14535 * 3 2 1 32 32 H 1.09000 * 109.46627 * 185.14005 * 3 2 1 33 33 H 1.08990 * 109.47594 * 305.14019 * 3 2 1 34 34 H 1.08995 * 109.47262 * 59.99893 * 4 2 1 35 35 H 1.09004 * 109.47037 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47295 * 299.99708 * 4 2 1 37 37 H 1.07996 * 125.37570 * 179.97438 * 7 6 5 38 38 H 1.09001 * 110.36696 * 274.73883 * 13 12 10 39 39 H 1.09000 * 110.36812 * 37.06672 * 13 12 10 40 40 H 1.08998 * 111.19074 * 279.19056 * 14 13 12 41 41 H 1.08998 * 110.94206 * 155.28548 * 14 13 12 42 42 H 1.09004 * 109.47009 * 304.93963 * 16 15 14 43 43 H 1.09007 * 109.46786 * 64.93764 * 16 15 14 44 44 H 1.09001 * 109.47110 * 184.93625 * 16 15 14 45 45 H 1.09001 * 109.47018 * 294.97868 * 17 15 14 46 46 H 1.09005 * 109.47173 * 54.97456 * 17 15 14 47 47 H 0.96991 * 120.00385 * 0.02562 * 18 17 15 48 48 H 0.97007 * 119.99157 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.88765 * 300.44215 * 27 12 10 50 50 H 1.09004 * 109.88379 * 61.61185 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0323 -0.7104 -1.2305 6 8 2.7688 -1.8324 -1.2606 7 6 3.0101 -2.1413 -2.5426 8 7 2.4509 -1.2540 -3.3095 9 6 1.8205 -0.3401 -2.5228 10 6 1.0550 0.8326 -2.9836 11 8 0.4548 1.5209 -2.1805 12 7 1.0204 1.1419 -4.2950 13 6 1.7040 0.4011 -5.3707 14 6 0.8919 0.7273 -6.6516 15 6 0.5252 2.2161 -6.4142 16 6 1.6770 3.1340 -6.8285 17 6 -0.7554 2.5847 -7.1659 18 7 -1.1419 3.9569 -6.8284 19 6 -2.2645 4.5087 -7.3857 20 1 -2.8647 3.9325 -8.0743 21 6 -2.6310 5.8088 -7.0656 22 7 -1.8993 6.5112 -6.2268 23 14 -4.1627 6.5613 -7.8253 24 1 -5.3499 5.7514 -7.4512 25 1 -4.3324 7.9493 -7.3255 26 1 -4.0232 6.5815 -9.3036 27 6 0.2994 2.2772 -4.8888 28 1 -0.3633 0.5894 -0.8418 29 1 -0.3633 -1.0238 -0.0896 30 1 -0.3634 0.4343 0.9314 31 1 1.7538 1.9291 0.9325 32 1 3.1260 1.4439 -0.0921 33 1 1.6034 1.9822 -0.8403 34 1 1.6766 -1.7489 1.2492 35 1 3.1300 -0.7209 1.2494 36 1 1.6767 -0.2075 2.1392 37 1 3.5794 -2.9932 -2.8840 38 1 2.7332 0.7451 -5.4735 39 1 1.6794 -0.6698 -5.1689 40 1 -0.0040 0.1100 -6.7180 41 1 1.5086 0.6143 -7.5432 42 1 2.5854 2.8361 -6.3049 43 1 1.8352 3.0555 -7.9041 44 1 1.4309 4.1644 -6.5717 45 1 -0.5809 2.5099 -8.2392 46 1 -1.5546 1.9012 -6.8791 47 1 -0.6023 4.4748 -6.2109 48 1 -2.1553 7.4198 -6.0034 49 1 -0.7650 2.1969 -4.6680 50 1 0.6925 3.2138 -4.4933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716879279.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:03 Heat of formation + Delta-G solvation = -15.691611 kcal Electronic energy + Delta-G solvation = -30362.818556 eV Core-core repulsion = 26391.517477 eV Total energy + Delta-G solvation = -3971.301079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.51692 -41.27165 -39.50952 -37.77292 -36.46009 -35.84949 -34.28962 -32.27351 -30.82016 -30.29307 -28.26242 -28.24990 -28.03934 -27.46323 -25.48607 -24.31174 -23.93603 -23.19777 -21.47022 -20.17161 -20.12092 -19.28436 -18.48461 -17.83700 -17.58530 -17.09702 -16.64490 -16.44348 -16.11134 -15.70925 -15.64831 -15.28916 -15.21491 -14.94943 -14.79395 -14.52574 -14.40352 -13.82376 -13.58007 -13.38950 -13.22506 -13.13579 -13.07577 -12.92198 -12.85183 -12.69449 -12.62241 -12.57611 -12.21016 -12.15961 -12.10453 -12.02401 -12.01555 -11.76786 -11.57618 -11.46236 -11.19821 -10.93476 -10.86686 -10.03184 -9.59036 -8.97603 -7.93190 -5.21663 0.03688 1.06689 1.46784 1.49593 1.50295 1.56172 1.91703 2.17615 2.56823 3.04873 3.36863 3.40386 3.46015 3.62550 3.70401 3.81639 3.90476 3.93403 4.05145 4.16188 4.30362 4.38665 4.40001 4.47292 4.52269 4.68288 4.70746 4.73836 4.77477 4.81252 4.83181 4.91024 4.93635 4.94711 4.97707 4.99678 5.06703 5.09618 5.15892 5.19885 5.21631 5.28813 5.37570 5.43986 5.47482 5.50737 5.58063 6.28396 6.36473 6.53855 7.06577 7.35100 8.11285 8.34377 9.30169 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.002883 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.048602 B = 9709.532909 C =10842.328909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.021 3.979 3 C -0.157 4.157 4 C -0.138 4.138 5 C 0.055 3.945 6 O -0.193 6.193 7 C 0.194 3.806 8 N -0.485 5.485 9 C -0.088 4.088 10 C 0.595 3.405 11 O -0.547 6.547 12 N -0.601 5.601 13 C 0.107 3.893 14 C -0.112 4.112 15 C -0.070 4.070 16 C -0.122 4.122 17 C 0.168 3.832 18 N -0.742 5.742 19 C -0.245 4.245 20 H 0.076 0.924 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.973 3.027 24 H -0.280 1.280 25 H -0.297 1.297 26 H -0.275 1.275 27 C 0.132 3.868 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.307 0.693 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.015 0.985 47 H 0.374 0.626 48 H 0.250 0.750 49 H 0.044 0.956 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.950 -22.528 10.038 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 C -0.214 4.214 4 C -0.195 4.195 5 C -0.003 4.003 6 O -0.079 6.079 7 C -0.034 4.034 8 N -0.214 5.214 9 C -0.207 4.207 10 C 0.385 3.615 11 O -0.428 6.428 12 N -0.332 5.332 13 C -0.015 4.015 14 C -0.150 4.150 15 C -0.071 4.071 16 C -0.180 4.180 17 C 0.042 3.958 18 N -0.385 5.385 19 C -0.376 4.376 20 H 0.094 0.906 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.802 3.198 24 H -0.206 1.206 25 H -0.223 1.223 26 H -0.201 1.201 27 C 0.009 3.991 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.322 0.678 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.132 0.868 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.033 0.967 47 H 0.207 0.793 48 H 0.059 0.941 49 H 0.062 0.938 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.516 -22.193 9.746 28.252 hybrid contribution -0.862 1.134 0.457 1.496 sum 13.653 -21.059 10.203 27.092 Atomic orbital electron populations 1.22192 0.92364 1.02220 1.04601 1.19268 0.96204 0.94139 0.88341 1.22182 1.00464 0.94188 1.04570 1.21884 1.01624 1.00459 0.95513 1.23912 0.93041 0.86101 0.97237 1.84401 1.54478 1.35553 1.33489 1.29303 0.98767 1.00615 0.74741 1.70746 1.12082 1.04060 1.34470 1.21083 1.08471 1.00216 0.90895 1.16810 0.80379 0.83283 0.81034 1.90599 1.46481 1.52928 1.52770 1.48372 1.49608 1.29146 1.06071 1.22721 0.95629 0.98607 0.84512 1.22940 1.00997 0.92610 0.98433 1.21715 0.96159 0.97458 0.91774 1.21658 0.96339 0.97958 1.02019 1.20787 0.92799 0.85484 0.96745 1.42564 1.29503 1.11888 1.54550 1.19605 1.01887 0.96180 1.19978 0.90608 1.25564 1.02395 0.97760 1.01102 1.69827 1.41791 1.10539 1.39876 0.85215 0.79521 0.76909 0.78130 1.20632 1.22293 1.20141 1.21805 0.95484 0.88167 0.93598 0.90883 0.92877 0.90253 0.90171 0.92856 0.91113 0.91622 0.91681 0.90136 0.67829 0.90716 0.87264 0.90348 0.86814 0.91526 0.90967 0.94611 0.94752 0.96668 0.79318 0.94108 0.93754 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 8.25 71.98 0.59 -3.10 16 2 C 0.02 0.45 0.75 -52.93 -0.04 0.41 16 3 C -0.16 -3.70 8.19 71.98 0.59 -3.11 16 4 C -0.14 -2.04 8.07 71.98 0.58 -1.46 16 5 C 0.05 1.24 5.73 25.19 0.14 1.39 16 6 O -0.19 -3.26 10.19 0.39 0.00 -3.26 16 7 C 0.19 2.43 13.19 130.52 1.72 4.15 16 8 N -0.49 -10.06 8.41 -305.14 -2.57 -12.63 16 9 C -0.09 -2.35 6.65 40.41 0.27 -2.08 16 10 C 0.59 19.72 7.54 86.66 0.65 20.38 16 11 O -0.55 -20.64 10.20 -4.08 -0.04 -20.69 16 12 N -0.60 -19.14 3.32 -815.20 -2.71 -21.85 16 13 C 0.11 2.57 5.92 86.93 0.51 3.09 16 14 C -0.11 -2.63 6.04 32.06 0.19 -2.44 16 15 C -0.07 -2.26 0.61 -50.99 -0.03 -2.29 16 16 C -0.12 -3.77 8.25 71.98 0.59 -3.18 16 17 C 0.17 6.75 5.07 86.38 0.44 7.19 16 18 N -0.74 -38.36 5.15 -343.46 -1.77 -40.13 16 19 C -0.24 -13.94 9.99 84.03 0.84 -13.10 16 20 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 21 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 22 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 23 Si 0.97 47.26 29.55 68.60 2.03 49.28 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 25 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 27 C 0.13 4.91 5.47 86.73 0.47 5.38 16 28 H 0.07 2.27 4.65 -2.39 -0.01 2.26 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 2.19 4.55 -2.39 -0.01 2.18 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.31 -0.15 8.06 -2.91 -0.02 -0.18 16 38 H 0.07 1.67 7.71 -2.39 -0.02 1.65 16 39 H 0.11 2.46 6.01 -2.39 -0.01 2.44 16 40 H 0.08 1.85 8.04 -2.39 -0.02 1.83 16 41 H 0.11 2.04 8.04 -2.39 -0.02 2.02 16 42 H 0.07 1.76 7.44 -2.39 -0.02 1.75 16 43 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.03 1.34 7.11 -2.39 -0.02 1.32 16 45 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.02 0.63 8.13 -2.38 -0.02 0.62 16 47 H 0.37 20.76 6.37 -92.71 -0.59 20.17 16 48 H 0.25 15.32 8.31 -92.70 -0.77 14.55 16 49 H 0.04 1.91 7.82 -2.39 -0.02 1.89 16 50 H 0.05 1.93 7.84 -2.39 -0.02 1.91 16 Total: -1.00 -74.73 387.62 3.59 -71.14 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.35 Total: 31.61 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 8.00 Total: 7.24 kcal Atomic # 7 Polarization: -128.56 SS G_CDS: -6.76 Total: -135.32 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.04 Total: -23.94 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.28 kcal Total: -74.73 3.59 -71.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716879279.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.450 kcal (2) G-P(sol) polarization free energy of solvation -74.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds