Wall clock time and date at job start Tue Mar 31 2020 19:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39840 * 126.45796 * 2 1 4 4 C 1.35455 * 107.86492 * 180.26123 * 3 2 1 5 5 N 1.35536 * 108.86908 * 359.74234 * 4 3 2 6 6 H 0.97003 * 125.67273 * 180.02562 * 5 4 3 7 7 C 1.37652 * 108.64919 * 359.97438 * 5 4 3 8 8 C 1.46670 * 126.23502 * 179.97438 * 7 5 4 9 9 O 1.21697 * 119.99954 * 144.52740 * 8 7 5 10 10 N 1.34780 * 120.00223 * 324.53340 * 8 7 5 11 11 C 1.46922 * 120.62884 * 174.40270 * 10 8 7 12 12 C 1.53198 * 108.89217 * 126.29850 * 11 10 8 13 13 C 1.53349 * 109.14963 * 54.57379 * 12 11 10 14 14 O 1.42905 * 109.41345 * 178.67908 * 13 12 11 15 15 C 1.42907 * 113.99631 * 270.12195 * 14 13 12 16 16 C 1.52999 * 109.46777 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.46878 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47084 * 179.97438 * 17 16 15 19 19 C 1.36938 * 119.99788 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00190 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99892 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99766 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99968 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47380 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47005 * 120.00218 * 23 21 19 26 26 H 1.48505 * 109.47040 * 240.00235 * 23 21 19 27 27 C 1.53040 * 109.60476 * 298.71021 * 13 12 11 28 28 C 1.46924 * 120.62822 * 354.37514 * 10 8 7 29 29 H 1.09008 * 109.46947 * 270.18047 * 1 2 3 30 30 H 1.08995 * 109.47147 * 30.18037 * 1 2 3 31 31 H 1.09000 * 109.46867 * 150.18620 * 1 2 3 32 32 H 1.07996 * 126.06931 * 0.02562 * 3 2 1 33 33 H 1.07999 * 125.56788 * 179.71368 * 4 3 2 34 34 H 1.09006 * 109.58467 * 246.14816 * 11 10 8 35 35 H 1.08998 * 109.59040 * 6.43930 * 11 10 8 36 36 H 1.08998 * 109.49624 * 174.65750 * 12 11 10 37 37 H 1.09004 * 109.49153 * 294.74851 * 12 11 10 38 38 H 1.08991 * 109.42577 * 58.75173 * 13 12 11 39 39 H 1.08991 * 109.46983 * 300.00425 * 15 14 13 40 40 H 1.08999 * 109.46668 * 60.00486 * 15 14 13 41 41 H 1.09001 * 109.46863 * 299.99972 * 16 15 14 42 42 H 1.08994 * 109.47191 * 59.99883 * 16 15 14 43 43 H 1.09005 * 109.47078 * 299.99925 * 17 16 15 44 44 H 1.09001 * 109.47468 * 60.00028 * 17 16 15 45 45 H 0.97002 * 119.99998 * 0.02562 * 18 17 16 46 46 H 0.97004 * 119.99596 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.50456 * 301.42142 * 27 13 12 48 48 H 1.09006 * 109.52074 * 181.34497 * 27 13 12 49 49 H 1.09005 * 109.58977 * 353.41959 * 28 10 8 50 50 H 1.09000 * 109.58513 * 113.70477 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6284 -0.6625 -0.0038 6 1 4.4191 -1.2244 -0.0066 7 6 2.3263 -1.1090 0.0041 8 6 1.8899 -2.5092 0.0082 9 8 0.8929 -2.8341 0.6258 10 7 2.5931 -3.4363 -0.6720 11 6 2.2412 -4.8597 -0.5791 12 6 2.0415 -5.4147 -1.9929 13 6 3.2952 -5.1272 -2.8279 14 8 3.1272 -5.6698 -4.1393 15 6 3.5806 -7.0184 -4.2727 16 6 3.3536 -7.4929 -5.7095 17 6 3.8384 -8.9370 -5.8522 18 7 3.6205 -9.3915 -7.2278 19 6 3.9801 -10.6609 -7.5944 20 1 4.4240 -11.3271 -6.8695 21 6 3.7732 -11.0919 -8.8977 22 7 3.2318 -10.2801 -9.7810 23 14 4.2631 -12.8237 -9.3977 24 1 4.8453 -13.5305 -8.2286 25 1 3.0641 -13.5594 -9.8734 26 1 5.2688 -12.7583 -10.4883 27 6 3.5116 -3.6154 -2.9256 28 6 3.7257 -3.0425 -1.5210 29 1 -0.3633 0.0032 1.0277 30 1 -0.3633 0.8883 -0.5166 31 1 -0.3633 -0.8917 -0.5109 32 1 2.0137 2.1549 0.0004 33 1 4.4973 1.3252 -0.0118 34 1 3.0456 -5.4033 -0.0835 35 1 1.3190 -4.9717 -0.0089 36 1 1.8734 -6.4904 -1.9411 37 1 1.1792 -4.9331 -2.4542 38 1 4.1609 -5.5880 -2.3524 39 1 4.6435 -7.0693 -4.0372 40 1 3.0253 -7.6579 -3.5865 41 1 2.2906 -7.4419 -5.9453 42 1 3.9090 -6.8533 -6.3953 43 1 4.9014 -8.9884 -5.6162 44 1 3.2826 -9.5764 -5.1663 45 1 3.2222 -8.7930 -7.8790 46 1 3.0869 -10.5814 -10.6916 47 1 2.6357 -3.1508 -3.3784 48 1 4.3893 -3.4119 -3.5391 49 1 3.7816 -1.9552 -1.5745 50 1 4.6514 -3.4357 -1.1008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717518555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:16 Heat of formation + Delta-G solvation = -27.946397 kcal Electronic energy + Delta-G solvation = -28267.341946 eV Core-core repulsion = 24295.509460 eV Total energy + Delta-G solvation = -3971.832486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.94194 -40.07975 -38.60337 -36.84426 -35.15107 -33.19930 -32.69145 -31.98497 -31.62859 -29.92888 -29.52615 -27.38702 -25.63227 -24.71398 -23.91617 -22.54567 -22.35494 -21.33125 -20.96687 -20.42639 -19.25986 -18.35049 -17.14753 -17.01599 -16.54304 -16.02939 -15.89150 -15.71108 -14.91718 -14.61550 -14.57897 -14.51736 -14.20043 -14.02322 -13.79326 -13.45486 -13.30292 -13.25210 -13.09474 -12.91764 -12.79142 -12.65056 -12.55260 -12.26177 -11.91071 -11.68174 -11.49976 -11.26877 -11.02152 -10.88645 -10.73286 -10.64780 -10.55317 -10.38836 -10.02934 -9.72201 -9.51936 -9.21706 -9.15944 -8.88536 -8.54571 -6.93177 -5.76766 -3.06002 1.13942 2.26355 2.41365 2.56755 2.98649 3.43154 3.47028 3.50637 3.52109 4.08264 4.22651 4.48496 4.54147 4.59981 4.60350 4.73006 4.76334 4.78509 4.90749 4.97601 5.01537 5.07377 5.23916 5.30199 5.36686 5.37370 5.47646 5.52161 5.54343 5.56470 5.58464 5.60261 5.74657 5.77665 5.88905 5.94625 5.99438 6.03630 6.08596 6.26314 6.34617 6.35426 6.53640 6.81420 6.85445 6.87026 6.96322 7.22829 7.69612 7.71405 8.41959 9.52986 10.10893 10.45678 11.46234 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030932 B = 0.001587 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.993735 B =17643.929067 C =17823.251656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.081 4.081 3 C -0.207 4.207 4 C 0.020 3.980 5 N -0.542 5.542 6 H 0.418 0.582 7 C -0.056 4.056 8 C 0.592 3.408 9 O -0.523 6.523 10 N -0.613 5.613 11 C 0.115 3.885 12 C -0.157 4.157 13 C 0.091 3.909 14 O -0.379 6.379 15 C 0.068 3.932 16 C -0.125 4.125 17 C 0.157 3.843 18 N -0.733 5.733 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.130 4.130 28 C 0.099 3.901 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.172 0.828 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.008 24.536 24.001 34.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.232 4.232 4 C -0.115 4.115 5 N -0.140 5.140 6 H 0.257 0.743 7 C -0.168 4.168 8 C 0.381 3.619 9 O -0.399 6.399 10 N -0.347 5.347 11 C -0.007 4.007 12 C -0.196 4.196 13 C 0.033 3.967 14 O -0.299 6.299 15 C -0.009 4.009 16 C -0.163 4.163 17 C 0.029 3.971 18 N -0.377 5.377 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.168 4.168 28 C -0.024 4.024 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.189 0.811 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.104 0.896 49 H 0.110 0.890 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.561 24.135 24.202 34.215 hybrid contribution 0.823 -1.136 -0.483 1.483 sum 2.384 22.999 23.719 33.124 Atomic orbital electron populations 1.20238 0.89361 1.02269 1.02369 1.19931 0.95804 0.90814 1.02378 1.20804 0.91782 0.98805 1.11773 1.22033 0.99644 0.82934 1.06855 1.42269 1.07040 1.07317 1.57407 0.74332 1.20083 0.83958 0.93358 1.19373 1.17157 0.82904 0.83075 0.78813 1.90839 1.25109 1.80167 1.43771 1.48103 1.32436 1.07447 1.46716 1.21621 1.02560 0.79191 0.97315 1.22509 0.99831 1.02266 0.94986 1.22024 0.96502 0.93659 0.84509 1.87951 1.84384 1.28662 1.28857 1.22539 0.97793 0.82094 0.98445 1.21669 1.02762 0.97696 0.94124 1.20511 0.97033 0.90805 0.88754 1.42348 1.75150 1.14153 1.06097 1.19287 1.33527 0.89870 0.94529 0.91077 1.24771 1.01758 0.98337 0.96226 1.69681 1.49538 1.35224 1.03679 0.86092 0.77671 0.84119 0.78154 1.20549 1.21819 1.21828 1.21944 1.04128 0.94822 0.95952 1.21986 0.88801 1.01073 0.90553 0.91138 0.91677 0.91617 0.83907 0.81110 0.91162 0.88318 0.89969 0.90377 0.92092 0.93395 0.93372 0.91157 0.91190 0.96371 0.96334 0.78175 0.93521 0.90259 0.89601 0.89043 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.78 36.01 0.35 -0.39 16 2 C -0.08 -0.75 6.20 -104.16 -0.65 -1.39 16 3 C -0.21 -1.45 10.76 -39.98 -0.43 -1.88 16 4 C 0.02 0.10 11.89 -16.91 -0.20 -0.10 16 5 N -0.54 -3.10 4.65 -9.39 -0.04 -3.14 16 6 H 0.42 1.32 7.44 -40.82 -0.30 1.02 16 7 C -0.06 -0.51 6.03 -81.98 -0.49 -1.00 16 8 C 0.59 6.34 7.38 -12.86 -0.09 6.25 16 9 O -0.52 -7.30 15.54 5.19 0.08 -7.22 16 10 N -0.61 -5.21 2.97 -174.31 -0.52 -5.73 16 11 C 0.12 0.97 6.43 -3.71 -0.02 0.94 16 12 C -0.16 -1.46 5.72 -26.45 -0.15 -1.61 16 13 C 0.09 0.88 2.58 -26.53 -0.07 0.81 16 14 O -0.38 -5.00 9.99 -35.23 -0.35 -5.35 16 15 C 0.07 0.91 5.75 37.16 0.21 1.12 16 16 C -0.12 -2.11 5.70 -26.73 -0.15 -2.26 16 17 C 0.16 3.20 6.26 -4.04 -0.03 3.17 16 18 N -0.73 -19.16 5.60 -59.91 -0.34 -19.50 16 19 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 23 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C -0.13 -1.04 5.73 -26.61 -0.15 -1.19 16 28 C 0.10 0.60 5.46 -3.71 -0.02 0.58 16 29 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.66 7.57 -51.93 -0.39 0.27 16 32 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.17 0.30 8.06 -52.49 -0.42 -0.12 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.95 6.99 -51.93 -0.36 0.59 16 36 H 0.08 0.74 7.85 -51.93 -0.41 0.33 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.51 7.79 -51.93 -0.40 0.11 16 39 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 40 H 0.05 0.60 7.85 -51.93 -0.41 0.19 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.38 10.56 7.67 -40.82 -0.31 10.24 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.09 0.48 4.82 -51.93 -0.25 0.23 16 50 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 401.72 15.07 6.05 6.05 Total: -1.00 -35.23 401.72 -9.86 -45.09 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -8.30 Total: 4.70 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.14 Total: -4.52 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.17 Total: -56.32 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.27 Total: -12.57 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.23 -9.86 -45.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717518555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.146 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds