Wall clock time and date at job start Tue Mar 31 2020 19:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39840 * 126.45796 * 2 1 4 4 C 1.35455 * 107.86492 * 180.26123 * 3 2 1 5 5 N 1.35536 * 108.86908 * 359.74234 * 4 3 2 6 6 H 0.97003 * 125.67273 * 180.02562 * 5 4 3 7 7 C 1.37652 * 108.64919 * 359.97438 * 5 4 3 8 8 C 1.46670 * 126.23502 * 179.97438 * 7 5 4 9 9 O 1.21697 * 119.99954 * 144.52740 * 8 7 5 10 10 N 1.34780 * 120.00223 * 324.53340 * 8 7 5 11 11 C 1.46922 * 120.62884 * 174.40270 * 10 8 7 12 12 C 1.53198 * 108.89217 * 126.29850 * 11 10 8 13 13 C 1.53349 * 109.14963 * 54.57379 * 12 11 10 14 14 O 1.42905 * 109.41345 * 178.67908 * 13 12 11 15 15 C 1.42907 * 113.99631 * 270.12195 * 14 13 12 16 16 C 1.52999 * 109.46777 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.46878 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47084 * 179.97438 * 17 16 15 19 19 C 1.36938 * 119.99788 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00190 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99892 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99766 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99968 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47380 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47005 * 120.00218 * 23 21 19 26 26 H 1.48505 * 109.47040 * 240.00235 * 23 21 19 27 27 C 1.53040 * 109.60476 * 298.71021 * 13 12 11 28 28 C 1.46924 * 120.62822 * 354.37514 * 10 8 7 29 29 H 1.09008 * 109.46947 * 270.18047 * 1 2 3 30 30 H 1.08995 * 109.47147 * 30.18037 * 1 2 3 31 31 H 1.09000 * 109.46867 * 150.18620 * 1 2 3 32 32 H 1.07996 * 126.06931 * 0.02562 * 3 2 1 33 33 H 1.07999 * 125.56788 * 179.71368 * 4 3 2 34 34 H 1.09006 * 109.58467 * 246.14816 * 11 10 8 35 35 H 1.08998 * 109.59040 * 6.43930 * 11 10 8 36 36 H 1.08998 * 109.49624 * 174.65750 * 12 11 10 37 37 H 1.09004 * 109.49153 * 294.74851 * 12 11 10 38 38 H 1.08991 * 109.42577 * 58.75173 * 13 12 11 39 39 H 1.08991 * 109.46983 * 300.00425 * 15 14 13 40 40 H 1.08999 * 109.46668 * 60.00486 * 15 14 13 41 41 H 1.09001 * 109.46863 * 299.99972 * 16 15 14 42 42 H 1.08994 * 109.47191 * 59.99883 * 16 15 14 43 43 H 1.09005 * 109.47078 * 299.99925 * 17 16 15 44 44 H 1.09001 * 109.47468 * 60.00028 * 17 16 15 45 45 H 0.97002 * 119.99998 * 0.02562 * 18 17 16 46 46 H 0.97004 * 119.99596 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.50456 * 301.42142 * 27 13 12 48 48 H 1.09006 * 109.52074 * 181.34497 * 27 13 12 49 49 H 1.09005 * 109.58977 * 353.41959 * 28 10 8 50 50 H 1.09000 * 109.58513 * 113.70477 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6284 -0.6625 -0.0038 6 1 4.4191 -1.2244 -0.0066 7 6 2.3263 -1.1090 0.0041 8 6 1.8899 -2.5092 0.0082 9 8 0.8929 -2.8341 0.6258 10 7 2.5931 -3.4363 -0.6720 11 6 2.2412 -4.8597 -0.5791 12 6 2.0415 -5.4147 -1.9929 13 6 3.2952 -5.1272 -2.8279 14 8 3.1272 -5.6698 -4.1393 15 6 3.5806 -7.0184 -4.2727 16 6 3.3536 -7.4929 -5.7095 17 6 3.8384 -8.9370 -5.8522 18 7 3.6205 -9.3915 -7.2278 19 6 3.9801 -10.6609 -7.5944 20 1 4.4240 -11.3271 -6.8695 21 6 3.7732 -11.0919 -8.8977 22 7 3.2318 -10.2801 -9.7810 23 14 4.2631 -12.8237 -9.3977 24 1 4.8453 -13.5305 -8.2286 25 1 3.0641 -13.5594 -9.8734 26 1 5.2688 -12.7583 -10.4883 27 6 3.5116 -3.6154 -2.9256 28 6 3.7257 -3.0425 -1.5210 29 1 -0.3633 0.0032 1.0277 30 1 -0.3633 0.8883 -0.5166 31 1 -0.3633 -0.8917 -0.5109 32 1 2.0137 2.1549 0.0004 33 1 4.4973 1.3252 -0.0118 34 1 3.0456 -5.4033 -0.0835 35 1 1.3190 -4.9717 -0.0089 36 1 1.8734 -6.4904 -1.9411 37 1 1.1792 -4.9331 -2.4542 38 1 4.1609 -5.5880 -2.3524 39 1 4.6435 -7.0693 -4.0372 40 1 3.0253 -7.6579 -3.5865 41 1 2.2906 -7.4419 -5.9453 42 1 3.9090 -6.8533 -6.3953 43 1 4.9014 -8.9884 -5.6162 44 1 3.2826 -9.5764 -5.1663 45 1 3.2222 -8.7930 -7.8790 46 1 3.0869 -10.5814 -10.6916 47 1 2.6357 -3.1508 -3.3784 48 1 4.3893 -3.4119 -3.5391 49 1 3.7816 -1.9552 -1.5745 50 1 4.6514 -3.4357 -1.1008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717518555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:15 Heat of formation + Delta-G solvation = -51.127375 kcal Electronic energy + Delta-G solvation = -28268.347149 eV Core-core repulsion = 24295.509460 eV Total energy + Delta-G solvation = -3972.837689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.50142 -40.77017 -39.49648 -37.79527 -36.84287 -34.36641 -33.66793 -33.02539 -32.43388 -31.29669 -30.40554 -28.05875 -27.03218 -25.76297 -24.69212 -24.12228 -23.06823 -22.42107 -21.81952 -21.16331 -19.84582 -19.18935 -18.92785 -17.95615 -17.41461 -16.89305 -16.64943 -16.58690 -16.46470 -15.77304 -15.49679 -15.27510 -15.16827 -15.05522 -14.86204 -14.74826 -14.44992 -14.08677 -13.97207 -13.73485 -13.68944 -13.37086 -13.31568 -13.15424 -12.92456 -12.88944 -12.53573 -12.48725 -12.42075 -12.33411 -12.13160 -12.03665 -11.79804 -11.72408 -11.58342 -11.18807 -10.97051 -10.44681 -9.92126 -9.67732 -9.09841 -9.04230 -7.97518 -5.27812 0.51551 1.47063 1.48594 1.58818 1.68864 1.79627 2.02258 2.37754 2.52079 2.66809 3.36372 3.47660 3.62114 3.77769 3.86849 3.96204 4.06407 4.08442 4.18346 4.19067 4.25138 4.26192 4.33098 4.36517 4.40921 4.49778 4.54664 4.66744 4.67590 4.73892 4.77347 4.80065 4.81772 4.84885 4.88241 5.01891 5.07461 5.12365 5.16570 5.30948 5.31567 5.37368 5.40252 5.47669 5.79736 5.96280 6.22736 6.23930 6.30808 6.58124 6.97163 7.30304 8.05482 8.28440 9.26557 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030932 B = 0.001587 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.993735 B =17643.929067 C =17823.251656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.105 4.105 3 C -0.228 4.228 4 C 0.045 3.955 5 N -0.529 5.529 6 H 0.431 0.569 7 C -0.082 4.082 8 C 0.586 3.414 9 O -0.570 6.570 10 N -0.610 5.610 11 C 0.117 3.883 12 C -0.152 4.152 13 C 0.087 3.913 14 O -0.401 6.401 15 C 0.077 3.923 16 C -0.114 4.114 17 C 0.155 3.845 18 N -0.750 5.750 19 C -0.249 4.249 20 H 0.080 0.920 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.979 3.021 24 H -0.263 1.263 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.127 4.127 28 C 0.102 3.898 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.157 0.843 33 H 0.214 0.786 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.025 0.975 45 H 0.373 0.627 46 H 0.252 0.748 47 H 0.055 0.945 48 H 0.099 0.901 49 H 0.102 0.898 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.903 25.097 25.385 36.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C -0.251 4.251 4 C -0.091 4.091 5 N -0.128 5.128 6 H 0.273 0.727 7 C -0.194 4.194 8 C 0.377 3.623 9 O -0.449 6.449 10 N -0.342 5.342 11 C -0.005 4.005 12 C -0.191 4.191 13 C 0.029 3.971 14 O -0.321 6.321 15 C 0.000 4.000 16 C -0.152 4.152 17 C 0.029 3.971 18 N -0.393 5.393 19 C -0.381 4.381 20 H 0.098 0.902 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.807 3.193 24 H -0.188 1.188 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.165 4.165 28 C -0.020 4.020 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.175 0.825 33 H 0.231 0.769 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.043 0.957 45 H 0.204 0.796 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.117 0.883 49 H 0.120 0.880 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.506 24.686 25.619 35.861 hybrid contribution -0.073 -1.217 -0.873 1.499 sum 4.433 23.469 24.746 34.392 Atomic orbital electron populations 1.20189 0.90067 1.01847 1.01911 1.20214 0.95992 0.92138 1.03075 1.21076 0.92375 0.98936 1.12749 1.22689 1.00310 0.82708 1.03373 1.42243 1.06279 1.07855 1.56448 0.72701 1.19874 0.85564 0.92409 1.21589 1.17475 0.82407 0.84006 0.78456 1.90802 1.27152 1.81018 1.45977 1.48187 1.32645 1.07141 1.46265 1.21606 1.02782 0.79544 0.96536 1.22439 0.99035 1.02211 0.95383 1.22261 0.97149 0.94602 0.83047 1.87921 1.84705 1.28364 1.31085 1.22359 0.99129 0.82632 0.95837 1.21482 1.01407 0.95555 0.96757 1.20671 0.97671 0.92808 0.85951 1.42617 1.75078 1.13497 1.08126 1.19732 1.32581 0.90933 0.94838 0.90231 1.25670 1.02470 1.02533 0.96412 1.69844 1.51268 1.37254 1.03836 0.84995 0.77010 0.79272 0.77986 1.18756 1.22011 1.21857 1.21931 1.03685 0.93598 0.97305 1.22173 0.88981 1.01843 0.89016 0.91684 0.90107 0.93899 0.82518 0.76947 0.88562 0.90188 0.89681 0.92916 0.89706 0.91473 0.92268 0.92635 0.92095 0.95321 0.95693 0.79557 0.93927 0.92579 0.88278 0.88040 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 9.78 71.24 0.70 -0.86 16 2 C -0.11 -1.94 6.20 -19.56 -0.12 -2.06 16 3 C -0.23 -2.78 10.76 22.01 0.24 -2.54 16 4 C 0.05 0.31 11.89 83.48 0.99 1.30 16 5 N -0.53 -4.64 4.65 -183.62 -0.85 -5.49 16 6 H 0.43 1.19 7.44 -92.71 -0.69 0.50 16 7 C -0.08 -1.45 6.03 40.35 0.24 -1.21 16 8 C 0.59 12.83 7.38 86.44 0.64 13.47 16 9 O -0.57 -17.02 15.54 -4.34 -0.07 -17.09 16 10 N -0.61 -9.84 2.97 -823.60 -2.45 -12.29 16 11 C 0.12 1.90 6.43 86.37 0.56 2.45 16 12 C -0.15 -2.76 5.72 30.78 0.18 -2.58 16 13 C 0.09 1.50 2.58 30.72 0.08 1.58 16 14 O -0.40 -10.04 9.99 -148.98 -1.49 -11.53 16 15 C 0.08 1.91 5.75 71.98 0.41 2.32 16 16 C -0.11 -3.79 5.70 30.59 0.17 -3.61 16 17 C 0.16 6.19 6.26 86.38 0.54 6.74 16 18 N -0.75 -39.36 5.60 -343.45 -1.92 -41.28 16 19 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 22 N -0.97 -60.60 13.06 21.65 0.28 -60.32 16 23 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 24 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 C -0.13 -1.80 5.73 30.67 0.18 -1.62 16 28 C 0.10 0.97 5.46 86.36 0.47 1.44 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 0.97 7.57 -2.39 -0.02 0.95 16 32 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 33 H 0.21 -0.39 8.06 -2.91 -0.02 -0.41 16 34 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.08 1.62 6.99 -2.39 -0.02 1.61 16 36 H 0.08 1.47 7.85 -2.39 -0.02 1.45 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.10 7.79 -2.39 -0.02 1.08 16 39 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 40 H 0.06 1.34 7.85 -2.39 -0.02 1.32 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.37 20.92 7.67 -92.71 -0.71 20.21 16 46 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 47 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 49 H 0.10 0.79 4.82 -2.38 -0.01 0.78 16 50 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -78.87 401.72 1.65 -77.21 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.46 Total: 25.04 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 6.58 Total: -2.65 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -4.94 Total: -119.38 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -1.56 Total: -28.62 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -78.87 1.65 -77.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717518555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.087 kcal (2) G-P(sol) polarization free energy of solvation -78.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds