Wall clock time and date at job start Tue Mar 31 2020 19:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38089 * 119.58405 * 2 1 4 4 C 1.38783 * 119.28342 * 180.25224 * 3 2 1 5 5 C 1.50706 * 120.75596 * 179.75690 * 4 3 2 6 6 C 1.38426 * 118.48780 * 359.47719 * 4 3 2 7 7 C 1.50703 * 120.44220 * 180.22837 * 6 4 3 8 8 C 1.50702 * 109.46847 * 90.00410 * 7 6 4 9 9 O 1.21277 * 119.99785 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99733 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00031 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46536 * 324.99689 * 11 10 8 13 13 C 1.53001 * 109.47288 * 84.99502 * 11 10 8 14 14 C 1.52998 * 109.46939 * 204.99843 * 11 10 8 15 15 C 1.52996 * 109.47323 * 64.99801 * 14 11 10 16 16 C 1.52998 * 109.47323 * 180.02562 * 15 14 11 17 17 N 1.46498 * 109.47327 * 179.97438 * 16 15 14 18 18 C 1.36938 * 120.00002 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00329 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00190 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00155 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99682 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46815 * 90.00102 * 22 20 18 24 24 H 1.48501 * 109.47130 * 209.99756 * 22 20 18 25 25 H 1.48499 * 109.47305 * 330.00015 * 22 20 18 26 26 C 1.38873 * 119.11080 * 0.25587 * 6 4 3 27 27 O 1.35677 * 119.68357 * 179.97438 * 26 6 4 28 28 N 1.31936 * 119.57885 * 179.72022 * 2 1 3 29 29 H 1.09003 * 109.47180 * 270.28289 * 1 2 3 30 30 H 1.09003 * 109.47370 * 30.27301 * 1 2 3 31 31 H 1.08994 * 109.47410 * 150.27838 * 1 2 3 32 32 H 1.07997 * 120.35997 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.46953 * 269.71615 * 5 4 3 34 34 H 1.09000 * 109.47318 * 29.71212 * 5 4 3 35 35 H 1.09000 * 109.47161 * 149.71843 * 5 4 3 36 36 H 1.09003 * 109.46859 * 210.00201 * 7 6 4 37 37 H 1.09004 * 109.47209 * 330.00170 * 7 6 4 38 38 H 0.97007 * 120.00218 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.46579 * 179.97438 * 13 11 10 40 40 H 1.08993 * 109.46955 * 300.00197 * 13 11 10 41 41 H 1.08992 * 109.47059 * 60.00267 * 13 11 10 42 42 H 1.09004 * 109.46625 * 184.99539 * 14 11 10 43 43 H 1.08999 * 109.47446 * 304.99361 * 14 11 10 44 44 H 1.09004 * 109.47056 * 299.99474 * 15 14 11 45 45 H 1.09000 * 109.47655 * 59.99723 * 15 14 11 46 46 H 1.09008 * 109.47321 * 299.99837 * 16 15 14 47 47 H 1.08999 * 109.47446 * 59.99560 * 16 15 14 48 48 H 0.97001 * 120.00153 * 359.97438 * 17 16 15 49 49 H 0.97007 * 119.99715 * 180.02562 * 21 20 18 50 50 H 0.96701 * 114.00203 * 89.99607 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5765 1.1936 -0.0053 5 6 4.3540 2.4846 -0.0110 6 6 4.2304 -0.0265 0.0006 7 6 5.7363 -0.0857 0.0004 8 6 6.2387 -0.0984 1.4211 9 8 5.4515 -0.0623 2.3430 10 7 7.5628 -0.1498 1.6672 11 6 8.0512 -0.1626 3.0483 12 1 7.4028 0.4560 3.6687 13 6 8.0457 -1.5981 3.5779 14 6 9.4769 0.3910 3.0902 15 6 9.4640 1.8647 2.6791 16 6 10.8898 2.4182 2.7204 17 7 10.8775 3.8291 2.3262 18 6 12.0474 4.5399 2.2892 19 1 12.9791 4.0603 2.5502 20 6 12.0359 5.8766 1.9151 21 7 13.1604 6.5596 1.8791 22 14 10.4243 6.7060 1.4629 23 1 9.8139 7.2984 2.6801 24 1 10.6813 7.7770 0.4668 25 1 9.4968 5.7022 0.8823 26 6 3.4802 -1.1951 0.0062 27 8 4.1091 -2.3973 0.0116 28 7 2.1583 -1.1474 0.0056 29 1 -0.3634 0.0051 1.0277 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3634 -0.8924 -0.5095 32 1 1.6479 2.1356 -0.0004 33 1 4.5418 2.7911 -1.0400 34 1 3.7788 3.2574 0.4990 35 1 5.3037 2.3391 0.5039 36 1 6.0641 -0.9919 -0.5090 37 1 6.1342 0.7867 -0.5180 38 1 8.1924 -0.1790 0.9298 39 1 8.4096 -1.6076 4.6053 40 1 7.0301 -1.9924 3.5480 41 1 8.6941 -2.2167 2.9575 42 1 9.8726 0.2995 4.1017 43 1 10.1061 -0.1728 2.4015 44 1 9.0683 1.9563 1.6676 45 1 8.8349 2.4286 3.3678 46 1 11.2860 2.3266 3.7318 47 1 11.5186 1.8543 2.0314 48 1 10.0407 4.2598 2.0913 49 1 13.1523 7.4939 1.6181 50 1 4.2918 -2.7417 0.8965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717681306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:03 Heat of formation + Delta-G solvation = -53.407649 kcal Electronic energy + Delta-G solvation = -28825.757473 eV Core-core repulsion = 24852.820904 eV Total energy + Delta-G solvation = -3972.936569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.20770 -39.82621 -37.55437 -36.99368 -35.18720 -34.92260 -32.75651 -32.22308 -31.51509 -30.39439 -29.67054 -28.02563 -26.32279 -25.86496 -23.22432 -22.72839 -21.67026 -21.03422 -20.84997 -20.52855 -18.62929 -17.58088 -17.53191 -17.35446 -16.61277 -15.94920 -15.50728 -15.25901 -14.75485 -14.55307 -14.48623 -14.10218 -13.91598 -13.84434 -13.76161 -13.49833 -13.27263 -13.20796 -13.03199 -12.69937 -12.63997 -12.33071 -12.26192 -12.21568 -12.19296 -11.85564 -11.81637 -11.74115 -11.34358 -11.01389 -10.95239 -10.58027 -10.45247 -10.15731 -10.12803 -9.71488 -9.64544 -9.61783 -9.25063 -8.91979 -8.91147 -7.25623 -5.79324 -3.14827 0.68634 0.91766 2.42472 2.92557 3.17330 3.33904 3.37173 3.42363 3.52662 4.12308 4.28862 4.48283 4.52592 4.53896 4.56427 4.70337 4.88948 4.91258 5.02083 5.02241 5.06121 5.09311 5.22916 5.26142 5.29775 5.30576 5.38057 5.42807 5.49317 5.50768 5.56249 5.64199 5.73547 5.77266 5.80168 5.87686 5.95620 5.98645 6.04385 6.07195 6.23907 6.25268 6.35591 6.70761 6.74334 7.17389 7.30398 7.67506 7.97141 8.02015 8.39896 9.19064 9.91540 10.11444 11.39133 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.002558 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.102113 B =10944.380970 C =12699.734414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.151 3.849 3 C -0.183 4.183 4 C -0.009 4.009 5 C -0.122 4.122 6 C -0.135 4.135 7 C -0.101 4.101 8 C 0.517 3.483 9 O -0.538 6.538 10 N -0.721 5.721 11 C 0.141 3.859 12 H 0.088 0.912 13 C -0.161 4.161 14 C -0.123 4.123 15 C -0.129 4.129 16 C 0.156 3.844 17 N -0.758 5.758 18 C -0.245 4.245 19 H 0.090 0.910 20 C 0.002 3.998 21 N -0.934 5.934 22 Si 0.886 3.114 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.331 3.669 27 O -0.482 6.482 28 N -0.508 5.508 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.402 0.598 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.026 0.974 47 H 0.025 0.975 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.270 -17.443 -3.809 28.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.014 3.986 3 C -0.203 4.203 4 C -0.017 4.017 5 C -0.178 4.178 6 C -0.139 4.139 7 C -0.141 4.141 8 C 0.303 3.697 9 O -0.415 6.415 10 N -0.373 5.373 11 C 0.037 3.963 12 H 0.106 0.894 13 C -0.220 4.220 14 C -0.161 4.161 15 C -0.167 4.167 16 C 0.029 3.971 17 N -0.403 5.403 18 C -0.375 4.375 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.582 5.582 22 Si 0.717 3.283 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.152 3.848 27 O -0.289 6.289 28 N -0.228 5.228 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.236 0.764 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.043 0.957 48 H 0.192 0.808 49 H 0.069 0.931 50 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -23.018 -18.117 -3.707 29.527 hybrid contribution -0.118 1.326 -0.204 1.347 sum -23.137 -16.791 -3.911 28.854 Atomic orbital electron populations 1.20740 0.88506 1.03579 1.03295 1.20970 0.96723 0.87173 0.93780 1.21809 0.93915 0.99428 1.05122 1.20095 0.93749 0.94883 0.92933 1.20901 1.00348 0.93459 1.03111 1.20071 0.95331 0.92818 1.05702 1.20561 0.92047 1.06105 0.95394 1.20455 0.82433 0.75889 0.90935 1.90717 1.55302 1.49288 1.46199 1.46131 1.06889 1.75033 1.09229 1.21052 0.95894 0.96883 0.82521 0.89432 1.22160 1.02129 0.96315 1.01381 1.21843 0.94630 0.96518 1.03158 1.21779 0.98885 0.94574 1.01454 1.20631 0.93265 0.85529 0.97641 1.42725 1.06776 1.07514 1.83300 1.19073 0.86996 0.92723 1.38661 0.89254 1.24694 0.96481 0.96487 1.01659 1.69706 1.24755 1.09199 1.54577 0.86521 0.84324 0.79286 0.78218 1.21080 1.21699 1.20429 1.18787 0.86625 0.84759 0.94665 1.84691 1.76560 1.33694 1.34003 1.66967 1.09465 1.30727 1.15631 0.90192 0.90457 0.90383 0.84414 0.89965 0.90459 0.90789 0.87049 0.87420 0.76351 0.91513 0.92435 0.92409 0.90083 0.91166 0.92155 0.92044 0.95614 0.95713 0.80759 0.93054 0.74145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.17 36.01 0.37 -0.34 16 2 C 0.15 1.55 6.78 -82.60 -0.56 0.99 16 3 C -0.18 -1.72 9.44 -39.43 -0.37 -2.10 16 4 C -0.01 -0.09 5.91 -104.35 -0.62 -0.71 16 5 C -0.12 -1.03 9.28 36.01 0.33 -0.70 16 6 C -0.14 -1.46 4.40 -104.32 -0.46 -1.92 16 7 C -0.10 -0.87 4.96 -29.03 -0.14 -1.01 16 8 C 0.52 5.44 7.47 -10.99 -0.08 5.36 16 9 O -0.54 -7.63 15.70 5.56 0.09 -7.54 16 10 N -0.72 -6.50 4.53 -53.81 -0.24 -6.74 16 11 C 0.14 1.39 2.57 -67.93 -0.17 1.22 16 12 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 13 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16 14 C -0.12 -1.26 4.75 -26.73 -0.13 -1.39 16 15 C -0.13 -1.78 5.22 -26.73 -0.14 -1.92 16 16 C 0.16 2.89 6.26 -4.04 -0.03 2.86 16 17 N -0.76 -17.90 5.41 -59.91 -0.32 -18.22 16 18 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 21 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 22 Si 0.89 22.00 27.74 -169.99 -4.71 17.28 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 26 C 0.33 3.91 7.72 -17.12 -0.13 3.78 16 27 O -0.48 -4.94 12.62 -18.73 -0.24 -5.18 16 28 N -0.51 -6.32 10.30 -9.55 -0.10 -6.41 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.60 8.10 -51.93 -0.42 0.17 16 35 H 0.07 0.69 6.55 -51.93 -0.34 0.35 16 36 H 0.11 0.80 7.55 -51.93 -0.39 0.41 16 37 H 0.11 0.77 6.81 -51.93 -0.35 0.42 16 38 H 0.40 2.84 8.60 -40.82 -0.35 2.49 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.81 7.75 -51.93 -0.40 0.41 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.36 8.29 5.53 -40.82 -0.23 8.06 16 49 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 50 H 0.40 2.81 9.06 45.56 0.41 3.22 16 LS Contribution 410.99 15.07 6.19 6.19 Total: -1.00 -36.55 410.99 -8.15 -44.70 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -7.55 Total: 8.56 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.03 Total: -4.05 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.11 Total: -59.95 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.15 Total: -12.72 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.55 -8.15 -44.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717681306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.711 kcal (2) G-P(sol) polarization free energy of solvation -36.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds