Wall clock time and date at job start Tue Mar 31 2020 19:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38089 * 119.58405 * 2 1 4 4 C 1.38783 * 119.28342 * 180.25224 * 3 2 1 5 5 C 1.50706 * 120.75596 * 179.75690 * 4 3 2 6 6 C 1.38426 * 118.48780 * 359.47719 * 4 3 2 7 7 C 1.50703 * 120.44220 * 180.22837 * 6 4 3 8 8 C 1.50702 * 109.46847 * 90.00410 * 7 6 4 9 9 O 1.21277 * 119.99785 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99733 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00031 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46536 * 324.99689 * 11 10 8 13 13 C 1.53001 * 109.47288 * 84.99502 * 11 10 8 14 14 C 1.52998 * 109.46939 * 204.99843 * 11 10 8 15 15 C 1.52996 * 109.47323 * 64.99801 * 14 11 10 16 16 C 1.52998 * 109.47323 * 180.02562 * 15 14 11 17 17 N 1.46498 * 109.47327 * 179.97438 * 16 15 14 18 18 C 1.36938 * 120.00002 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00329 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00190 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00155 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99682 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46815 * 90.00102 * 22 20 18 24 24 H 1.48501 * 109.47130 * 209.99756 * 22 20 18 25 25 H 1.48499 * 109.47305 * 330.00015 * 22 20 18 26 26 C 1.38873 * 119.11080 * 0.25587 * 6 4 3 27 27 O 1.35677 * 119.68357 * 179.97438 * 26 6 4 28 28 N 1.31936 * 119.57885 * 179.72022 * 2 1 3 29 29 H 1.09003 * 109.47180 * 270.28289 * 1 2 3 30 30 H 1.09003 * 109.47370 * 30.27301 * 1 2 3 31 31 H 1.08994 * 109.47410 * 150.27838 * 1 2 3 32 32 H 1.07997 * 120.35997 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.46953 * 269.71615 * 5 4 3 34 34 H 1.09000 * 109.47318 * 29.71212 * 5 4 3 35 35 H 1.09000 * 109.47161 * 149.71843 * 5 4 3 36 36 H 1.09003 * 109.46859 * 210.00201 * 7 6 4 37 37 H 1.09004 * 109.47209 * 330.00170 * 7 6 4 38 38 H 0.97007 * 120.00218 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.46579 * 179.97438 * 13 11 10 40 40 H 1.08993 * 109.46955 * 300.00197 * 13 11 10 41 41 H 1.08992 * 109.47059 * 60.00267 * 13 11 10 42 42 H 1.09004 * 109.46625 * 184.99539 * 14 11 10 43 43 H 1.08999 * 109.47446 * 304.99361 * 14 11 10 44 44 H 1.09004 * 109.47056 * 299.99474 * 15 14 11 45 45 H 1.09000 * 109.47655 * 59.99723 * 15 14 11 46 46 H 1.09008 * 109.47321 * 299.99837 * 16 15 14 47 47 H 1.08999 * 109.47446 * 59.99560 * 16 15 14 48 48 H 0.97001 * 120.00153 * 359.97438 * 17 16 15 49 49 H 0.97007 * 119.99715 * 180.02562 * 21 20 18 50 50 H 0.96701 * 114.00203 * 89.99607 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5765 1.1936 -0.0053 5 6 4.3540 2.4846 -0.0110 6 6 4.2304 -0.0265 0.0006 7 6 5.7363 -0.0857 0.0004 8 6 6.2387 -0.0984 1.4211 9 8 5.4515 -0.0623 2.3430 10 7 7.5628 -0.1498 1.6672 11 6 8.0512 -0.1626 3.0483 12 1 7.4028 0.4560 3.6687 13 6 8.0457 -1.5981 3.5779 14 6 9.4769 0.3910 3.0902 15 6 9.4640 1.8647 2.6791 16 6 10.8898 2.4182 2.7204 17 7 10.8775 3.8291 2.3262 18 6 12.0474 4.5399 2.2892 19 1 12.9791 4.0603 2.5502 20 6 12.0359 5.8766 1.9151 21 7 13.1604 6.5596 1.8791 22 14 10.4243 6.7060 1.4629 23 1 9.8139 7.2984 2.6801 24 1 10.6813 7.7770 0.4668 25 1 9.4968 5.7022 0.8823 26 6 3.4802 -1.1951 0.0062 27 8 4.1091 -2.3973 0.0116 28 7 2.1583 -1.1474 0.0056 29 1 -0.3634 0.0051 1.0277 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3634 -0.8924 -0.5095 32 1 1.6479 2.1356 -0.0004 33 1 4.5418 2.7911 -1.0400 34 1 3.7788 3.2574 0.4990 35 1 5.3037 2.3391 0.5039 36 1 6.0641 -0.9919 -0.5090 37 1 6.1342 0.7867 -0.5180 38 1 8.1924 -0.1790 0.9298 39 1 8.4096 -1.6076 4.6053 40 1 7.0301 -1.9924 3.5480 41 1 8.6941 -2.2167 2.9575 42 1 9.8726 0.2995 4.1017 43 1 10.1061 -0.1728 2.4015 44 1 9.0683 1.9563 1.6676 45 1 8.8349 2.4286 3.3678 46 1 11.2860 2.3266 3.7318 47 1 11.5186 1.8543 2.0314 48 1 10.0407 4.2598 2.0913 49 1 13.1523 7.4939 1.6181 50 1 4.2918 -2.7417 0.8965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717681306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:02 Heat of formation + Delta-G solvation = -81.930548 kcal Electronic energy + Delta-G solvation = -28826.994319 eV Core-core repulsion = 24852.820904 eV Total energy + Delta-G solvation = -3974.173415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.94614 -40.64096 -38.28893 -38.04320 -36.64563 -35.74446 -34.22533 -33.12810 -32.72770 -31.51251 -30.59438 -28.67939 -27.39262 -26.88239 -24.49484 -23.82811 -22.67435 -22.34085 -21.65606 -21.30702 -19.61924 -19.37353 -18.30541 -18.13554 -17.43854 -16.70910 -16.58501 -16.26836 -16.13034 -15.78829 -15.64371 -15.17148 -14.96149 -14.77090 -14.59569 -14.51046 -14.10625 -13.98659 -13.87337 -13.82163 -13.53591 -13.49260 -13.21003 -13.08501 -12.89482 -12.84218 -12.83587 -12.54504 -12.51607 -12.45096 -12.08317 -12.01872 -11.86680 -11.74295 -11.52994 -10.99863 -10.96854 -10.47020 -10.38354 -10.05756 -9.63441 -9.29727 -8.03410 -5.37091 -0.04423 0.17854 1.36902 1.41535 1.48917 1.63449 2.18860 2.46671 2.48169 2.80844 3.27998 3.44268 3.50322 3.64733 3.80054 3.86068 3.88478 3.99818 4.11312 4.18694 4.25235 4.37664 4.41332 4.44841 4.51939 4.56716 4.64494 4.67467 4.69949 4.76924 4.81182 4.82480 4.87191 4.92211 4.98401 5.01829 5.09154 5.13585 5.18727 5.29413 5.31372 5.36978 5.43283 5.60366 5.61639 5.75298 6.20977 6.48609 6.58551 6.93411 7.07764 7.27027 7.84748 8.03202 9.18093 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.002558 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.102113 B =10944.380970 C =12699.734414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.135 3.865 3 C -0.186 4.186 4 C -0.021 4.021 5 C -0.119 4.119 6 C -0.147 4.147 7 C -0.094 4.094 8 C 0.519 3.481 9 O -0.578 6.578 10 N -0.712 5.712 11 C 0.146 3.854 12 H 0.065 0.935 13 C -0.155 4.155 14 C -0.112 4.112 15 C -0.116 4.116 16 C 0.151 3.849 17 N -0.762 5.762 18 C -0.237 4.237 19 H 0.055 0.945 20 C -0.068 4.068 21 N -0.985 5.985 22 Si 0.959 3.041 23 H -0.281 1.281 24 H -0.294 1.294 25 H -0.248 1.248 26 C 0.310 3.690 27 O -0.488 6.488 28 N -0.539 5.539 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.164 0.836 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.414 0.586 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.021 0.979 47 H 0.028 0.972 48 H 0.365 0.635 49 H 0.258 0.742 50 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.001 -17.754 -4.619 30.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.002 4.002 3 C -0.206 4.206 4 C -0.029 4.029 5 C -0.175 4.175 6 C -0.151 4.151 7 C -0.134 4.134 8 C 0.307 3.693 9 O -0.458 6.458 10 N -0.364 5.364 11 C 0.041 3.959 12 H 0.083 0.917 13 C -0.214 4.214 14 C -0.150 4.150 15 C -0.154 4.154 16 C 0.025 3.975 17 N -0.407 5.407 18 C -0.368 4.368 19 H 0.073 0.927 20 C -0.259 4.259 21 N -0.635 5.635 22 Si 0.785 3.215 23 H -0.207 1.207 24 H -0.221 1.221 25 H -0.172 1.172 26 C 0.132 3.868 27 O -0.297 6.297 28 N -0.260 5.260 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.182 0.818 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.251 0.749 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.039 0.961 47 H 0.046 0.954 48 H 0.198 0.802 49 H 0.067 0.933 50 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -24.748 -18.491 -4.519 31.222 hybrid contribution 0.493 1.348 0.106 1.439 sum -24.254 -17.143 -4.413 30.027 Atomic orbital electron populations 1.20822 0.86422 1.04545 1.04024 1.21560 0.98263 0.87049 0.93319 1.22143 0.93964 1.00234 1.04223 1.20440 0.94411 0.95408 0.92637 1.20929 0.99702 0.92794 1.04122 1.20280 0.96350 0.92739 1.05747 1.20571 0.90919 1.07600 0.94280 1.20727 0.82416 0.74971 0.91223 1.90703 1.56344 1.51256 1.47505 1.46066 1.06758 1.74214 1.09379 1.20919 0.94984 0.97281 0.82700 0.91653 1.22094 1.01707 0.95422 1.02139 1.21754 0.95171 0.94151 1.03960 1.21649 0.95342 0.96471 1.01933 1.20854 0.96511 0.83060 0.97065 1.42770 1.05311 1.09323 1.83320 1.19064 0.87549 0.93068 1.37146 0.92685 1.25586 1.00511 0.97364 1.02475 1.69897 1.27606 1.09506 1.56498 0.85357 0.79910 0.78338 0.77864 1.20687 1.22114 1.17189 1.19059 0.86881 0.85446 0.95441 1.84649 1.76468 1.33546 1.35024 1.66989 1.10063 1.32087 1.16844 0.89470 0.88055 0.90825 0.81828 0.88294 0.89712 0.91696 0.85641 0.85630 0.74907 0.90765 0.93725 0.90967 0.89484 0.89410 0.91353 0.92766 0.96098 0.95364 0.80165 0.93321 0.73007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.17 71.24 0.72 -0.52 16 2 C 0.13 2.67 6.78 42.51 0.29 2.96 16 3 C -0.19 -3.22 9.44 22.36 0.21 -3.01 16 4 C -0.02 -0.40 5.91 -19.69 -0.12 -0.52 16 5 C -0.12 -1.75 9.28 71.24 0.66 -1.09 16 6 C -0.15 -3.03 4.40 -19.67 -0.09 -3.11 16 7 C -0.09 -1.45 4.96 29.10 0.14 -1.31 16 8 C 0.52 10.16 7.47 87.66 0.65 10.81 16 9 O -0.58 -16.10 15.70 -3.02 -0.05 -16.15 16 10 N -0.71 -11.19 4.53 -442.54 -2.00 -13.20 16 11 C 0.15 2.58 2.57 44.99 0.12 2.70 16 12 H 0.07 1.50 7.58 -2.39 -0.02 1.48 16 13 C -0.16 -2.38 9.48 71.98 0.68 -1.69 16 14 C -0.11 -1.99 4.75 30.59 0.15 -1.84 16 15 C -0.12 -2.91 5.22 30.59 0.16 -2.75 16 16 C 0.15 5.32 6.26 86.38 0.54 5.86 16 17 N -0.76 -34.88 5.41 -343.45 -1.86 -36.74 16 18 C -0.24 -13.52 10.47 84.03 0.88 -12.64 16 19 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 20 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 21 N -0.98 -63.05 13.97 21.65 0.30 -62.74 16 22 Si 0.96 44.80 27.74 68.60 1.90 46.70 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.25 -10.20 6.52 99.48 0.65 -9.55 16 26 C 0.31 7.30 7.72 84.78 0.65 7.95 16 27 O -0.49 -9.96 12.62 -89.95 -1.14 -11.10 16 28 N -0.54 -13.41 10.30 -296.98 -3.06 -16.47 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 0.72 8.08 -2.39 -0.02 0.70 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.06 1.07 6.55 -2.39 -0.02 1.06 16 36 H 0.13 1.56 7.55 -2.39 -0.02 1.55 16 37 H 0.13 1.47 6.81 -2.39 -0.02 1.45 16 38 H 0.41 4.56 8.60 -92.70 -0.80 3.76 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.62 7.75 -2.39 -0.02 1.60 16 45 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 47 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.37 15.85 5.53 -92.71 -0.51 15.34 16 49 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 50 H 0.41 5.85 9.06 -74.06 -0.67 5.18 16 Total: -1.00 -80.66 410.99 -0.85 -81.51 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -1.08 Total: 29.95 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 6.13 Total: -1.76 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -6.62 Total: -129.15 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -1.18 Total: -27.25 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.90 Total: 46.70 kcal Total: -80.66 -0.85 -81.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717681306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.423 kcal (2) G-P(sol) polarization free energy of solvation -80.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds