Wall clock time and date at job start Tue Mar 31 2020 19:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38350 * 119.45542 * 2 1 4 4 C 1.38359 * 119.30189 * 180.23274 * 3 2 1 5 5 C 1.50703 * 120.85766 * 179.77604 * 4 3 2 6 6 C 1.40028 * 118.28697 * 359.49697 * 4 3 2 7 7 C 1.47836 * 120.55853 * 180.22858 * 6 4 3 8 8 O 1.21557 * 119.99771 * 90.00663 * 7 6 4 9 9 N 1.34774 * 120.00595 * 270.00129 * 7 6 4 10 10 C 1.46500 * 120.00471 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47001 * 180.02562 * 10 9 7 12 12 O 1.42902 * 109.47390 * 65.00023 * 11 10 9 13 13 C 1.42898 * 113.99979 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47395 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47240 * 180.02562 * 14 13 12 16 16 N 1.46503 * 109.46919 * 180.02562 * 15 14 13 17 17 C 1.36937 * 120.00159 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99989 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00243 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00038 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00055 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46816 * 89.99992 * 21 19 17 23 23 H 1.48500 * 109.47419 * 209.99919 * 21 19 17 24 24 H 1.48501 * 109.47352 * 330.00455 * 21 19 17 25 25 C 1.39515 * 118.88129 * 0.25499 * 6 4 3 26 26 C 1.50699 * 119.71821 * 179.97438 * 25 6 4 27 27 N 1.31700 * 120.56709 * 0.02562 * 25 6 4 28 28 H 1.09005 * 109.47356 * 270.27618 * 1 2 3 29 29 H 1.08999 * 109.47623 * 30.27594 * 1 2 3 30 30 H 1.09010 * 109.47148 * 150.27778 * 1 2 3 31 31 H 1.07999 * 120.35704 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47152 * 269.71601 * 5 4 3 33 33 H 1.09001 * 109.46980 * 149.71702 * 5 4 3 34 34 H 1.09004 * 109.47113 * 29.71683 * 5 4 3 35 35 H 0.97003 * 119.99488 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.46699 * 300.00099 * 10 9 7 37 37 H 1.08995 * 109.47029 * 59.99912 * 10 9 7 38 38 H 1.09008 * 109.46926 * 184.99855 * 11 10 9 39 39 H 1.08997 * 109.47344 * 304.99789 * 11 10 9 40 40 H 1.09007 * 109.47344 * 299.99977 * 13 12 11 41 41 H 1.09000 * 109.47339 * 59.99995 * 13 12 11 42 42 H 1.08997 * 109.46947 * 300.00451 * 14 13 12 43 43 H 1.09000 * 109.46773 * 59.99782 * 14 13 12 44 44 H 1.08996 * 109.47314 * 299.99493 * 15 14 13 45 45 H 1.09000 * 109.47520 * 60.00112 * 15 14 13 46 46 H 0.96994 * 120.00343 * 359.97438 * 16 15 14 47 47 H 0.96995 * 120.00077 * 179.97438 * 20 19 17 48 48 H 1.08994 * 109.47141 * 89.99947 * 26 25 6 49 49 H 1.09003 * 109.47519 * 210.00228 * 26 25 6 50 50 H 1.09000 * 109.47158 * 330.00198 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1873 1.2047 0.0000 4 6 3.5709 1.2010 -0.0049 5 6 4.3473 2.4926 -0.0101 6 6 4.2312 -0.0338 0.0011 7 6 5.7082 -0.0964 0.0014 8 8 6.3155 -0.1170 1.0542 9 7 6.3816 -0.1306 -1.1656 10 6 7.8452 -0.1931 -1.1653 11 6 8.3547 -0.2209 -2.6077 12 8 8.0292 1.0125 -3.2519 13 6 8.4635 1.0907 -4.6110 14 6 8.0631 2.4460 -5.1972 15 6 8.5276 2.5295 -6.6525 16 7 8.1446 3.8275 -7.2136 17 6 8.4567 4.1312 -8.5119 18 1 8.9855 3.4140 -9.1221 19 6 8.0934 5.3608 -9.0437 20 7 8.3938 5.6529 -10.2915 21 14 7.1782 6.6011 -7.9886 22 1 8.1560 7.4722 -7.2882 23 1 6.3021 7.4340 -8.8511 24 1 6.3490 5.8831 -6.9874 25 6 3.4717 -1.2041 0.0063 26 6 4.1628 -2.5433 0.0123 27 7 2.1558 -1.1486 0.0051 28 1 -0.3634 0.0050 1.0277 29 1 -0.3634 0.8875 -0.5181 30 1 -0.3634 -0.8925 -0.5096 31 1 1.6443 2.1382 -0.0004 32 1 4.5352 2.7994 -1.0390 33 1 5.2969 2.3478 0.5050 34 1 3.7713 3.2648 0.4999 35 1 5.8970 -0.1138 -2.0058 36 1 8.2461 0.6830 -0.6556 37 1 8.1702 -1.0953 -0.6473 38 1 9.4363 -0.3567 -2.6084 39 1 7.8846 -1.0457 -3.1433 40 1 9.5474 0.9823 -4.6529 41 1 7.9960 0.2931 -5.1884 42 1 6.9793 2.5540 -5.1553 43 1 8.5303 3.2438 -4.6199 44 1 9.6114 2.4214 -6.6948 45 1 8.0601 1.7317 -7.2296 46 1 7.6694 4.4716 -6.6657 47 1 8.1396 6.5119 -10.6633 48 1 4.3294 -2.8616 1.0413 49 1 3.5386 -3.2766 -0.4983 50 1 5.1203 -2.4603 -0.5019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717722895.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:34 Heat of formation + Delta-G solvation = -54.065651 kcal Electronic energy + Delta-G solvation = -28046.895299 eV Core-core repulsion = 24073.930197 eV Total energy + Delta-G solvation = -3972.965102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.24769 -39.52860 -38.28625 -35.66454 -34.87151 -34.63967 -34.16416 -32.39074 -30.68199 -29.77896 -29.27857 -28.18438 -27.52671 -25.30539 -23.56607 -22.43058 -22.23323 -21.58412 -21.04778 -20.79249 -18.15993 -17.57405 -17.47787 -16.98431 -16.79367 -15.98473 -15.52063 -15.20941 -15.05015 -14.95762 -14.61145 -14.25449 -14.03267 -13.78013 -13.70919 -13.65405 -13.59950 -13.39695 -13.22638 -12.92258 -12.72518 -12.65582 -12.50931 -12.36142 -12.16521 -12.07527 -11.96278 -11.65813 -11.06754 -10.96862 -10.76460 -10.73985 -10.55979 -10.16475 -9.90488 -9.80727 -9.74003 -9.62426 -9.46358 -9.19791 -8.92912 -7.27301 -5.79678 -3.15861 0.47807 0.79563 2.18470 2.76205 3.21386 3.35794 3.38459 3.39224 3.44015 3.72376 4.11118 4.16162 4.32650 4.56197 4.56985 4.63644 4.77694 4.89196 4.93775 5.00641 5.02446 5.06861 5.10754 5.13620 5.14221 5.17470 5.21637 5.23778 5.25719 5.40695 5.44975 5.49187 5.50410 5.63302 5.66322 5.70932 5.71629 5.80465 5.90555 5.90869 6.00952 6.15637 6.22967 6.64641 6.69392 7.01197 7.07899 7.54424 7.79345 7.95894 8.39253 9.17946 9.90305 10.09954 11.38582 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011283 B = 0.002167 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.088181 B =12915.458569 C =14419.344678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.150 3.850 3 C -0.182 4.182 4 C 0.004 3.996 5 C -0.127 4.127 6 C -0.191 4.191 7 C 0.574 3.426 8 O -0.532 6.532 9 N -0.715 5.715 10 C 0.121 3.879 11 C 0.048 3.952 12 O -0.388 6.388 13 C 0.068 3.932 14 C -0.128 4.128 15 C 0.160 3.840 16 N -0.756 5.756 17 C -0.246 4.246 18 H 0.090 0.910 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.886 3.114 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.173 3.827 26 C -0.109 4.109 27 N -0.489 5.489 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.407 0.593 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.028 0.972 45 H 0.027 0.973 46 H 0.362 0.638 47 H 0.260 0.740 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 -15.936 24.705 31.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.013 3.987 3 C -0.202 4.202 4 C -0.004 4.004 5 C -0.183 4.183 6 C -0.197 4.197 7 C 0.359 3.641 8 O -0.408 6.408 9 N -0.367 5.367 10 C -0.002 4.002 11 C -0.029 4.029 12 O -0.308 6.308 13 C -0.009 4.009 14 C -0.166 4.166 15 C 0.033 3.967 16 N -0.402 5.402 17 C -0.376 4.376 18 H 0.108 0.892 19 C -0.192 4.192 20 N -0.582 5.582 21 Si 0.716 3.284 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.035 3.965 26 C -0.166 4.166 27 N -0.200 5.200 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.159 0.841 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.242 0.758 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.045 0.955 46 H 0.194 0.806 47 H 0.070 0.930 48 H 0.103 0.897 49 H 0.103 0.897 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.071 -16.590 25.306 32.221 hybrid contribution -0.235 1.627 0.045 1.645 sum -11.306 -14.963 25.352 31.534 Atomic orbital electron populations 1.20776 0.88364 1.03876 1.03360 1.21437 0.97214 0.88013 0.92047 1.21794 0.93656 0.99664 1.05112 1.20352 0.93858 0.94458 0.91693 1.20961 1.00217 0.93284 1.03836 1.20576 0.94164 0.94737 1.10183 1.17983 0.86409 0.75738 0.83950 1.90817 1.69398 1.49370 1.31234 1.45992 1.07490 1.74547 1.08682 1.21463 0.79623 1.03347 0.95757 1.22722 1.00112 0.87670 0.92402 1.87908 1.80698 1.35938 1.26211 1.22488 0.98566 0.98587 0.81241 1.21710 1.02188 0.95601 0.97104 1.20487 0.97389 0.89014 0.89807 1.42680 1.70263 1.14846 1.12404 1.19055 1.31155 1.00582 0.86828 0.89191 1.24690 1.00860 0.97608 0.96059 1.69705 1.51908 1.23348 1.13192 0.86520 0.79985 0.81963 0.79905 1.21003 1.21662 1.20308 1.21266 0.88992 0.94459 0.91830 1.20803 0.99704 0.92337 1.03795 1.67376 1.08710 1.29195 1.14740 0.90059 0.90331 0.90157 0.84094 0.89431 0.90648 0.90231 0.75797 0.90244 0.89734 0.91352 0.92534 0.92967 0.93084 0.91307 0.91196 0.95411 0.95496 0.80578 0.93009 0.89674 0.89680 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.16 36.00 0.37 -0.25 16 2 C 0.15 1.34 6.78 -82.51 -0.56 0.78 16 3 C -0.18 -1.53 9.43 -39.50 -0.37 -1.90 16 4 C 0.00 0.04 5.95 -103.91 -0.62 -0.58 16 5 C -0.13 -1.06 9.69 36.01 0.35 -0.71 16 6 C -0.19 -2.01 5.65 -104.82 -0.59 -2.61 16 7 C 0.57 6.31 4.35 -12.33 -0.05 6.25 16 8 O -0.53 -7.56 17.11 5.32 0.09 -7.47 16 9 N -0.72 -6.35 5.50 -61.26 -0.34 -6.69 16 10 C 0.12 0.99 6.06 -4.04 -0.02 0.96 16 11 C 0.05 0.37 6.07 37.16 0.23 0.60 16 12 O -0.39 -4.31 10.29 -35.23 -0.36 -4.67 16 13 C 0.07 0.79 5.94 37.16 0.22 1.01 16 14 C -0.13 -1.91 5.70 -26.74 -0.15 -2.06 16 15 C 0.16 3.02 6.26 -4.04 -0.03 2.99 16 16 N -0.76 -18.10 5.41 -59.91 -0.32 -18.43 16 17 C -0.25 -7.03 10.47 -15.06 -0.16 -7.19 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 20 N -0.93 -29.38 13.97 55.49 0.78 -28.61 16 21 Si 0.89 22.13 27.73 -169.99 -4.71 17.41 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 25 C 0.17 1.78 6.82 -82.17 -0.56 1.22 16 26 C -0.11 -0.87 9.79 36.01 0.35 -0.52 16 27 N -0.49 -5.17 10.17 -5.42 -0.06 -5.22 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.73 7.19 -51.93 -0.37 0.36 16 34 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.41 3.25 8.46 -40.82 -0.35 2.91 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.36 8.43 5.53 -40.82 -0.23 8.21 16 47 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.54 7.07 -51.93 -0.37 0.17 16 LS Contribution 416.51 15.07 6.28 6.28 Total: -1.00 -35.50 416.51 -8.86 -44.36 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -8.51 Total: 5.00 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.70 Total: -1.96 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.06 Total: -58.95 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.27 Total: -12.14 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.50 -8.86 -44.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717722895.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.706 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds